Wall clock time and date at job start Sat Apr 11 2020 05:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46608 * 2 1 4 4 N 1.46505 * 109.47022 * 119.99772 * 2 1 3 5 5 C 1.34775 * 119.99935 * 275.00224 * 4 2 1 6 6 O 1.21284 * 120.00033 * 359.97438 * 5 4 2 7 7 C 1.50697 * 119.99972 * 179.97438 * 5 4 2 8 8 S 1.81002 * 109.47335 * 179.97438 * 7 5 4 9 9 C 1.76194 * 100.00086 * 180.02562 * 8 7 5 10 10 H 1.08003 * 120.00015 * 359.97438 * 9 8 7 11 11 C 1.38800 * 120.00197 * 180.02562 * 9 8 7 12 12 N 1.31627 * 119.99798 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00174 * 180.02562 * 11 9 8 14 14 H 1.48490 * 109.47314 * 89.99957 * 13 11 9 15 15 H 1.48504 * 109.46838 * 210.00098 * 13 11 9 16 16 H 1.48505 * 109.46941 * 329.99858 * 13 11 9 17 17 C 1.52996 * 109.47013 * 239.99658 * 2 1 3 18 18 C 1.53517 * 114.16834 * 60.00305 * 17 2 1 19 19 N 1.47479 * 87.99753 * 139.69722 * 18 17 2 20 20 C 1.46893 * 111.00130 * 221.26429 * 19 18 17 21 21 C 1.50699 * 109.47365 * 170.00095 * 20 19 18 22 22 C 1.39680 * 127.05170 * 94.99579 * 21 20 19 23 23 N 1.31383 * 105.90000 * 179.97438 * 22 21 20 24 24 N 1.28599 * 108.71640 * 0.02562 * 23 22 21 25 25 C 1.46508 * 124.61363 * 179.97438 * 24 23 22 26 26 N 1.28591 * 110.76640 * 359.74870 * 24 23 22 27 27 C 1.47486 * 87.83624 * 332.95820 * 19 18 17 28 28 H 1.08999 * 109.46925 * 59.99823 * 1 2 3 29 29 H 1.08995 * 109.47067 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47358 * 300.00167 * 1 2 3 31 31 H 0.96995 * 119.99974 * 95.00004 * 4 2 1 32 32 H 1.09000 * 109.47590 * 300.00113 * 7 5 4 33 33 H 1.09008 * 109.46904 * 59.99876 * 7 5 4 34 34 H 0.96996 * 120.00019 * 179.97438 * 12 11 9 35 35 H 1.08992 * 113.38540 * 286.92041 * 17 2 1 36 36 H 1.09002 * 113.47888 * 24.90080 * 18 17 2 37 37 H 1.09003 * 113.47419 * 254.49414 * 18 17 2 38 38 H 1.08996 * 109.47219 * 289.99944 * 20 19 18 39 39 H 1.09003 * 109.47111 * 50.00095 * 20 19 18 40 40 H 1.07994 * 127.04905 * 0.02562 * 22 21 20 41 41 H 1.08999 * 109.46723 * 90.02785 * 25 24 23 42 42 H 1.09001 * 109.47024 * 210.02730 * 25 24 23 43 43 H 1.09004 * 109.47307 * 330.02546 * 25 24 23 44 44 H 1.09001 * 113.47573 * 141.77409 * 27 19 18 45 45 H 1.08996 * 113.47515 * 272.18523 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8590 1.1587 2.4115 7 6 2.6488 -0.7287 3.5878 8 16 2.7105 0.4346 4.9731 9 6 3.3135 -0.6306 6.2405 10 1 3.5220 -1.6673 6.0207 11 6 3.5196 -0.1377 7.5216 12 7 3.2650 1.1256 7.7895 13 14 4.1596 -1.2669 8.8650 14 1 5.6439 -1.2275 8.8793 15 1 3.6397 -0.8150 10.1807 16 1 3.7037 -2.6557 8.6032 17 6 2.0400 -0.7213 -1.2492 18 6 1.5893 -0.0839 -2.5710 19 7 2.9416 -0.3452 -3.0983 20 6 3.4270 0.7929 -3.8900 21 6 4.8882 0.5998 -4.2039 22 6 5.4336 0.0416 -5.3623 23 7 6.7369 0.0766 -5.1997 24 7 6.9959 0.6025 -4.0551 25 6 8.3440 0.8092 -3.5201 26 7 5.9106 0.9265 -3.4461 27 6 3.4359 -0.2728 -1.7106 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 2.2491 -1.6317 1.1527 32 1 1.9759 -1.5505 3.8327 33 1 3.6480 -1.1213 3.3987 34 1 3.4086 1.4699 8.6848 35 1 1.9097 -1.8026 -1.2078 36 1 1.3548 0.9770 -2.4838 37 1 0.8080 -0.6477 -3.0808 38 1 2.8611 0.8567 -4.8194 39 1 3.2961 1.7135 -3.3211 40 1 4.8945 -0.3397 -6.2169 41 1 8.7077 1.7916 -3.8214 42 1 8.3161 0.7501 -2.4320 43 1 9.0111 0.0398 -3.9088 44 1 4.2197 -0.9976 -1.4905 45 1 3.6951 0.7374 -1.3941 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570829883.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:49 Heat of formation + Delta-G solvation = 80.837395 kcal Electronic energy + Delta-G solvation = -26139.680029 eV Core-core repulsion = 22321.321238 eV Total energy + Delta-G solvation = -3818.358791 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.53032 -41.54689 -40.31032 -36.51394 -35.02242 -34.58749 -33.65736 -32.77203 -31.10194 -29.83583 -28.23119 -27.66638 -26.79123 -25.78696 -23.64027 -22.98120 -21.80803 -21.47115 -20.70142 -19.73883 -18.21724 -17.95185 -17.76506 -17.64378 -16.88321 -16.65046 -16.41196 -16.09871 -16.07532 -15.68064 -15.44763 -14.91374 -14.64230 -14.46536 -14.20706 -13.97387 -13.76920 -13.73121 -13.58386 -13.22127 -13.16557 -12.96364 -12.89291 -12.78759 -12.59919 -12.44485 -11.90780 -11.82251 -11.73945 -11.71633 -11.43076 -11.31562 -11.14643 -10.87843 -10.30653 -10.27318 -10.06713 -9.81175 -8.66582 -8.34910 -6.12769 0.79195 1.27122 1.39756 1.41977 1.47089 1.48628 1.57622 1.65003 2.25799 2.30851 2.99089 3.01637 3.17094 3.30769 3.40039 3.67846 3.75728 3.97802 4.12564 4.20024 4.21134 4.25017 4.29888 4.31377 4.39879 4.45628 4.50541 4.51367 4.52949 4.58483 4.62510 4.76838 4.82499 4.86000 5.01075 5.03236 5.21060 5.24376 5.28554 5.37669 5.41511 5.59343 5.73865 5.98897 6.19584 6.55258 7.06329 7.29298 7.32706 8.74319 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012980 B = 0.002156 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.632791 B =12982.921744 C =14590.713867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.155 3.845 3 H 0.061 0.939 4 N -0.708 5.708 5 C 0.535 3.465 6 O -0.565 6.565 7 C -0.130 4.130 8 S -0.152 6.152 9 C -0.546 4.546 10 H 0.082 0.918 11 C 0.012 3.988 12 N -0.911 5.911 13 Si 0.999 3.001 14 H -0.268 1.268 15 H -0.277 1.277 16 H -0.258 1.258 17 C -0.109 4.109 18 C 0.019 3.981 19 N -0.469 5.469 20 C 0.110 3.890 21 C -0.003 4.003 22 C -0.014 4.014 23 N -0.313 5.313 24 N -0.165 5.165 25 C 0.097 3.903 26 N -0.309 5.309 27 C 0.010 3.990 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.031 0.969 31 H 0.415 0.585 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.271 0.729 35 H 0.124 0.876 36 H 0.081 0.919 37 H 0.115 0.885 38 H 0.127 0.873 39 H 0.055 0.945 40 H 0.225 0.775 41 H 0.103 0.897 42 H 0.107 0.893 43 H 0.119 0.881 44 H 0.066 0.934 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.691 -6.407 -29.338 30.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.050 3.950 3 H 0.080 0.920 4 N -0.362 5.362 5 C 0.321 3.679 6 O -0.444 6.444 7 C -0.281 4.281 8 S 0.076 5.924 9 C -0.694 4.694 10 H 0.100 0.900 11 C -0.192 4.192 12 N -0.548 5.548 13 Si 0.820 3.180 14 H -0.193 1.193 15 H -0.203 1.203 16 H -0.182 1.182 17 C -0.128 4.128 18 C -0.110 4.110 19 N -0.192 5.192 20 C -0.020 4.020 21 C -0.165 4.165 22 C -0.196 4.196 23 N -0.154 5.154 24 N -0.066 5.066 25 C -0.042 4.042 26 N -0.153 5.153 27 C -0.120 4.120 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.050 0.950 31 H 0.251 0.749 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.080 0.920 35 H 0.142 0.858 36 H 0.099 0.901 37 H 0.133 0.867 38 H 0.145 0.855 39 H 0.073 0.927 40 H 0.242 0.758 41 H 0.122 0.878 42 H 0.126 0.874 43 H 0.137 0.863 44 H 0.085 0.915 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.689 -4.683 -29.108 29.605 hybrid contribution 0.175 -1.156 1.184 1.664 sum 2.865 -5.839 -27.924 28.671 Atomic orbital electron populations 1.22109 0.93976 1.03180 1.02216 1.20970 0.94928 0.96030 0.83036 0.92039 1.45845 1.67427 1.14541 1.08351 1.20012 0.76681 0.86576 0.84644 1.90684 1.50780 1.17694 1.85193 1.23381 1.05373 1.03200 0.96165 1.85560 1.86694 1.17361 1.02823 1.23199 1.50885 0.98431 0.96847 0.89988 1.26136 0.95100 0.97232 1.00763 1.70182 1.46824 1.15481 1.22283 0.84952 0.78482 0.78207 0.76329 1.19335 1.20259 1.18184 1.22988 0.95393 1.01859 0.92565 1.23851 0.92977 1.01291 0.92860 1.69016 1.05021 1.36218 1.08949 1.20973 0.86434 0.93179 1.01425 1.23247 0.96302 1.03501 0.93492 1.25126 0.88945 1.03828 1.01673 1.74022 1.19421 1.17188 1.04815 1.48320 1.08165 1.40558 1.09603 1.22475 0.74355 1.05758 1.01603 1.74016 0.93904 1.21194 1.26185 1.23788 0.97686 1.00490 0.89993 0.89338 0.90641 0.95016 0.74860 0.87279 0.87537 0.92002 0.85794 0.90130 0.86703 0.85476 0.92681 0.75821 0.87814 0.87419 0.86294 0.91509 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 9.29 71.98 0.67 -2.28 16 2 C 0.16 3.25 2.47 44.99 0.11 3.36 16 3 H 0.06 1.66 7.34 -2.39 -0.02 1.64 16 4 N -0.71 -17.50 5.08 -442.52 -2.25 -19.74 16 5 C 0.54 19.69 7.81 87.66 0.68 20.38 16 6 O -0.57 -26.15 15.52 -3.04 -0.05 -26.20 16 7 C -0.13 -5.18 6.16 71.23 0.44 -4.74 16 8 S -0.15 -8.48 20.57 -56.49 -1.16 -9.65 16 9 C -0.55 -31.37 9.50 67.95 0.65 -30.72 16 10 H 0.08 4.38 7.80 -2.91 -0.02 4.35 16 11 C 0.01 0.71 5.49 84.86 0.47 1.17 16 12 N -0.91 -56.30 13.22 21.65 0.29 -56.01 16 13 Si 1.00 43.79 29.55 68.60 2.03 45.81 16 14 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 15 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 16 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 17 C -0.11 -1.59 3.65 -10.38 -0.04 -1.63 16 18 C 0.02 0.21 6.35 83.58 0.53 0.75 16 19 N -0.47 -7.13 6.40 -931.64 -5.97 -13.10 16 20 C 0.11 1.58 5.42 85.56 0.46 2.04 16 21 C 0.00 -0.05 6.50 42.97 0.28 0.23 16 22 C -0.01 -0.23 12.16 85.11 1.03 0.80 16 23 N -0.31 -6.44 12.05 -56.86 -0.69 -7.12 16 24 N -0.16 -3.31 4.35 -206.53 -0.90 -4.21 16 25 C 0.10 1.06 11.57 127.77 1.48 2.54 16 26 N -0.31 -7.11 12.05 -47.24 -0.57 -7.68 16 27 C 0.01 0.18 6.88 83.64 0.58 0.76 16 28 H 0.09 1.22 7.48 -2.39 -0.02 1.20 16 29 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.03 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.41 7.50 8.60 -92.71 -0.80 6.71 16 32 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 33 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 34 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 35 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.08 0.87 7.73 -2.39 -0.02 0.85 16 37 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.05 0.87 7.56 -2.39 -0.02 0.85 16 40 H 0.23 2.14 8.06 -2.91 -0.02 2.11 16 41 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.12 0.85 8.14 -2.38 -0.02 0.83 16 44 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.06 1.31 7.50 -2.39 -0.02 1.29 16 Total: -1.00 -84.27 393.33 -1.72 -85.99 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 0.20 Total: 19.25 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: 7.34 Total: -7.34 kcal Atomic # 7 Polarization: -97.78 SS G_CDS: -10.08 Total: -107.86 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.05 Total: -26.20 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: -8.48 SS G_CDS: -1.16 Total: -9.65 kcal Total: -84.27 -1.72 -85.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570829883.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.831 kcal (2) G-P(sol) polarization free energy of solvation -84.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds