Wall clock time and date at job start Sat Apr 11 2020 05:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.87307 * 2 1 4 4 C 1.54318 * 110.01081 * 238.90082 * 2 1 3 5 5 H 1.09003 * 110.72326 * 336.68190 * 4 2 1 6 6 N 1.46899 * 110.71970 * 99.78131 * 4 2 1 7 7 C 1.46904 * 110.99801 * 204.99926 * 6 4 2 8 8 C 1.50703 * 109.46876 * 179.97438 * 7 6 4 9 9 C 1.39667 * 127.05132 * 95.00330 * 8 7 6 10 10 N 1.31377 * 105.90306 * 179.97438 * 9 8 7 11 11 N 1.28602 * 108.71971 * 359.97438 * 10 9 8 12 12 C 1.46494 * 124.62129 * 179.97438 * 11 10 9 13 13 N 1.28601 * 110.75606 * 359.74880 * 11 10 9 14 14 C 1.55160 * 102.94100 * 218.31813 * 4 2 1 15 15 C 1.54909 * 101.58106 * 35.50559 * 14 4 2 16 16 N 1.47026 * 109.87951 * 121.01468 * 2 1 3 17 17 C 1.34771 * 125.65100 * 298.24584 * 16 2 1 18 18 O 1.21278 * 120.00143 * 0.02562 * 17 16 2 19 19 C 1.50706 * 119.99931 * 180.02562 * 17 16 2 20 20 S 1.81003 * 109.46955 * 180.02562 * 19 17 16 21 21 C 1.76194 * 99.99790 * 179.97438 * 20 19 17 22 22 H 1.07999 * 120.00153 * 359.97438 * 21 20 19 23 23 C 1.38804 * 119.99728 * 180.02562 * 21 20 19 24 24 N 1.31627 * 120.00001 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99986 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47488 * 89.99394 * 25 23 21 27 27 H 1.48497 * 109.47261 * 209.99703 * 25 23 21 28 28 H 1.48508 * 109.46702 * 329.99435 * 25 23 21 29 29 H 1.09004 * 109.47015 * 300.44067 * 1 2 3 30 30 H 1.08999 * 109.46919 * 60.43556 * 1 2 3 31 31 H 1.08999 * 109.47504 * 180.43659 * 1 2 3 32 32 H 1.00899 * 110.99602 * 328.94717 * 6 4 2 33 33 H 1.08994 * 109.47633 * 299.99721 * 7 6 4 34 34 H 1.09003 * 109.47058 * 60.00438 * 7 6 4 35 35 H 1.08005 * 127.04886 * 359.97438 * 9 8 7 36 36 H 1.09005 * 109.47110 * 90.02738 * 12 11 10 37 37 H 1.09002 * 109.47421 * 210.02363 * 12 11 10 38 38 H 1.09001 * 109.47398 * 330.03152 * 12 11 10 39 39 H 1.09006 * 111.00068 * 153.57567 * 14 4 2 40 40 H 1.08992 * 111.00480 * 277.38794 * 14 4 2 41 41 H 1.08996 * 110.36158 * 204.14752 * 15 14 4 42 42 H 1.09002 * 110.36956 * 81.83034 * 15 14 4 43 43 H 1.09000 * 109.46686 * 299.99326 * 19 17 16 44 44 H 1.08989 * 109.47272 * 60.00000 * 19 17 16 45 45 H 0.97003 * 119.99609 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0581 -0.7490 -1.2416 5 1 1.3104 -1.4472 -1.6178 6 7 2.4553 0.1995 -2.2907 7 6 2.3886 -0.4259 -3.6184 8 6 2.8014 0.5753 -4.6664 9 6 4.0736 0.7388 -5.2192 10 7 3.9662 1.7205 -6.0855 11 7 2.7504 2.1397 -6.0857 12 6 2.2458 3.2293 -6.9248 13 7 2.0369 1.4687 -5.2524 14 6 3.2918 -1.5107 -0.6892 15 6 2.8176 -1.8763 0.7394 16 7 2.0300 -0.7124 1.1850 17 6 1.8097 -0.3570 2.4662 18 8 1.1475 0.6275 2.7171 19 6 2.3862 -1.1832 3.5871 20 16 1.9174 -0.4546 5.1763 21 6 2.7004 -1.5877 6.2751 22 1 3.2593 -2.4235 5.8809 23 6 2.5981 -1.4067 7.6475 24 7 1.9164 -0.3883 8.1280 25 14 3.4288 -2.6075 8.8125 26 1 4.8080 -2.1407 9.1041 27 1 2.6549 -2.6857 10.0775 28 1 3.4839 -3.9510 8.1821 29 1 -0.3633 0.5207 0.8860 30 1 -0.3633 0.5071 -0.8939 31 1 -0.3634 -1.0276 0.0078 32 1 1.8904 1.0347 -2.2557 33 1 3.0603 -1.2836 -3.6502 34 1 1.3682 -0.7559 -3.8137 35 1 4.9633 0.1739 -4.9828 36 1 1.8872 2.8234 -7.8708 37 1 1.4266 3.7334 -6.4120 38 1 3.0480 3.9420 -7.1162 39 1 3.4921 -2.4074 -1.2758 40 1 4.1683 -0.8637 -0.6571 41 1 3.6741 -2.0286 1.3960 42 1 2.1937 -2.7698 0.7151 43 1 1.9984 -2.2000 3.5255 44 1 3.4726 -1.2028 3.5024 45 1 1.8452 -0.2616 9.0871 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571451113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:23 Heat of formation + Delta-G solvation = 84.012237 kcal Electronic energy + Delta-G solvation = -26168.313071 eV Core-core repulsion = 22350.091952 eV Total energy + Delta-G solvation = -3818.221120 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 4.89 seconds Orbital eigenvalues (eV) -43.89219 -40.11693 -37.79383 -35.74497 -33.88460 -32.82852 -32.41252 -31.70200 -30.88325 -28.96316 -28.06089 -26.11162 -25.46691 -24.37107 -22.91555 -22.59416 -21.19560 -20.81134 -18.98034 -17.68434 -17.62248 -17.23359 -16.76976 -16.28408 -15.92609 -15.09204 -15.02213 -14.80585 -14.77441 -14.62619 -13.90763 -13.88900 -13.67124 -13.47242 -13.40786 -13.03163 -12.89278 -12.69109 -12.53616 -12.34733 -11.94679 -11.76129 -11.64716 -11.46821 -11.17330 -11.13629 -11.04879 -11.00066 -10.80914 -10.73931 -10.61883 -9.79683 -9.60625 -9.30896 -9.04941 -8.83223 -8.46812 -8.20892 -6.48008 -6.19922 -3.90271 1.43026 1.94147 2.03321 2.90300 3.11144 3.23623 3.26861 3.31436 3.59142 3.67553 3.97380 4.18952 4.23120 4.38928 4.46571 4.52433 4.57366 4.79299 4.83380 4.87313 5.04632 5.08228 5.15170 5.16178 5.18320 5.25318 5.32908 5.42842 5.55670 5.58483 5.66133 5.70005 5.73960 5.81695 5.91782 5.97275 6.03351 6.16739 6.24790 6.30453 6.53348 6.65846 6.93082 7.61240 7.72904 7.96119 8.36966 8.61211 9.25339 10.87502 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.029830 B = 0.001810 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.421613 B =15469.571797 C =15801.761622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.137 3.863 3 H 0.081 0.919 4 C 0.078 3.922 5 H 0.067 0.933 6 N -0.672 5.672 7 C 0.151 3.849 8 C 0.005 3.995 9 C -0.006 4.006 10 N -0.293 5.293 11 N -0.159 5.159 12 C 0.108 3.892 13 N -0.285 5.285 14 C -0.121 4.121 15 C 0.100 3.900 16 N -0.620 5.620 17 C 0.550 3.450 18 O -0.515 6.515 19 C -0.146 4.146 20 S -0.061 6.061 21 C -0.535 4.535 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.348 0.652 33 H 0.097 0.903 34 H 0.050 0.950 35 H 0.198 0.802 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.906 -0.416 -31.244 31.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.033 3.967 3 H 0.099 0.901 4 C -0.032 4.032 5 H 0.085 0.915 6 N -0.305 5.305 7 C 0.020 3.980 8 C -0.158 4.158 9 C -0.189 4.189 10 N -0.134 5.134 11 N -0.060 5.060 12 C -0.032 4.032 13 N -0.128 5.128 14 C -0.160 4.160 15 C -0.024 4.024 16 N -0.358 5.358 17 C 0.338 3.662 18 O -0.389 6.389 19 C -0.297 4.297 20 S 0.166 5.834 21 C -0.683 4.683 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.197 1.197 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.167 0.833 33 H 0.115 0.885 34 H 0.068 0.932 35 H 0.215 0.785 36 H 0.107 0.893 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.085 0.915 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.017 2.113 -31.367 31.454 hybrid contribution 0.731 -2.590 0.756 2.796 sum 1.748 -0.477 -30.611 30.665 Atomic orbital electron populations 1.22184 0.94775 1.02347 1.03047 1.21525 0.94248 0.96790 0.84184 0.90140 1.22639 0.96367 0.93664 0.90519 0.91538 1.60533 1.60272 1.08029 1.01699 1.20119 1.00518 0.92920 0.84406 1.22992 0.91699 0.99691 1.01456 1.24643 0.99664 0.97960 0.96640 1.74077 1.03609 1.13786 1.21948 1.47885 1.03104 1.26352 1.28657 1.22124 1.01647 0.85900 0.93515 1.73988 1.25641 1.07452 1.05712 1.22852 0.98279 1.00368 0.94479 1.22319 0.95609 0.88988 0.95502 1.48482 1.53845 1.28810 1.04621 1.20003 0.79782 0.85008 0.81368 1.90691 1.38735 1.26836 1.82594 1.23509 1.03665 1.02630 0.99892 1.85392 1.69708 1.37668 0.90644 1.22864 1.38343 1.13999 0.93102 0.90933 1.24990 0.95234 0.95997 0.97352 1.70020 1.38536 1.28069 1.13660 0.86172 0.79203 0.80544 0.79602 1.20269 1.20766 1.19695 0.90446 0.92307 0.92498 0.83268 0.88492 0.93208 0.78506 0.89339 0.87898 0.87887 0.90140 0.89356 0.90091 0.91476 0.89348 0.89305 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 9.12 37.16 0.34 -1.67 16 2 C 0.14 1.66 2.95 -66.95 -0.20 1.47 16 3 H 0.08 1.10 7.90 -51.93 -0.41 0.69 16 4 C 0.08 0.67 2.81 -65.88 -0.18 0.49 16 5 H 0.07 0.51 7.54 -51.93 -0.39 0.12 16 6 N -0.67 -5.50 6.34 -106.05 -0.67 -6.17 16 7 C 0.15 1.03 6.14 -4.97 -0.03 1.00 16 8 C 0.00 0.04 6.86 -82.25 -0.56 -0.52 16 9 C -0.01 -0.05 12.16 -17.22 -0.21 -0.26 16 10 N -0.29 -2.83 12.05 30.67 0.37 -2.46 16 11 N -0.16 -1.38 4.35 -16.64 -0.07 -1.46 16 12 C 0.11 0.42 11.57 59.84 0.69 1.11 16 13 N -0.28 -2.78 12.05 33.71 0.41 -2.37 16 14 C -0.12 -0.99 6.78 -24.58 -0.17 -1.15 16 15 C 0.10 1.05 6.69 -2.53 -0.02 1.04 16 16 N -0.62 -8.98 3.06 -163.02 -0.50 -9.48 16 17 C 0.55 10.69 7.66 -10.98 -0.08 10.61 16 18 O -0.51 -11.92 14.91 5.56 0.08 -11.84 16 19 C -0.15 -3.03 5.16 36.01 0.19 -2.85 16 20 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 21 C -0.53 -15.32 9.50 30.94 0.29 -15.03 16 22 H 0.07 1.96 7.80 -52.49 -0.41 1.56 16 23 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 24 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 25 Si 0.92 21.48 29.55 -169.99 -5.02 16.45 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 29 H 0.08 1.20 6.89 -51.93 -0.36 0.84 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.35 3.10 8.31 -39.29 -0.33 2.78 16 33 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.33 8.08 -51.93 -0.42 -0.09 16 35 H 0.20 1.08 8.06 -52.48 -0.42 0.66 16 36 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.08 0.85 7.47 -51.93 -0.39 0.47 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 44 H 0.09 1.71 7.84 -51.92 -0.41 1.30 16 45 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 389.94 15.07 5.88 5.88 Total: -1.00 -37.12 389.94 -7.95 -45.07 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -6.90 Total: -0.43 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -0.04 Total: -3.76 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: 0.27 Total: -47.49 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.08 Total: -11.84 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.12 -7.95 -45.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571451113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.078 kcal (2) G-P(sol) polarization free energy of solvation -37.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.89 seconds