Wall clock time and date at job start Sat Apr 11 2020 05:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.99883 * 2 1 4 4 C 1.54327 * 109.78079 * 121.16539 * 2 1 3 5 5 C 1.55156 * 103.02221 * 97.49705 * 4 2 1 6 6 H 1.08997 * 111.04030 * 277.22001 * 5 4 2 7 7 N 1.46899 * 111.00839 * 153.38068 * 5 4 2 8 8 C 1.46904 * 111.00241 * 161.35341 * 7 5 4 9 9 C 1.50702 * 109.47014 * 180.02562 * 8 7 5 10 10 C 1.35347 * 126.75193 * 94.71255 * 9 8 7 11 11 N 1.35318 * 106.17525 * 179.84846 * 10 9 8 12 12 C 1.46494 * 125.86997 * 180.11726 * 11 10 9 13 13 N 1.28712 * 108.25932 * 0.41850 * 11 10 9 14 14 N 1.28633 * 110.18125 * 359.73334 * 13 11 10 15 15 C 1.54918 * 101.58012 * 35.30827 * 5 4 2 16 16 N 1.47022 * 109.88477 * 238.90604 * 2 1 3 17 17 C 1.34780 * 125.64445 * 59.56136 * 16 2 1 18 18 O 1.21280 * 120.00423 * 359.71250 * 17 16 2 19 19 C 1.50701 * 119.99795 * 179.71926 * 17 16 2 20 20 S 1.81002 * 109.47156 * 179.97438 * 19 17 16 21 21 C 1.76193 * 100.00049 * 180.02562 * 20 19 17 22 22 H 1.08005 * 120.00026 * 359.97438 * 21 20 19 23 23 C 1.38806 * 120.00056 * 180.02562 * 21 20 19 24 24 N 1.31623 * 119.99640 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00053 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47282 * 59.99711 * 25 23 21 27 27 H 1.48497 * 109.47200 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47280 * 300.00084 * 25 23 21 29 29 H 1.08995 * 109.47193 * 179.63716 * 1 2 3 30 30 H 1.09004 * 109.46931 * 299.64150 * 1 2 3 31 31 H 1.09006 * 109.47131 * 59.63903 * 1 2 3 32 32 H 1.09000 * 110.85610 * 339.03160 * 4 2 1 33 33 H 1.09003 * 110.67447 * 215.88000 * 4 2 1 34 34 H 1.00909 * 110.99970 * 285.30619 * 7 5 4 35 35 H 1.08998 * 109.46686 * 299.99957 * 8 7 5 36 36 H 1.08999 * 109.46824 * 59.99828 * 8 7 5 37 37 H 1.08003 * 126.91144 * 0.02562 * 10 9 8 38 38 H 1.09005 * 109.47083 * 270.33098 * 12 11 10 39 39 H 1.09005 * 109.47178 * 30.32143 * 12 11 10 40 40 H 1.08996 * 109.47231 * 150.32895 * 12 11 10 41 41 H 1.09003 * 110.36670 * 204.15269 * 15 5 4 42 42 H 1.09001 * 110.46005 * 81.87572 * 15 5 4 43 43 H 1.09002 * 109.47060 * 299.99722 * 19 17 16 44 44 H 1.09001 * 109.47380 * 59.99809 * 19 17 16 45 45 H 0.97010 * 119.99946 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0522 -0.7515 1.2426 5 6 2.3561 -2.1697 0.6914 6 1 1.4526 -2.7784 0.6578 7 7 3.4028 -2.8294 1.4833 8 6 3.3887 -4.2825 1.2682 9 6 4.4732 -4.9233 2.0955 10 6 4.3385 -5.4625 3.3296 11 7 5.5640 -5.9188 3.6773 12 6 5.9061 -6.5868 4.9355 13 7 6.3789 -5.6595 2.7153 14 7 5.7594 -5.0660 1.7569 15 6 2.8613 -1.8464 -0.7370 16 7 2.0300 -0.7140 -1.1839 17 6 1.7754 -0.3843 -2.4657 18 8 1.0746 0.5729 -2.7180 19 6 2.3613 -1.2051 -3.5855 20 16 1.8399 -0.5156 -5.1758 21 6 2.6434 -1.6356 -6.2731 22 1 3.2388 -2.4454 -5.8778 23 6 2.5121 -1.4767 -7.6458 24 7 1.7869 -0.4896 -8.1276 25 14 3.3645 -2.6638 -8.8092 26 1 2.8717 -4.0421 -8.5589 27 1 3.0691 -2.2792 -10.2128 28 1 4.8310 -2.6134 -8.5810 29 1 -0.3633 -1.0276 -0.0065 30 1 -0.3633 0.5083 0.8932 31 1 -0.3634 0.5195 -0.8868 32 1 1.2885 -0.7952 2.0191 33 1 2.9600 -0.2828 1.6225 34 1 4.3113 -2.4420 1.2761 35 1 2.4201 -4.6843 1.5654 36 1 3.5621 -4.4953 0.2133 37 1 3.4342 -5.5199 3.9172 38 1 6.2040 -5.8416 5.6731 39 1 5.0389 -7.1353 5.3031 40 1 6.7299 -7.2802 4.7664 41 1 2.7178 -2.7048 -1.3934 42 1 3.9125 -1.5593 -0.7135 43 1 3.4491 -1.1855 -3.5197 44 1 2.0109 -2.2340 -3.5037 45 1 1.6947 -0.3787 -9.0869 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571470752.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:58 Heat of formation + Delta-G solvation = 72.679035 kcal Electronic energy + Delta-G solvation = -26277.442684 eV Core-core repulsion = 22458.730120 eV Total energy + Delta-G solvation = -3818.712564 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.60144 -40.12658 -37.79284 -35.88605 -34.70090 -32.40523 -32.17141 -31.94688 -29.48662 -28.68112 -28.34100 -25.91135 -25.59065 -25.42420 -22.52308 -22.40873 -21.52125 -20.84722 -18.95330 -17.70423 -17.66567 -17.05417 -16.71541 -16.33195 -15.80777 -15.33008 -14.93976 -14.78229 -14.73917 -14.16092 -14.01689 -13.90030 -13.63937 -13.61502 -13.32353 -13.05136 -12.97601 -12.77892 -12.57626 -12.42681 -12.03713 -11.85520 -11.73654 -11.52643 -11.18268 -11.04572 -11.01492 -10.99173 -10.74080 -10.71777 -10.47064 -9.80015 -9.65060 -9.34436 -9.03345 -8.79539 -8.45935 -8.21179 -6.47547 -6.18974 -3.89470 1.20772 1.94537 2.12208 2.92090 3.10227 3.25923 3.27849 3.31271 3.59341 3.79922 3.98928 4.12446 4.22915 4.37036 4.40721 4.41947 4.55347 4.64836 4.70504 4.79141 5.01256 5.07335 5.10538 5.16005 5.16288 5.23051 5.37265 5.44588 5.55619 5.62193 5.64437 5.67174 5.73390 5.75529 5.83257 5.92183 6.10907 6.14111 6.16702 6.33387 6.57190 6.63178 6.95167 7.61907 7.71860 8.14883 8.37716 8.60979 9.26184 10.88356 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010909 B = 0.002409 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.962875 B =11619.993511 C =13951.855518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.135 3.865 3 H 0.074 0.926 4 C -0.114 4.114 5 C 0.078 3.922 6 H 0.098 0.902 7 N -0.671 5.671 8 C 0.142 3.858 9 C -0.019 4.019 10 C -0.031 4.031 11 N -0.297 5.297 12 C 0.081 3.919 13 N -0.087 5.087 14 N -0.261 5.261 15 C 0.072 3.928 16 N -0.619 5.619 17 C 0.549 3.451 18 O -0.513 6.513 19 C -0.147 4.147 20 S -0.059 6.059 21 C -0.535 4.535 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.350 0.650 35 H 0.092 0.908 36 H 0.056 0.944 37 H 0.191 0.809 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.325 -11.348 30.768 32.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.031 3.969 3 H 0.092 0.908 4 C -0.152 4.152 5 C -0.033 4.033 6 H 0.116 0.884 7 N -0.302 5.302 8 C 0.012 3.988 9 C -0.157 4.157 10 C -0.183 4.183 11 N -0.090 5.090 12 C -0.060 4.060 13 N -0.066 5.066 14 N -0.129 5.129 15 C -0.054 4.054 16 N -0.357 5.357 17 C 0.338 3.662 18 O -0.387 6.387 19 C -0.298 4.298 20 S 0.167 5.833 21 C -0.683 4.683 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.169 0.831 35 H 0.110 0.890 36 H 0.074 0.926 37 H 0.208 0.792 38 H 0.110 0.890 39 H 0.117 0.883 40 H 0.120 0.880 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.291 -9.977 30.245 32.018 hybrid contribution 0.808 -2.038 -0.736 2.312 sum 4.099 -12.015 29.510 32.125 Atomic orbital electron populations 1.22153 0.94733 1.02217 1.03012 1.21520 0.94848 0.96389 0.84129 0.90798 1.22688 1.02069 0.93999 0.96466 1.22782 0.95249 0.95712 0.89592 0.88393 1.60619 1.08964 1.02716 1.57899 1.20149 0.94516 0.87371 0.96789 1.21834 0.93970 1.04855 0.95038 1.23393 0.91170 1.04879 0.98810 1.47270 1.07077 1.39101 1.15602 1.22273 1.04307 0.98502 0.80920 1.78344 1.18656 1.16201 0.93446 1.75095 1.04905 1.13582 1.19270 1.23060 0.95326 0.90173 0.96824 1.48481 1.51628 1.30676 1.04933 1.20001 0.80117 0.84675 0.81407 1.90688 1.37252 1.28205 1.82521 1.23520 1.03698 1.02506 1.00069 1.85366 1.66728 1.40621 0.90565 1.22820 1.36279 1.16138 0.93104 0.91021 1.24987 0.95270 0.95972 0.97335 1.70009 1.37262 1.29317 1.13699 0.86230 0.79726 0.80509 0.79078 1.19943 1.20809 1.19918 0.92672 0.92044 0.90708 0.89606 0.90319 0.83080 0.88962 0.92571 0.79160 0.89004 0.88255 0.88028 0.90449 0.91355 0.89431 0.89470 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.05 37.15 0.34 -1.63 16 2 C 0.13 1.63 3.51 -66.95 -0.23 1.39 16 3 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 4 C -0.11 -0.97 6.18 -24.90 -0.15 -1.12 16 5 C 0.08 0.65 3.32 -65.56 -0.22 0.43 16 6 H 0.10 0.79 7.92 -51.93 -0.41 0.38 16 7 N -0.67 -5.21 6.36 -105.72 -0.67 -5.88 16 8 C 0.14 1.07 6.12 -4.97 -0.03 1.04 16 9 C -0.02 -0.17 6.76 -82.78 -0.56 -0.73 16 10 C -0.03 -0.20 11.55 -17.05 -0.20 -0.40 16 11 N -0.30 -2.07 3.74 -68.06 -0.25 -2.33 16 12 C 0.08 0.14 11.39 59.84 0.68 0.82 16 13 N -0.09 -0.96 13.16 60.35 0.79 -0.16 16 14 N -0.26 -3.15 12.41 33.29 0.41 -2.74 16 15 C 0.07 0.80 6.27 -2.53 -0.02 0.79 16 16 N -0.62 -9.04 3.08 -163.01 -0.50 -9.55 16 17 C 0.55 10.78 7.65 -10.98 -0.08 10.70 16 18 O -0.51 -11.90 14.75 5.56 0.08 -11.82 16 19 C -0.15 -3.11 5.16 36.01 0.19 -2.93 16 20 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 21 C -0.54 -15.51 9.50 30.94 0.29 -15.22 16 22 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 23 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 24 N -0.87 -26.47 13.22 55.49 0.73 -25.74 16 25 Si 0.92 21.77 29.55 -169.99 -5.02 16.75 16 26 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 1.16 6.74 -51.93 -0.35 0.81 16 32 H 0.09 0.62 7.83 -51.93 -0.41 0.22 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.35 3.00 8.30 -39.29 -0.33 2.67 16 35 H 0.09 0.52 8.09 -51.93 -0.42 0.10 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.19 0.51 8.06 -52.48 -0.42 0.09 16 38 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 39 H 0.10 -0.09 8.14 -51.93 -0.42 -0.51 16 40 H 0.10 0.13 8.14 -51.93 -0.42 -0.30 16 41 H 0.08 0.87 7.48 -51.93 -0.39 0.49 16 42 H 0.07 0.74 7.81 -51.93 -0.41 0.34 16 43 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 44 H 0.09 1.71 7.85 -51.91 -0.41 1.31 16 45 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 389.58 15.07 5.87 5.87 Total: -1.00 -37.97 389.58 -7.75 -45.72 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -6.89 Total: -1.47 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -0.09 Total: -4.81 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: 0.51 Total: -46.39 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.08 Total: -11.82 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.97 -7.75 -45.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571470752.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.398 kcal (2) G-P(sol) polarization free energy of solvation -37.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds