Wall clock time and date at job start Sat Apr 11 2020 05:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.99883 * 2 1 4 4 C 1.54327 * 109.78079 * 121.16539 * 2 1 3 5 5 C 1.55156 * 103.02221 * 97.49705 * 4 2 1 6 6 H 1.08997 * 111.04030 * 277.22001 * 5 4 2 7 7 N 1.46899 * 111.00839 * 153.38068 * 5 4 2 8 8 C 1.46904 * 111.00241 * 161.35341 * 7 5 4 9 9 C 1.50702 * 109.47014 * 180.02562 * 8 7 5 10 10 C 1.35347 * 126.75193 * 94.71255 * 9 8 7 11 11 N 1.35318 * 106.17525 * 179.84846 * 10 9 8 12 12 C 1.46494 * 125.86997 * 180.11726 * 11 10 9 13 13 N 1.28712 * 108.25932 * 0.41850 * 11 10 9 14 14 N 1.28633 * 110.18125 * 359.73334 * 13 11 10 15 15 C 1.54918 * 101.58012 * 35.30827 * 5 4 2 16 16 N 1.47022 * 109.88477 * 238.90604 * 2 1 3 17 17 C 1.34780 * 125.64445 * 59.56136 * 16 2 1 18 18 O 1.21280 * 120.00423 * 359.71250 * 17 16 2 19 19 C 1.50701 * 119.99795 * 179.71926 * 17 16 2 20 20 S 1.81002 * 109.47156 * 179.97438 * 19 17 16 21 21 C 1.76193 * 100.00049 * 180.02562 * 20 19 17 22 22 H 1.08005 * 120.00026 * 359.97438 * 21 20 19 23 23 C 1.38806 * 120.00056 * 180.02562 * 21 20 19 24 24 N 1.31623 * 119.99640 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00053 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47282 * 59.99711 * 25 23 21 27 27 H 1.48497 * 109.47200 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47280 * 300.00084 * 25 23 21 29 29 H 1.08995 * 109.47193 * 179.63716 * 1 2 3 30 30 H 1.09004 * 109.46931 * 299.64150 * 1 2 3 31 31 H 1.09006 * 109.47131 * 59.63903 * 1 2 3 32 32 H 1.09000 * 110.85610 * 339.03160 * 4 2 1 33 33 H 1.09003 * 110.67447 * 215.88000 * 4 2 1 34 34 H 1.00909 * 110.99970 * 285.30619 * 7 5 4 35 35 H 1.08998 * 109.46686 * 299.99957 * 8 7 5 36 36 H 1.08999 * 109.46824 * 59.99828 * 8 7 5 37 37 H 1.08003 * 126.91144 * 0.02562 * 10 9 8 38 38 H 1.09005 * 109.47083 * 270.33098 * 12 11 10 39 39 H 1.09005 * 109.47178 * 30.32143 * 12 11 10 40 40 H 1.08996 * 109.47231 * 150.32895 * 12 11 10 41 41 H 1.09003 * 110.36670 * 204.15269 * 15 5 4 42 42 H 1.09001 * 110.46005 * 81.87572 * 15 5 4 43 43 H 1.09002 * 109.47060 * 299.99722 * 19 17 16 44 44 H 1.09001 * 109.47380 * 59.99809 * 19 17 16 45 45 H 0.97010 * 119.99946 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0522 -0.7515 1.2426 5 6 2.3561 -2.1697 0.6914 6 1 1.4526 -2.7784 0.6578 7 7 3.4028 -2.8294 1.4833 8 6 3.3887 -4.2825 1.2682 9 6 4.4732 -4.9233 2.0955 10 6 4.3385 -5.4625 3.3296 11 7 5.5640 -5.9188 3.6773 12 6 5.9061 -6.5868 4.9355 13 7 6.3789 -5.6595 2.7153 14 7 5.7594 -5.0660 1.7569 15 6 2.8613 -1.8464 -0.7370 16 7 2.0300 -0.7140 -1.1839 17 6 1.7754 -0.3843 -2.4657 18 8 1.0746 0.5729 -2.7180 19 6 2.3613 -1.2051 -3.5855 20 16 1.8399 -0.5156 -5.1758 21 6 2.6434 -1.6356 -6.2731 22 1 3.2388 -2.4454 -5.8778 23 6 2.5121 -1.4767 -7.6458 24 7 1.7869 -0.4896 -8.1276 25 14 3.3645 -2.6638 -8.8092 26 1 2.8717 -4.0421 -8.5589 27 1 3.0691 -2.2792 -10.2128 28 1 4.8310 -2.6134 -8.5810 29 1 -0.3633 -1.0276 -0.0065 30 1 -0.3633 0.5083 0.8932 31 1 -0.3634 0.5195 -0.8868 32 1 1.2885 -0.7952 2.0191 33 1 2.9600 -0.2828 1.6225 34 1 4.3113 -2.4420 1.2761 35 1 2.4201 -4.6843 1.5654 36 1 3.5621 -4.4953 0.2133 37 1 3.4342 -5.5199 3.9172 38 1 6.2040 -5.8416 5.6731 39 1 5.0389 -7.1353 5.3031 40 1 6.7299 -7.2802 4.7664 41 1 2.7178 -2.7048 -1.3934 42 1 3.9125 -1.5593 -0.7135 43 1 3.4491 -1.1855 -3.5197 44 1 2.0109 -2.2340 -3.5037 45 1 1.6947 -0.3787 -9.0869 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571470752.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:55 Heat of formation + Delta-G solvation = 43.672511 kcal Electronic energy + Delta-G solvation = -26278.700502 eV Core-core repulsion = 22458.730120 eV Total energy + Delta-G solvation = -3819.970381 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.16064 -41.30051 -39.00432 -36.64877 -35.27131 -34.60977 -33.38346 -32.63131 -30.38543 -30.05529 -28.70560 -27.68613 -26.78314 -26.27597 -23.52478 -22.98392 -22.07450 -21.71996 -20.35107 -19.55780 -18.23501 -17.97266 -17.58118 -17.20239 -16.94252 -16.89433 -16.27805 -15.98254 -15.83644 -15.60206 -14.91330 -14.63538 -14.49395 -14.38103 -14.26302 -14.00471 -13.90545 -13.86075 -13.57021 -13.34846 -13.19440 -13.05802 -12.99589 -12.88517 -12.62248 -12.46060 -12.33680 -11.92087 -11.77179 -11.72617 -11.55543 -11.15242 -10.99189 -10.89486 -10.32099 -10.22037 -9.76182 -9.41847 -8.70161 -8.36641 -6.15401 0.70593 1.21626 1.41815 1.42194 1.47764 1.53539 1.55928 1.63703 2.06139 2.25323 2.97044 3.07828 3.26903 3.42924 3.55898 3.70830 3.80189 3.88948 4.05789 4.10226 4.14801 4.20908 4.24828 4.30855 4.37239 4.38837 4.44648 4.57709 4.61612 4.67558 4.72794 4.74475 4.81486 5.00214 5.03987 5.08511 5.17222 5.19923 5.34944 5.38773 5.53580 5.73923 5.95896 6.17171 6.26287 6.39342 7.04083 7.12648 7.54774 8.72361 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010909 B = 0.002409 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.962875 B =11619.993511 C =13951.855518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.127 3.873 3 H 0.062 0.938 4 C -0.098 4.098 5 C 0.093 3.907 6 H 0.112 0.888 7 N -0.660 5.660 8 C 0.145 3.855 9 C -0.039 4.039 10 C -0.014 4.014 11 N -0.291 5.291 12 C 0.069 3.931 13 N -0.130 5.130 14 N -0.308 5.308 15 C 0.062 3.938 16 N -0.609 5.609 17 C 0.547 3.453 18 O -0.559 6.559 19 C -0.122 4.122 20 S -0.145 6.145 21 C -0.548 4.548 22 H 0.080 0.920 23 C 0.014 3.986 24 N -0.909 5.909 25 Si 0.998 3.002 26 H -0.261 1.261 27 H -0.276 1.276 28 H -0.264 1.264 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.032 0.968 32 H 0.111 0.889 33 H 0.085 0.915 34 H 0.345 0.655 35 H 0.118 0.882 36 H 0.042 0.958 37 H 0.234 0.766 38 H 0.106 0.894 39 H 0.132 0.868 40 H 0.102 0.898 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.098 0.902 44 H 0.103 0.897 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.470 -13.768 33.830 36.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.024 3.976 3 H 0.080 0.920 4 C -0.136 4.136 5 C -0.018 4.018 6 H 0.130 0.870 7 N -0.290 5.290 8 C 0.015 3.985 9 C -0.179 4.179 10 C -0.167 4.167 11 N -0.084 5.084 12 C -0.070 4.070 13 N -0.109 5.109 14 N -0.175 5.175 15 C -0.062 4.062 16 N -0.344 5.344 17 C 0.335 3.665 18 O -0.437 6.437 19 C -0.273 4.273 20 S 0.082 5.918 21 C -0.696 4.696 22 H 0.098 0.902 23 C -0.191 4.191 24 N -0.546 5.546 25 Si 0.820 3.180 26 H -0.186 1.186 27 H -0.201 1.201 28 H -0.188 1.188 29 H 0.082 0.918 30 H 0.109 0.891 31 H 0.051 0.949 32 H 0.130 0.870 33 H 0.104 0.896 34 H 0.164 0.836 35 H 0.136 0.864 36 H 0.060 0.940 37 H 0.250 0.750 38 H 0.124 0.876 39 H 0.151 0.849 40 H 0.121 0.879 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.117 0.883 44 H 0.121 0.879 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.483 -12.437 33.382 35.793 hybrid contribution 0.763 -1.312 -1.470 2.113 sum 4.246 -13.749 31.913 35.007 Atomic orbital electron populations 1.22102 0.94532 1.02512 1.02418 1.21799 0.95093 0.96293 0.84418 0.91979 1.22635 1.02982 0.93139 0.94875 1.22705 0.95755 0.96003 0.87367 0.87033 1.60667 1.08491 1.02959 1.56923 1.20222 0.95354 0.86979 0.95976 1.22172 0.93352 1.05937 0.96442 1.24021 0.92030 1.02605 0.98034 1.47691 1.06899 1.37895 1.15920 1.22723 1.06073 0.99020 0.79160 1.78253 1.19954 1.18011 0.94676 1.75018 1.06696 1.15056 1.20700 1.23399 0.95151 0.88800 0.98887 1.48413 1.50763 1.31320 1.03949 1.19696 0.79977 0.84061 0.82807 1.90672 1.39466 1.30061 1.83536 1.23319 1.04209 1.02958 0.96781 1.85512 1.67989 1.42735 0.95520 1.23142 1.36455 1.16271 0.93753 0.90218 1.26129 0.95817 0.97876 0.99244 1.70172 1.38785 1.31368 1.14237 0.85011 0.78649 0.78031 0.76355 1.18592 1.20110 1.18824 0.91821 0.89070 0.94887 0.87049 0.89611 0.83639 0.86403 0.94009 0.75008 0.87552 0.84929 0.87933 0.90485 0.90936 0.88325 0.87871 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.61 9.05 71.98 0.65 -2.96 16 2 C 0.13 2.88 3.51 45.34 0.16 3.04 16 3 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 4 C -0.10 -1.34 6.18 31.78 0.20 -1.14 16 5 C 0.09 1.27 3.32 46.31 0.15 1.42 16 6 H 0.11 1.32 7.92 -2.39 -0.02 1.30 16 7 N -0.66 -8.31 6.36 -488.39 -3.11 -11.42 16 8 C 0.14 1.81 6.12 85.56 0.52 2.33 16 9 C -0.04 -0.63 6.76 41.60 0.28 -0.35 16 10 C -0.01 -0.14 11.55 83.49 0.96 0.83 16 11 N -0.29 -3.43 3.74 -369.24 -1.38 -4.81 16 12 C 0.07 0.05 11.39 127.77 1.46 1.50 16 13 N -0.13 -2.80 13.16 37.02 0.49 -2.31 16 14 N -0.31 -7.37 12.41 -48.60 -0.60 -7.97 16 15 C 0.06 1.29 6.27 86.86 0.54 1.83 16 16 N -0.61 -17.40 3.08 -788.04 -2.43 -19.83 16 17 C 0.55 21.92 7.65 87.66 0.67 22.59 16 18 O -0.56 -27.20 14.75 -3.03 -0.04 -27.24 16 19 C -0.12 -5.21 5.16 71.24 0.37 -4.85 16 20 S -0.14 -8.34 20.57 -56.49 -1.16 -9.50 16 21 C -0.55 -32.31 9.50 67.96 0.65 -31.67 16 22 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 23 C 0.01 0.83 5.49 84.86 0.47 1.30 16 24 N -0.91 -56.86 13.22 21.65 0.29 -56.57 16 25 Si 1.00 44.70 29.55 68.60 2.03 46.72 16 26 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 27 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 28 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 29 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.03 1.04 6.74 -2.38 -0.02 1.02 16 32 H 0.11 1.07 7.83 -2.39 -0.02 1.05 16 33 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.34 5.22 8.30 -89.69 -0.74 4.48 16 35 H 0.12 0.85 8.09 -2.39 -0.02 0.83 16 36 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.23 0.00 8.06 -2.91 -0.02 -0.02 16 38 H 0.11 -0.20 8.14 -2.38 -0.02 -0.21 16 39 H 0.13 -0.79 8.14 -2.38 -0.02 -0.81 16 40 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16 41 H 0.08 1.62 7.48 -2.39 -0.02 1.60 16 42 H 0.07 1.48 7.81 -2.39 -0.02 1.46 16 43 H 0.10 3.97 8.14 -2.39 -0.02 3.95 16 44 H 0.10 4.05 7.85 -2.40 -0.02 4.03 16 45 H 0.27 15.77 8.31 -92.70 -0.77 15.00 16 Total: -1.00 -88.47 389.58 1.41 -87.06 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.26 Total: 12.00 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: 7.08 Total: -6.11 kcal Atomic # 7 Polarization: -96.18 SS G_CDS: -6.75 Total: -102.92 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -0.04 Total: -27.24 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 16 Polarization: -8.34 SS G_CDS: -1.16 Total: -9.50 kcal Total: -88.47 1.41 -87.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571470752.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.733 kcal (2) G-P(sol) polarization free energy of solvation -88.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds