Wall clock time and date at job start Sat Apr 11 2020 05:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09010 * 109.47225 * 2 1 4 4 N 1.46896 * 109.47173 * 119.99970 * 2 1 3 5 5 C 1.46895 * 111.00400 * 274.99990 * 4 2 1 6 6 C 1.50693 * 109.47687 * 179.97438 * 5 4 2 7 7 C 1.35348 * 126.91542 * 94.99864 * 6 5 4 8 8 N 1.33767 * 106.49810 * 179.97438 * 7 6 5 9 9 N 1.28632 * 108.89001 * 0.02562 * 8 7 6 10 10 N 1.28724 * 110.17566 * 359.75604 * 9 8 7 11 11 H 0.96991 * 125.86843 * 180.24156 * 10 9 8 12 12 C 1.53006 * 109.47460 * 240.00231 * 2 1 3 13 13 H 1.09004 * 110.90997 * 302.45155 * 12 2 1 14 14 C 1.55154 * 111.00279 * 66.34751 * 12 2 1 15 15 C 1.54339 * 103.01838 * 153.38572 * 14 12 2 16 16 N 1.47025 * 107.26386 * 338.13969 * 15 14 12 17 17 C 1.34779 * 125.64382 * 178.85232 * 16 15 14 18 18 O 1.21278 * 119.99541 * 179.69677 * 17 16 15 19 19 C 1.50693 * 120.00194 * 359.68968 * 17 16 15 20 20 S 1.80999 * 109.47143 * 180.02562 * 19 17 16 21 21 C 1.76201 * 100.00238 * 180.02562 * 20 19 17 22 22 H 1.08001 * 119.99622 * 359.97438 * 21 20 19 23 23 C 1.38803 * 120.00168 * 180.02562 * 21 20 19 24 24 N 1.31625 * 119.99820 * 180.27733 * 23 21 20 25 25 Si 1.86800 * 119.99759 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46758 * 90.00172 * 25 23 21 27 27 H 1.48499 * 109.47026 * 210.00020 * 25 23 21 28 28 H 1.48496 * 109.47474 * 330.00056 * 25 23 21 29 29 C 1.47419 * 108.70286 * 358.58595 * 16 15 14 30 30 H 1.09008 * 109.47143 * 59.99669 * 1 2 3 31 31 H 1.09000 * 109.46947 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47482 * 300.00063 * 1 2 3 33 33 H 1.00905 * 111.00096 * 151.04309 * 4 2 1 34 34 H 1.09008 * 109.47231 * 300.00014 * 5 4 2 35 35 H 1.09001 * 109.46681 * 59.99640 * 5 4 2 36 36 H 1.07997 * 126.75251 * 359.97438 * 7 6 5 37 37 H 1.09005 * 110.72414 * 271.94155 * 14 12 2 38 38 H 1.09007 * 110.72257 * 35.21726 * 14 12 2 39 39 H 1.09008 * 109.98902 * 218.66429 * 15 14 12 40 40 H 1.08994 * 109.78079 * 97.49809 * 15 14 12 41 41 H 1.08998 * 109.47229 * 59.99906 * 19 17 16 42 42 H 1.09001 * 109.47211 * 300.00298 * 19 17 16 43 43 H 0.97004 * 119.99711 * 179.72642 * 24 23 21 44 44 H 1.09003 * 110.36389 * 143.19277 * 29 16 15 45 45 H 1.09002 * 110.36773 * 265.40382 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0824 0.2225 2.3469 6 6 2.5873 -0.5218 3.5560 7 6 3.8654 -0.5846 3.9969 8 7 3.8516 -1.3494 5.0942 9 7 2.6450 -1.7352 5.3178 10 7 1.8532 -1.2580 4.4221 11 1 0.8953 -1.4028 4.3750 12 6 2.0401 -0.7212 -1.2493 13 1 1.6546 -1.7398 -1.2951 14 6 1.6776 0.0689 -2.5345 15 6 2.7788 -0.3588 -3.5277 16 7 3.9165 -0.8465 -2.7343 17 6 5.0708 -1.3321 -3.2326 18 8 5.9473 -1.7028 -2.4808 19 6 5.2722 -1.4148 -4.7238 20 16 6.9084 -2.1046 -5.0743 21 6 6.8767 -2.0876 -6.8359 22 1 6.0052 -1.7192 -7.3568 23 6 7.9713 -2.5486 -7.5543 24 7 7.9497 -2.5308 -8.8702 25 14 9.4782 -3.1865 -6.6533 26 1 9.3328 -4.6453 -6.4168 27 1 10.6892 -2.9366 -7.4757 28 1 9.6106 -2.4846 -5.3514 29 6 3.5881 -0.7102 -1.3037 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.9173 -1.1205 1.0287 34 1 2.7589 1.0462 2.1182 35 1 1.0870 0.6162 2.5524 36 1 4.7270 -0.1105 3.5505 37 1 0.6921 -0.2201 -2.8999 38 1 1.7231 1.1427 -2.3528 39 1 3.0870 0.4942 -4.1324 40 1 2.4062 -1.1562 -4.1706 41 1 5.1978 -0.4170 -5.1563 42 1 4.5066 -2.0572 -5.1587 43 1 8.7162 -2.8494 -9.3722 44 1 3.9935 -1.5504 -0.7398 45 1 3.9765 0.2305 -0.9132 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575701741.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:09 Heat of formation + Delta-G solvation = 30.106463 kcal Electronic energy + Delta-G solvation = -26263.703740 eV Core-core repulsion = 22443.145090 eV Total energy + Delta-G solvation = -3820.558649 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.28038 -41.20490 -39.30741 -37.29971 -34.69019 -34.55364 -33.93575 -32.21389 -31.11862 -30.11972 -29.24990 -27.86112 -26.50017 -24.53365 -24.00885 -23.08320 -22.48376 -21.02182 -20.76464 -19.65234 -19.25483 -18.14523 -17.70414 -17.14870 -17.12766 -16.72385 -16.52082 -15.85392 -15.66156 -15.60890 -15.39515 -15.12134 -14.91237 -14.68677 -14.40885 -13.98341 -13.69159 -13.60354 -13.34829 -13.27889 -13.23772 -13.02745 -12.79015 -12.69974 -12.59256 -12.40289 -11.98550 -11.89843 -11.81949 -11.68902 -11.60991 -11.45985 -11.18620 -11.03605 -10.55966 -10.28218 -9.73111 -9.45119 -9.02871 -8.52989 -6.24371 0.54789 0.94900 1.30297 1.44378 1.49034 1.50277 1.52336 1.90048 2.04808 2.23761 2.66430 2.85145 3.07584 3.43239 3.50999 3.59188 3.72604 3.80753 3.87930 4.03678 4.13162 4.28079 4.30822 4.37066 4.38868 4.41675 4.50339 4.58996 4.65780 4.72083 4.79121 4.84650 4.95836 5.03833 5.07304 5.14331 5.15600 5.27896 5.39447 5.54091 5.69368 5.96444 6.04071 6.09693 6.26296 6.33513 6.92097 7.03790 7.42107 8.59220 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.016143 B = 0.002149 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.107900 B =13027.120032 C =14572.269214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.104 3.896 3 H 0.067 0.933 4 N -0.695 5.695 5 C 0.132 3.868 6 C 0.011 3.989 7 C -0.059 4.059 8 N -0.308 5.308 9 N -0.113 5.113 10 N -0.364 5.364 11 H 0.462 0.538 12 C -0.091 4.091 13 H 0.087 0.913 14 C -0.109 4.109 15 C 0.085 3.915 16 N -0.615 5.615 17 C 0.545 3.455 18 O -0.565 6.565 19 C -0.102 4.102 20 S -0.177 6.177 21 C -0.528 4.528 22 H 0.063 0.937 23 C 0.046 3.954 24 N -0.915 5.915 25 Si 0.913 3.087 26 H -0.263 1.263 27 H -0.258 1.258 28 H -0.238 1.238 29 C 0.103 3.897 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.343 0.657 34 H 0.081 0.919 35 H 0.111 0.889 36 H 0.206 0.794 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.277 0.723 44 H 0.061 0.939 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.804 11.124 21.388 33.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.005 4.005 3 H 0.085 0.915 4 N -0.328 5.328 5 C 0.002 3.998 6 C -0.125 4.125 7 C -0.218 4.218 8 N -0.174 5.174 9 N -0.093 5.093 10 N -0.087 5.087 11 H 0.311 0.689 12 C -0.111 4.111 13 H 0.106 0.894 14 C -0.147 4.147 15 C -0.037 4.037 16 N -0.349 5.349 17 C 0.333 3.667 18 O -0.443 6.443 19 C -0.253 4.253 20 S 0.049 5.951 21 C -0.675 4.675 22 H 0.081 0.919 23 C -0.159 4.159 24 N -0.553 5.553 25 Si 0.735 3.265 26 H -0.188 1.188 27 H -0.182 1.182 28 H -0.162 1.162 29 C -0.019 4.019 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.162 0.838 34 H 0.099 0.901 35 H 0.129 0.871 36 H 0.222 0.778 37 H 0.127 0.873 38 H 0.115 0.885 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -21.752 9.420 23.763 33.564 hybrid contribution 0.182 0.788 -2.380 2.514 sum -21.570 10.208 21.383 32.042 Atomic orbital electron populations 1.21801 0.92795 1.02383 1.02601 1.21477 0.96797 0.95928 0.86286 0.91525 1.60615 1.34228 1.33253 1.04715 1.20535 1.03119 0.92098 0.84049 1.22442 0.91696 1.00985 0.97399 1.23944 0.98565 1.03341 0.95951 1.75086 1.12149 1.13223 1.16921 1.78251 0.96359 1.20179 1.14518 1.45102 1.13169 1.32584 1.17823 0.68905 1.22499 0.91714 1.01254 0.95623 0.89425 1.22703 0.98209 1.01401 0.92414 1.22430 0.85937 0.99895 0.95411 1.48389 1.15206 1.62503 1.08839 1.19652 0.81131 0.76574 0.89342 1.90689 1.43089 1.49741 1.60823 1.23197 1.00727 1.05888 0.95451 1.84739 1.19814 1.84120 1.06388 1.22424 1.06081 1.49010 0.90017 0.91875 1.25549 1.00900 0.94335 0.95162 1.70009 1.32546 1.46170 1.06532 0.85883 0.79580 0.80322 0.80683 1.18762 1.18209 1.16157 1.22441 0.96599 1.01627 0.81241 0.90879 0.92744 0.91809 0.83755 0.90122 0.87117 0.77750 0.87342 0.88496 0.90353 0.90806 0.87148 0.87349 0.91327 0.92098 0.90780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.46 9.26 71.98 0.67 0.21 16 2 C 0.10 0.53 2.16 44.92 0.10 0.63 16 3 H 0.07 0.22 7.77 -2.38 -0.02 0.20 16 4 N -0.69 -4.89 6.30 -495.58 -3.12 -8.01 16 5 C 0.13 0.57 6.05 85.56 0.52 1.08 16 6 C 0.01 0.11 6.82 41.35 0.28 0.39 16 7 C -0.06 -0.94 11.99 83.73 1.00 0.07 16 8 N -0.31 -7.14 12.41 -58.26 -0.72 -7.86 16 9 N -0.11 -2.32 13.38 37.02 0.50 -1.82 16 10 N -0.36 -4.24 6.98 -47.79 -0.33 -4.57 16 11 H 0.46 2.01 8.96 -219.97 -1.97 0.04 16 12 C -0.09 -0.87 2.70 -9.40 -0.03 -0.89 16 13 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 14 C -0.11 -0.80 5.58 31.79 0.18 -0.62 16 15 C 0.09 1.31 6.49 86.73 0.56 1.88 16 16 N -0.61 -14.72 3.33 -811.78 -2.70 -17.42 16 17 C 0.55 19.26 7.87 87.65 0.69 19.95 16 18 O -0.56 -24.69 16.12 -3.02 -0.05 -24.74 16 19 C -0.10 -3.90 5.35 71.23 0.38 -3.52 16 20 S -0.18 -9.04 18.55 -56.49 -1.05 -10.09 16 21 C -0.53 -30.72 10.04 67.96 0.68 -30.04 16 22 H 0.06 3.86 8.03 -2.91 -0.02 3.84 16 23 C 0.05 2.71 5.50 84.86 0.47 3.18 16 24 N -0.91 -55.47 13.97 21.65 0.30 -55.17 16 25 Si 0.91 45.14 27.74 68.60 1.90 47.04 16 26 H -0.26 -12.71 7.11 99.48 0.71 -12.01 16 27 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 28 H -0.24 -11.76 6.74 99.48 0.67 -11.09 16 29 C 0.10 1.81 5.44 86.86 0.47 2.28 16 30 H 0.07 0.12 7.50 -2.38 -0.02 0.10 16 31 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.06 0.12 7.45 -2.39 -0.02 0.10 16 33 H 0.34 3.59 6.96 -89.69 -0.62 2.96 16 34 H 0.08 0.19 8.06 -2.38 -0.02 0.17 16 35 H 0.11 0.06 7.44 -2.39 -0.02 0.04 16 36 H 0.21 2.28 8.06 -2.91 -0.02 2.26 16 37 H 0.11 0.41 8.13 -2.38 -0.02 0.39 16 38 H 0.10 0.43 8.01 -2.38 -0.02 0.41 16 39 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 40 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 42 H 0.11 3.86 8.14 -2.40 -0.02 3.85 16 43 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 44 H 0.06 1.31 7.52 -2.39 -0.02 1.29 16 45 H 0.07 1.16 8.04 -2.39 -0.02 1.14 16 Total: -1.00 -82.43 384.06 -0.91 -83.34 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -1.61 Total: 4.71 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: 5.98 Total: -5.40 kcal Atomic # 7 Polarization: -88.78 SS G_CDS: -6.08 Total: -94.86 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.05 Total: -24.74 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.90 Total: 47.04 kcal Atomic # 16 Polarization: -9.04 SS G_CDS: -1.05 Total: -10.09 kcal Total: -82.43 -0.91 -83.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575701741.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.442 kcal (2) G-P(sol) polarization free energy of solvation -82.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds