Wall clock time and date at job start Sat Apr 11 2020 05:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47329 * 2 1 4 4 N 1.46896 * 109.46774 * 239.99899 * 2 1 3 5 5 C 1.46904 * 110.99985 * 85.00385 * 4 2 1 6 6 C 1.50703 * 109.47313 * 180.02562 * 5 4 2 7 7 C 1.35345 * 126.91388 * 94.99570 * 6 5 4 8 8 N 1.33777 * 106.49732 * 179.97438 * 7 6 5 9 9 N 1.28627 * 108.88491 * 0.02562 * 8 7 6 10 10 N 1.28723 * 110.18012 * 359.75568 * 9 8 7 11 11 H 0.96998 * 125.86921 * 180.23646 * 10 9 8 12 12 C 1.52998 * 109.47099 * 120.00335 * 2 1 3 13 13 H 1.09004 * 110.88721 * 63.87782 * 12 2 1 14 14 C 1.55162 * 111.00416 * 299.99749 * 12 2 1 15 15 C 1.54327 * 102.94028 * 206.38723 * 14 12 2 16 16 N 1.47025 * 107.27046 * 22.19447 * 15 14 12 17 17 C 1.34777 * 125.64375 * 181.02591 * 16 15 14 18 18 O 1.21278 * 119.99854 * 180.02562 * 17 16 15 19 19 C 1.50703 * 120.00161 * 0.02562 * 17 16 15 20 20 S 1.81002 * 109.47178 * 180.02562 * 19 17 16 21 21 C 1.76198 * 100.00092 * 180.02562 * 20 19 17 22 22 H 1.08004 * 120.00019 * 0.02562 * 21 20 19 23 23 C 1.38795 * 119.99810 * 179.97438 * 21 20 19 24 24 N 1.31635 * 119.99575 * 180.02562 * 23 21 20 25 25 Si 1.86793 * 120.00242 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.47244 * 90.00194 * 25 23 21 27 27 H 1.48498 * 109.47205 * 209.99923 * 25 23 21 28 28 H 1.48496 * 109.47344 * 330.00405 * 25 23 21 29 29 C 1.47423 * 108.70465 * 1.28114 * 16 15 14 30 30 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46869 * 300.00279 * 1 2 3 32 32 H 1.09001 * 109.47584 * 59.99543 * 1 2 3 33 33 H 1.00898 * 111.00155 * 208.95496 * 4 2 1 34 34 H 1.09004 * 109.46588 * 299.99701 * 5 4 2 35 35 H 1.08995 * 109.47282 * 59.99639 * 5 4 2 36 36 H 1.08000 * 126.75219 * 359.94441 * 7 6 5 37 37 H 1.08993 * 110.71824 * 88.02262 * 14 12 2 38 38 H 1.09003 * 110.71518 * 324.74627 * 14 12 2 39 39 H 1.08997 * 109.87929 * 262.77365 * 15 14 12 40 40 H 1.09002 * 110.00836 * 141.68088 * 15 14 12 41 41 H 1.09002 * 109.47152 * 60.00245 * 19 17 16 42 42 H 1.09001 * 109.46980 * 300.00345 * 19 17 16 43 43 H 0.97007 * 119.99682 * 180.02562 * 24 23 21 44 44 H 1.09001 * 110.35984 * 94.48851 * 29 16 15 45 45 H 1.08995 * 110.36572 * 216.80694 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0824 0.2226 -2.3469 6 6 2.5872 -0.5218 -3.5561 7 6 1.8399 -1.1045 -4.5224 8 7 2.6995 -1.6452 -5.3932 9 7 3.8995 -1.4131 -4.9924 10 7 3.8788 -0.7379 -3.8966 11 1 4.6556 -0.4375 -3.3994 12 6 2.0400 -0.7213 1.2492 13 1 1.7468 -1.7711 1.2387 14 6 1.5426 -0.0178 2.5396 15 6 2.6245 -0.3902 3.5752 16 7 3.8423 -0.7380 2.8284 17 6 5.0090 -1.1387 3.3712 18 8 5.9526 -1.4003 2.6555 19 6 5.1412 -1.2616 4.8673 20 16 6.8138 -1.8155 5.2818 21 6 6.6908 -1.8723 7.0386 22 1 5.7638 -1.6047 7.5240 23 6 7.7849 -2.2619 7.7986 24 7 7.6928 -2.3047 9.1110 25 14 9.3875 -2.7267 6.9590 26 1 10.2365 -1.5176 6.8088 27 1 10.1031 -3.7348 7.7818 28 1 9.0971 -3.2971 5.6191 29 6 3.5776 -0.5699 1.3878 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 2.9172 -1.1206 -1.0288 34 1 1.0870 0.6163 -2.5525 35 1 2.7588 1.0461 -2.1182 36 1 0.7617 -1.1288 -4.5791 37 1 0.5702 -0.4073 2.8408 38 1 1.4998 1.0621 2.3980 39 1 2.2944 -1.2453 4.1650 40 1 2.8212 0.4583 4.2306 41 1 4.4159 -1.9860 5.2379 42 1 4.9549 -0.2921 5.3294 43 1 8.4576 -2.5767 9.6422 44 1 3.8952 0.4188 1.0568 45 1 4.0878 -1.3446 0.8155 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575701743.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:17 Heat of formation + Delta-G solvation = 30.763090 kcal Electronic energy + Delta-G solvation = -26243.590843 eV Core-core repulsion = 22423.060667 eV Total energy + Delta-G solvation = -3820.530176 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.28438 -41.22176 -39.31987 -37.32490 -34.70104 -34.58722 -33.91047 -32.21605 -31.14239 -30.12883 -29.23540 -27.87292 -26.53820 -24.51333 -23.98639 -23.12626 -22.52819 -21.02501 -20.77669 -19.64845 -19.20097 -18.17792 -17.77146 -17.16023 -17.15371 -16.76610 -16.62547 -15.85102 -15.68572 -15.57280 -15.37393 -15.07058 -14.92759 -14.59181 -14.41857 -14.05840 -13.72008 -13.67286 -13.37234 -13.28356 -13.23324 -13.03813 -12.71531 -12.69636 -12.61201 -12.30754 -12.10630 -11.90443 -11.83015 -11.70886 -11.62153 -11.44777 -11.19625 -11.06011 -10.57797 -10.26398 -9.75643 -9.43632 -9.04255 -8.54028 -6.25651 0.53853 0.93487 1.28913 1.42981 1.46470 1.51018 1.54249 1.84879 2.02785 2.22514 2.64825 2.84044 3.07336 3.39769 3.52222 3.58523 3.71147 3.74246 3.86955 4.05484 4.11541 4.25775 4.30516 4.37111 4.38944 4.40680 4.50279 4.59787 4.63227 4.71472 4.78958 4.83812 4.94284 5.04999 5.07710 5.17647 5.20144 5.26699 5.37831 5.57296 5.68248 5.90637 6.03046 6.08663 6.24746 6.30893 6.90918 7.00955 7.42225 8.58194 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.016535 B = 0.002124 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.937264 B =13179.072970 C =14706.537436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.105 3.895 3 H 0.065 0.935 4 N -0.691 5.691 5 C 0.135 3.865 6 C 0.005 3.995 7 C -0.041 4.041 8 N -0.307 5.307 9 N -0.116 5.116 10 N -0.378 5.378 11 H 0.458 0.542 12 C -0.092 4.092 13 H 0.088 0.912 14 C -0.109 4.109 15 C 0.085 3.915 16 N -0.615 5.615 17 C 0.546 3.454 18 O -0.565 6.565 19 C -0.102 4.102 20 S -0.177 6.177 21 C -0.528 4.528 22 H 0.063 0.937 23 C 0.046 3.954 24 N -0.915 5.915 25 Si 0.914 3.086 26 H -0.262 1.262 27 H -0.258 1.258 28 H -0.238 1.238 29 C 0.103 3.897 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.339 0.661 34 H 0.124 0.876 35 H 0.065 0.935 36 H 0.214 0.786 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.277 0.723 44 H 0.074 0.926 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.315 10.414 -21.682 31.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.005 4.005 3 H 0.083 0.917 4 N -0.324 5.324 5 C 0.005 3.995 6 C -0.131 4.131 7 C -0.200 4.200 8 N -0.173 5.173 9 N -0.095 5.095 10 N -0.101 5.101 11 H 0.306 0.694 12 C -0.112 4.112 13 H 0.106 0.894 14 C -0.147 4.147 15 C -0.037 4.037 16 N -0.349 5.349 17 C 0.334 3.666 18 O -0.444 6.444 19 C -0.253 4.253 20 S 0.050 5.950 21 C -0.676 4.676 22 H 0.081 0.919 23 C -0.160 4.160 24 N -0.552 5.552 25 Si 0.736 3.264 26 H -0.186 1.186 27 H -0.183 1.183 28 H -0.162 1.162 29 C -0.019 4.019 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.157 0.843 34 H 0.142 0.858 35 H 0.083 0.917 36 H 0.231 0.769 37 H 0.126 0.874 38 H 0.116 0.884 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.620 9.010 -23.854 31.573 hybrid contribution 0.641 0.940 2.526 2.770 sum -17.979 9.950 -21.328 29.616 Atomic orbital electron populations 1.21810 0.92689 1.02517 1.02654 1.21475 0.96987 0.95750 0.86242 0.91712 1.60593 1.33743 1.33387 1.04631 1.20562 1.03208 0.91571 0.84186 1.22524 0.83595 1.05603 1.01343 1.23946 1.02569 1.00882 0.92598 1.75086 0.95915 1.20345 1.25931 1.78282 1.17972 1.13125 1.00161 1.45228 1.09737 1.36789 1.18345 0.69377 1.22549 0.91553 1.01561 0.95531 0.89357 1.22696 0.97972 1.02247 0.91776 1.22431 0.83819 1.01343 0.96092 1.48392 1.11356 1.66338 1.08846 1.19646 0.81715 0.76127 0.89144 1.90680 1.39253 1.51191 1.63285 1.23203 1.00692 1.06198 0.95230 1.84714 1.15593 1.88604 1.06099 1.22423 1.02376 1.52595 0.90185 0.91890 1.25555 1.01783 0.93694 0.94937 1.70015 1.32971 1.46765 1.05491 0.85875 0.79875 0.79938 0.80735 1.18630 1.18268 1.16217 1.22505 0.97138 1.01399 0.80838 0.92667 0.90856 0.91685 0.84303 0.85770 0.91738 0.76921 0.87356 0.88446 0.90800 0.90363 0.87322 0.87190 0.91321 0.90756 0.92106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.53 9.19 71.98 0.66 0.13 16 2 C 0.10 0.55 2.18 44.92 0.10 0.64 16 3 H 0.07 0.22 7.73 -2.39 -0.02 0.20 16 4 N -0.69 -4.84 6.30 -495.58 -3.12 -7.96 16 5 C 0.14 0.58 6.05 85.56 0.52 1.10 16 6 C 0.00 0.05 6.82 41.36 0.28 0.33 16 7 C -0.04 -0.59 11.99 83.73 1.00 0.41 16 8 N -0.31 -6.80 12.41 -58.26 -0.72 -7.52 16 9 N -0.12 -2.44 13.38 37.02 0.50 -1.95 16 10 N -0.38 -4.84 6.98 -47.79 -0.33 -5.17 16 11 H 0.46 3.09 8.96 -219.96 -1.97 1.12 16 12 C -0.09 -0.86 2.68 -9.32 -0.02 -0.89 16 13 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 14 C -0.11 -0.79 5.28 31.79 0.17 -0.62 16 15 C 0.09 1.29 6.48 86.73 0.56 1.86 16 16 N -0.61 -14.39 3.32 -811.36 -2.70 -17.09 16 17 C 0.55 18.95 7.87 87.66 0.69 19.64 16 18 O -0.57 -24.21 16.12 -3.02 -0.05 -24.26 16 19 C -0.10 -3.89 5.35 71.24 0.38 -3.51 16 20 S -0.18 -8.94 18.55 -56.49 -1.05 -9.99 16 21 C -0.53 -30.60 10.04 67.95 0.68 -29.92 16 22 H 0.06 3.84 8.03 -2.91 -0.02 3.81 16 23 C 0.05 2.68 5.50 84.86 0.47 3.15 16 24 N -0.91 -55.27 13.97 21.65 0.30 -54.96 16 25 Si 0.91 44.83 27.74 68.60 1.90 46.74 16 26 H -0.26 -12.50 7.11 99.48 0.71 -11.79 16 27 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 28 H -0.24 -11.71 6.74 99.48 0.67 -11.04 16 29 C 0.10 1.73 5.69 86.93 0.49 2.23 16 30 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.07 0.14 7.28 -2.39 -0.02 0.12 16 32 H 0.06 0.17 7.45 -2.39 -0.02 0.15 16 33 H 0.34 3.15 7.32 -89.70 -0.66 2.49 16 34 H 0.12 0.15 7.44 -2.39 -0.02 0.13 16 35 H 0.06 0.11 8.05 -2.39 -0.02 0.10 16 36 H 0.21 1.70 8.06 -2.91 -0.02 1.67 16 37 H 0.11 0.43 8.11 -2.39 -0.02 0.41 16 38 H 0.10 0.42 8.04 -2.39 -0.02 0.41 16 39 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 42 H 0.11 3.84 8.14 -2.39 -0.02 3.83 16 43 H 0.28 15.48 8.31 -92.70 -0.77 14.71 16 44 H 0.07 1.10 7.99 -2.39 -0.02 1.08 16 45 H 0.06 1.23 7.63 -2.39 -0.02 1.21 16 Total: -1.00 -81.80 384.09 -0.93 -82.73 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -1.64 Total: 4.87 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: 5.98 Total: -5.44 kcal Atomic # 7 Polarization: -88.58 SS G_CDS: -6.08 Total: -94.66 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.05 Total: -24.26 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.90 Total: 46.74 kcal Atomic # 16 Polarization: -8.94 SS G_CDS: -1.05 Total: -9.99 kcal Total: -81.80 -0.93 -82.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575701743.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.496 kcal (2) G-P(sol) polarization free energy of solvation -81.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds