Wall clock time and date at job start Sat Apr 11 2020 05:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34769 * 117.00398 * 2 1 4 4 O 1.21534 * 119.99864 * 359.97438 * 3 2 1 5 5 C 1.47230 * 120.00468 * 180.02562 * 3 2 1 6 6 C 1.36505 * 127.19841 * 0.02562 * 5 3 2 7 7 O 1.33625 * 108.38241 * 179.74230 * 6 5 3 8 8 C 1.34223 * 110.92600 * 359.97438 * 7 6 5 9 9 C 1.50697 * 125.42883 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.47046 * 205.02937 * 9 8 7 11 11 C 1.52999 * 109.46833 * 85.02629 * 9 8 7 12 12 O 1.45200 * 109.46946 * 325.03164 * 9 8 7 13 13 C 1.34230 * 116.99602 * 209.99826 * 12 9 8 14 14 O 1.20826 * 120.00491 * 0.02562 * 13 12 9 15 15 C 1.50705 * 119.99797 * 179.97438 * 13 12 9 16 16 H 1.08996 * 109.47216 * 40.00357 * 15 13 12 17 17 N 1.46903 * 109.46830 * 159.99884 * 15 13 12 18 18 C 1.52994 * 109.47274 * 279.99985 * 15 13 12 19 19 C 1.53001 * 109.47093 * 175.00319 * 18 15 13 20 20 C 1.53007 * 109.47335 * 180.02562 * 19 18 15 21 21 C 1.50694 * 109.47366 * 179.97438 * 20 19 18 22 22 H 1.07998 * 119.99953 * 359.97438 * 21 20 19 23 23 C 1.37871 * 120.00304 * 179.97438 * 21 20 19 24 24 N 1.31516 * 120.00280 * 179.97438 * 23 21 20 25 25 Si 1.86806 * 119.99696 * 359.97438 * 23 21 20 26 26 H 1.48506 * 109.46951 * 90.00323 * 25 23 21 27 27 H 1.48498 * 109.47170 * 209.99977 * 25 23 21 28 28 H 1.48493 * 109.47120 * 330.00285 * 25 23 21 29 29 C 1.34160 * 109.14046 * 0.02562 * 8 7 6 30 30 H 1.09001 * 109.47271 * 59.99758 * 1 2 3 31 31 H 1.09002 * 109.47432 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46825 * 299.99936 * 1 2 3 33 33 H 1.08001 * 125.80602 * 359.71656 * 6 5 3 34 34 H 1.09000 * 109.47555 * 299.99995 * 11 9 8 35 35 H 1.08999 * 109.47169 * 60.00331 * 11 9 8 36 36 H 1.09005 * 109.47238 * 180.02562 * 11 9 8 37 37 H 1.00899 * 111.00030 * 296.04951 * 17 15 13 38 38 H 1.00896 * 111.00215 * 60.00410 * 17 15 13 39 39 H 1.09007 * 109.47235 * 294.99781 * 18 15 13 40 40 H 1.08997 * 109.47115 * 55.00135 * 18 15 13 41 41 H 1.09001 * 109.47020 * 299.99556 * 19 18 15 42 42 H 1.08997 * 109.47290 * 59.99923 * 19 18 15 43 43 H 1.09001 * 109.46408 * 299.99568 * 20 19 18 44 44 H 1.08997 * 109.47298 * 59.99003 * 20 19 18 45 45 H 0.97003 * 119.99563 * 179.97438 * 24 23 21 46 46 H 1.08000 * 127.01968 * 179.97438 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2008 0.0000 4 8 1.4020 2.2201 -0.0005 5 6 3.5342 1.2778 -0.0006 6 6 4.4152 0.2352 -0.0016 7 8 5.6558 0.7318 -0.0075 8 6 5.6349 2.0739 -0.0110 9 6 6.8491 2.9664 -0.0173 10 1 6.5917 3.9330 0.4157 11 6 7.3293 3.1638 -1.4565 12 8 7.9060 2.3513 0.7655 13 6 8.7668 3.1764 1.3819 14 8 8.6410 4.3730 1.2714 15 6 9.8895 2.6103 2.2127 16 1 10.3059 1.7357 1.7131 17 7 10.9379 3.6262 2.3763 18 6 9.3528 2.2053 3.5870 19 6 10.4621 1.5173 4.3852 20 6 9.9253 1.1118 5.7594 21 6 11.0177 0.4336 6.5453 22 1 11.9968 0.3043 6.1083 23 6 10.7672 -0.0219 7.8223 24 7 11.7205 -0.6143 8.5080 25 14 9.0739 0.2023 8.5785 26 1 8.2293 -0.9768 8.2596 27 1 9.2033 0.3344 10.0520 28 1 8.4430 1.4274 8.0252 29 6 4.3608 2.4940 -0.0069 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 4.1541 -0.8127 0.0021 34 1 7.5867 2.1972 -1.8896 35 1 6.5359 3.6256 -2.0442 36 1 8.2079 3.8091 -1.4611 37 1 11.3532 3.8635 1.4879 38 1 10.5767 4.4477 2.8374 39 1 9.0176 3.0937 4.1224 40 1 8.5156 1.5187 3.4623 41 1 10.7974 0.6290 3.8499 42 1 11.2994 2.2040 4.5100 43 1 9.5898 1.9999 6.2949 44 1 9.0881 0.4251 5.6343 45 1 11.5442 -0.9344 9.4066 46 1 4.0133 3.5165 -0.0078 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578886283.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:40 Heat of formation + Delta-G solvation = -167.957672 kcal Electronic energy + Delta-G solvation = -28646.324283 eV Core-core repulsion = 24309.838555 eV Total energy + Delta-G solvation = -4336.485728 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.15383 -40.92420 -40.51425 -37.48698 -36.81345 -35.95881 -33.82676 -33.43442 -32.99535 -31.60152 -29.63851 -28.52295 -28.09162 -26.04679 -24.42624 -24.17315 -22.45748 -21.63616 -20.74646 -20.32705 -20.05548 -18.55617 -17.97492 -17.54198 -17.01787 -16.85110 -16.63160 -16.47807 -16.28815 -16.27170 -15.72710 -15.00629 -14.57673 -14.11790 -14.09332 -13.85669 -13.70133 -13.60068 -13.44318 -13.19744 -13.17845 -12.65742 -12.56821 -12.43898 -12.09665 -11.83783 -11.81383 -11.45969 -11.25703 -11.20649 -11.07215 -11.02661 -10.78248 -10.67996 -10.37048 -9.85199 -9.70221 -9.53605 -9.25504 -9.14382 -8.95625 -8.48543 -5.99140 -3.96314 0.70048 1.31705 1.92038 2.08656 2.31190 2.40617 2.62320 3.33909 3.41364 3.45497 3.88304 4.09910 4.26033 4.39020 4.42002 4.49736 4.56034 4.63749 4.67024 4.75326 4.82177 4.95962 5.01941 5.11421 5.17158 5.20770 5.21966 5.35135 5.39369 5.59353 5.67042 5.78151 5.88503 5.89236 6.06415 6.25714 6.47468 6.62433 6.73603 6.84649 6.99486 7.24633 7.32036 7.41765 7.47659 7.52223 7.85612 8.60574 9.07209 9.63929 11.14455 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.008990 B = 0.002505 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3113.744629 B =11172.826609 C =13671.502431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.358 6.358 3 C 0.540 3.460 4 O -0.504 6.504 5 C -0.235 4.235 6 C 0.070 3.930 7 O -0.150 6.150 8 C -0.007 4.007 9 C 0.166 3.834 10 H 0.116 0.884 11 C -0.167 4.167 12 O -0.342 6.342 13 C 0.433 3.567 14 O -0.516 6.516 15 C 0.106 3.894 16 H 0.119 0.881 17 N -0.804 5.804 18 C -0.109 4.109 19 C -0.092 4.092 20 C -0.016 4.016 21 C -0.516 4.516 22 H 0.072 0.928 23 C 0.064 3.936 24 N -0.905 5.905 25 Si 0.879 3.121 26 H -0.278 1.278 27 H -0.289 1.289 28 H -0.266 1.266 29 C -0.141 4.141 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.065 0.935 33 H 0.226 0.774 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.343 0.657 38 H 0.353 0.647 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.054 0.946 42 H 0.070 0.930 43 H 0.014 0.986 44 H 0.009 0.991 45 H 0.262 0.738 46 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.927 4.036 -24.282 30.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.275 6.275 3 C 0.385 3.615 4 O -0.393 6.393 5 C -0.237 4.237 6 C -0.002 4.002 7 O -0.044 6.044 8 C -0.056 4.056 9 C 0.110 3.890 10 H 0.134 0.866 11 C -0.224 4.224 12 O -0.258 6.258 13 C 0.274 3.726 14 O -0.404 6.404 15 C -0.009 4.009 16 H 0.137 0.863 17 N -0.333 5.333 18 C -0.147 4.147 19 C -0.129 4.129 20 C -0.054 4.054 21 C -0.554 4.554 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.545 5.545 25 Si 0.707 3.293 26 H -0.204 1.204 27 H -0.215 1.215 28 H -0.191 1.191 29 C -0.160 4.160 30 H 0.083 0.917 31 H 0.123 0.877 32 H 0.084 0.916 33 H 0.242 0.758 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.156 0.844 38 H 0.168 0.832 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.032 0.968 44 H 0.027 0.973 45 H 0.072 0.928 46 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -17.528 3.921 -23.709 29.744 hybrid contribution -2.104 0.866 -0.157 2.281 sum -19.632 4.787 -23.866 31.272 Atomic orbital electron populations 1.23310 0.75432 1.03979 1.02811 1.86528 1.23992 1.32388 1.84586 1.19949 0.87409 0.81558 0.72612 1.90863 1.66486 1.35989 1.45972 1.20421 0.90581 0.94308 1.18429 1.24871 0.80166 0.99685 0.95462 1.83873 1.29976 1.20990 1.69540 1.21864 0.95288 0.80794 1.07613 1.21050 0.81427 0.93521 0.92985 0.86621 1.22241 1.02927 1.03730 0.93532 1.86749 1.38502 1.41132 1.59393 1.26169 0.83181 0.86251 0.76973 1.90641 1.72443 1.16833 1.60445 1.21670 0.86171 0.96918 0.96092 0.86327 1.59123 1.30288 1.16795 1.27140 1.21755 1.00349 1.01249 0.91351 1.21376 0.96383 0.99091 0.96068 1.19607 0.96834 0.96058 0.92870 1.21158 0.98362 1.36843 0.99036 0.90947 1.25044 0.96719 0.94766 0.97119 1.69923 1.32721 1.40186 1.11639 0.86787 0.85208 0.79100 0.78215 1.20381 1.21492 1.19080 1.22349 0.89760 0.99117 1.04794 0.91717 0.87719 0.91636 0.75801 0.90740 0.90005 0.90694 0.84416 0.83248 0.91787 0.91046 0.92719 0.91137 0.96800 0.97305 0.92846 0.81650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.57 101.05 1.07 1.29 16 2 O -0.36 -3.04 10.42 -40.68 -0.42 -3.46 16 3 C 0.54 5.73 7.95 34.38 0.27 6.00 16 4 O -0.50 -6.67 16.77 -19.29 -0.32 -6.99 16 5 C -0.23 -2.30 6.31 -103.30 -0.65 -2.95 16 6 C 0.07 0.55 11.94 30.11 0.36 0.91 16 7 O -0.15 -1.50 10.49 3.28 0.03 -1.46 16 8 C -0.01 -0.07 6.19 -35.75 -0.22 -0.29 16 9 C 0.17 1.62 3.01 -27.88 -0.08 1.54 16 10 H 0.12 1.13 7.15 -51.93 -0.37 0.76 16 11 C -0.17 -1.27 9.53 37.16 0.35 -0.91 16 12 O -0.34 -4.06 9.84 -42.24 -0.42 -4.47 16 13 C 0.43 5.37 7.17 36.01 0.26 5.63 16 14 O -0.52 -7.06 15.47 -18.75 -0.29 -7.35 16 15 C 0.11 1.32 3.26 -68.86 -0.22 1.09 16 16 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 17 N -0.80 -9.49 8.44 -5.65 -0.05 -9.54 16 18 C -0.11 -1.66 4.84 -26.73 -0.13 -1.79 16 19 C -0.09 -1.75 5.04 -26.73 -0.13 -1.89 16 20 C -0.02 -0.39 4.04 -27.88 -0.11 -0.50 16 21 C -0.52 -14.81 9.66 -34.45 -0.33 -15.14 16 22 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 23 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 24 N -0.91 -28.20 13.96 55.43 0.77 -27.43 16 25 Si 0.88 22.01 27.47 -169.99 -4.67 17.34 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 H -0.27 -6.41 6.54 56.52 0.37 -6.05 16 29 C -0.14 -1.38 10.89 -37.45 -0.41 -1.79 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.23 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.34 3.33 9.06 -39.29 -0.36 2.98 16 38 H 0.35 4.20 8.58 -39.29 -0.34 3.86 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.07 1.39 7.75 -51.93 -0.40 0.99 16 43 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 44 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 45 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 46 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 400.63 15.07 6.04 6.04 Total: -1.00 -35.44 400.63 -6.30 -41.74 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -6.89 Total: 2.59 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -0.08 Total: -7.00 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.73 Total: -36.97 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -1.42 Total: -23.74 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.44 -6.30 -41.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578886283.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.214 kcal (2) G-P(sol) polarization free energy of solvation -35.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds