Wall clock time and date at job start Sat Apr 11 2020 05:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34773 * 117.00082 * 2 1 4 4 O 1.21540 * 119.99870 * 359.97438 * 3 2 1 5 5 C 1.47229 * 120.00538 * 179.97438 * 3 2 1 6 6 C 1.36498 * 127.19853 * 359.95929 * 5 3 2 7 7 O 1.33629 * 108.38324 * 179.79128 * 6 5 3 8 8 C 1.34220 * 110.92159 * 0.40702 * 7 6 5 9 9 C 1.50705 * 125.42242 * 179.85133 * 8 7 6 10 10 H 1.09003 * 109.46461 * 159.69173 * 9 8 7 11 11 C 1.53001 * 109.47000 * 279.69038 * 9 8 7 12 12 O 1.45197 * 109.47191 * 39.69407 * 9 8 7 13 13 C 1.34231 * 116.99978 * 149.99639 * 12 9 8 14 14 O 1.20830 * 119.99684 * 0.02562 * 13 12 9 15 15 C 1.50697 * 120.00189 * 179.97438 * 13 12 9 16 16 H 1.08996 * 109.47188 * 40.00351 * 15 13 12 17 17 N 1.46905 * 109.47125 * 160.00129 * 15 13 12 18 18 C 1.53001 * 109.47213 * 279.99973 * 15 13 12 19 19 C 1.52995 * 109.47332 * 174.99878 * 18 15 13 20 20 C 1.52992 * 109.47559 * 180.02562 * 19 18 15 21 21 C 1.50701 * 109.47771 * 180.02562 * 20 19 18 22 22 H 1.08006 * 119.99318 * 0.02562 * 21 20 19 23 23 C 1.37872 * 120.00394 * 179.97438 * 21 20 19 24 24 N 1.31516 * 119.99893 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99983 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47054 * 90.00273 * 25 23 21 27 27 H 1.48500 * 109.47063 * 210.00105 * 25 23 21 28 28 H 1.48493 * 109.47176 * 329.99873 * 25 23 21 29 29 C 1.34150 * 109.14541 * 359.58747 * 8 7 6 30 30 H 1.08998 * 109.47966 * 300.00166 * 1 2 3 31 31 H 1.09003 * 109.46802 * 60.00627 * 1 2 3 32 32 H 1.09004 * 109.47151 * 179.97438 * 1 2 3 33 33 H 1.08004 * 125.80909 * 359.97438 * 6 5 3 34 34 H 1.08991 * 109.47298 * 300.00197 * 11 9 8 35 35 H 1.09003 * 109.46713 * 60.00424 * 11 9 8 36 36 H 1.08999 * 109.46674 * 179.97438 * 11 9 8 37 37 H 1.00901 * 110.99869 * 296.04907 * 17 15 13 38 38 H 1.00896 * 110.99543 * 60.00030 * 17 15 13 39 39 H 1.08997 * 109.47039 * 295.00606 * 18 15 13 40 40 H 1.09001 * 109.46723 * 55.00082 * 18 15 13 41 41 H 1.09001 * 109.46974 * 300.00562 * 19 18 15 42 42 H 1.09004 * 109.46840 * 59.99935 * 19 18 15 43 43 H 1.09001 * 109.47157 * 300.00108 * 20 19 18 44 44 H 1.09004 * 109.47376 * 59.99922 * 20 19 18 45 45 H 0.96998 * 119.99680 * 179.97438 * 24 23 21 46 46 H 1.08001 * 127.02790 * 180.27779 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4018 2.2201 -0.0005 5 6 3.5341 1.2780 0.0006 6 6 4.4152 0.2355 0.0019 7 8 5.6557 0.7322 -0.0026 8 6 5.6347 2.0742 0.0019 9 6 6.8490 2.9668 0.0021 10 1 6.5699 3.9597 -0.3506 11 6 7.4071 3.0684 1.4230 12 8 7.8607 2.4077 -0.8766 13 6 8.6880 3.2741 -1.4823 14 8 8.5708 4.4603 -1.2844 15 6 9.7636 2.7672 -2.4081 16 1 9.3689 1.9487 -3.0099 17 7 10.2031 3.8562 -3.2908 18 6 10.9520 2.2676 -1.5841 19 6 11.9904 1.6394 -2.5157 20 6 13.1785 1.1392 -1.6917 21 6 14.2017 0.5210 -2.6093 22 1 14.0226 0.4886 -3.6740 23 6 15.3668 -0.0022 -2.0900 24 7 15.5855 0.0387 -0.7938 25 14 16.6353 -0.7678 -3.2276 26 1 17.5946 0.2748 -3.6723 27 1 17.3676 -1.8379 -2.5037 28 1 15.9521 -1.3491 -4.4110 29 6 4.3607 2.4943 0.0006 30 1 -0.3635 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 4.1541 -0.8125 0.0031 34 1 6.6476 3.4881 2.0825 35 1 7.6861 2.0754 1.7756 36 1 8.2856 3.7136 1.4229 37 1 9.4516 4.1603 -3.8916 38 1 10.5734 4.6277 -2.7563 39 1 11.4017 3.1048 -1.0505 40 1 10.6089 1.5218 -0.8670 41 1 11.5405 0.8022 -3.0493 42 1 12.3334 2.3852 -3.2329 43 1 13.6285 1.9762 -1.1578 44 1 12.8352 0.3933 -0.9748 45 1 16.4050 -0.3298 -0.4284 46 1 4.0130 3.5168 -0.0009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578886362.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:43 Heat of formation + Delta-G solvation = -171.742156 kcal Electronic energy + Delta-G solvation = -28377.752204 eV Core-core repulsion = 24041.102368 eV Total energy + Delta-G solvation = -4336.649835 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.16106 -40.86047 -40.54058 -37.41256 -36.84332 -35.85438 -33.78652 -33.41470 -32.97794 -31.42493 -29.61842 -28.18152 -28.10682 -25.80690 -24.44386 -24.10338 -22.66239 -21.65135 -20.75745 -20.28326 -20.06305 -18.53467 -17.94715 -17.56790 -17.02406 -16.63412 -16.58000 -16.42434 -16.24528 -15.96301 -15.83799 -14.89813 -14.49117 -14.29915 -14.09921 -13.79423 -13.72461 -13.57619 -13.43780 -13.20308 -12.98468 -12.54132 -12.43377 -12.40945 -11.88468 -11.75030 -11.59238 -11.29052 -11.19169 -11.14023 -11.09380 -10.91453 -10.73060 -10.47530 -10.44496 -10.38514 -9.63783 -9.27014 -9.25803 -9.08955 -8.85941 -8.29342 -5.95015 -3.96591 0.67967 1.30587 1.98275 2.08315 2.30835 2.46303 2.60932 3.35598 3.41602 3.45296 3.90182 4.08263 4.31924 4.39987 4.49921 4.51079 4.60168 4.63613 4.70981 4.71820 4.81656 5.02658 5.04999 5.08421 5.25137 5.29936 5.33956 5.40973 5.42015 5.65156 5.76522 5.85682 5.90248 6.02268 6.14078 6.40624 6.47839 6.78097 6.89307 6.99439 7.20871 7.29136 7.32275 7.54120 7.74687 7.89718 8.06297 8.49384 9.10907 9.67168 11.16415 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.017198 B = 0.001807 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.672087 B =15491.017545 C =16276.343145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.358 6.358 3 C 0.540 3.460 4 O -0.505 6.505 5 C -0.236 4.236 6 C 0.069 3.931 7 O -0.150 6.150 8 C -0.004 4.004 9 C 0.166 3.834 10 H 0.116 0.884 11 C -0.170 4.170 12 O -0.342 6.342 13 C 0.434 3.566 14 O -0.517 6.517 15 C 0.105 3.895 16 H 0.117 0.883 17 N -0.804 5.804 18 C -0.105 4.105 19 C -0.100 4.100 20 C 0.019 3.981 21 C -0.517 4.517 22 H 0.056 0.944 23 C 0.055 3.945 24 N -0.897 5.897 25 Si 0.891 3.109 26 H -0.281 1.281 27 H -0.287 1.287 28 H -0.274 1.274 29 C -0.142 4.142 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.225 0.775 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.342 0.658 38 H 0.353 0.647 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.048 0.952 42 H 0.064 0.936 43 H 0.014 0.986 44 H 0.014 0.986 45 H 0.259 0.741 46 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.272 2.439 3.352 29.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.275 6.275 3 C 0.385 3.615 4 O -0.393 6.393 5 C -0.238 4.238 6 C -0.002 4.002 7 O -0.043 6.043 8 C -0.053 4.053 9 C 0.110 3.890 10 H 0.133 0.867 11 C -0.227 4.227 12 O -0.258 6.258 13 C 0.275 3.725 14 O -0.405 6.405 15 C -0.009 4.009 16 H 0.134 0.866 17 N -0.334 5.334 18 C -0.143 4.143 19 C -0.137 4.137 20 C -0.018 4.018 21 C -0.555 4.555 22 H 0.074 0.926 23 C -0.146 4.146 24 N -0.537 5.537 25 Si 0.719 3.281 26 H -0.207 1.207 27 H -0.213 1.213 28 H -0.199 1.199 29 C -0.161 4.161 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.123 0.877 33 H 0.242 0.758 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.154 0.846 38 H 0.168 0.832 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.033 0.967 44 H 0.032 0.968 45 H 0.069 0.931 46 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -28.631 2.362 3.267 28.914 hybrid contribution -0.604 0.370 0.092 0.714 sum -29.235 2.733 3.359 29.554 Atomic orbital electron populations 1.23309 0.75450 1.03971 1.02810 1.86529 1.23977 1.32406 1.84602 1.19958 0.87417 0.81542 0.72604 1.90864 1.66489 1.35989 1.45993 1.20422 0.90541 0.94340 1.18537 1.24870 0.80200 0.99669 0.95488 1.83886 1.29937 1.21064 1.69449 1.21905 0.95316 0.80745 1.07358 1.21051 0.82305 0.94077 0.91540 0.86685 1.22252 1.02605 1.04307 0.93509 1.86749 1.42091 1.41101 1.55871 1.26170 0.81711 0.85531 0.79081 1.90637 1.70323 1.17883 1.61615 1.21703 0.91088 0.96218 0.91915 0.86554 1.59134 1.37046 1.14493 1.22700 1.21723 0.93625 1.00737 0.98241 1.21547 0.95429 0.98983 0.97754 1.19126 0.91582 0.95994 0.95126 1.21273 1.02717 1.37752 0.93757 0.92623 1.25028 0.98283 0.96282 0.94983 1.69969 1.26060 1.46508 1.11139 0.86609 0.81642 0.78980 0.80852 1.20723 1.21335 1.19893 1.22364 0.89774 0.99087 1.04895 0.91686 0.91679 0.87724 0.75832 0.90103 0.90536 0.90430 0.84557 0.83245 0.91783 0.90990 0.93369 0.91773 0.96745 0.96785 0.93120 0.81665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.57 101.05 1.07 1.26 16 2 O -0.36 -2.82 10.42 -40.69 -0.42 -3.25 16 3 C 0.54 5.42 7.95 34.38 0.27 5.70 16 4 O -0.50 -6.40 16.78 -19.30 -0.32 -6.72 16 5 C -0.24 -2.20 6.31 -103.30 -0.65 -2.85 16 6 C 0.07 0.52 11.94 30.10 0.36 0.88 16 7 O -0.15 -1.48 10.52 5.77 0.06 -1.42 16 8 C 0.00 -0.04 6.17 -35.75 -0.22 -0.26 16 9 C 0.17 1.71 3.02 -27.88 -0.08 1.63 16 10 H 0.12 1.13 7.14 -51.93 -0.37 0.76 16 11 C -0.17 -1.55 9.53 37.16 0.35 -1.20 16 12 O -0.34 -4.27 9.86 -41.54 -0.41 -4.68 16 13 C 0.43 5.67 7.17 36.00 0.26 5.93 16 14 O -0.52 -7.38 15.47 -18.75 -0.29 -7.67 16 15 C 0.11 1.38 3.26 -68.86 -0.22 1.16 16 16 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16 17 N -0.80 -9.98 8.44 -5.65 -0.05 -10.03 16 18 C -0.11 -1.69 4.84 -26.73 -0.13 -1.82 16 19 C -0.10 -1.98 5.04 -26.74 -0.13 -2.12 16 20 C 0.02 0.48 4.97 -27.89 -0.14 0.34 16 21 C -0.52 -14.66 9.11 -34.44 -0.31 -14.98 16 22 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 23 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 24 N -0.90 -27.06 13.29 55.43 0.74 -26.33 16 25 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 29 C -0.14 -1.35 10.89 -37.45 -0.41 -1.76 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.10 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.23 0.80 8.06 -52.48 -0.42 0.37 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.34 3.54 9.06 -39.29 -0.36 3.19 16 38 H 0.35 4.41 8.58 -39.29 -0.34 4.07 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.06 1.30 7.75 -51.93 -0.40 0.90 16 43 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 404.26 15.07 6.09 6.09 Total: -1.00 -34.66 404.26 -6.64 -41.30 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -6.93 Total: 2.56 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -0.09 Total: -6.60 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.69 Total: -36.36 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -1.39 Total: -23.74 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.66 -6.64 -41.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578886362.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.437 kcal (2) G-P(sol) polarization free energy of solvation -34.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds