Wall clock time and date at job start Sat Apr 11 2020 05:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34773 * 117.00082 * 2 1 4 4 O 1.21540 * 119.99870 * 359.97438 * 3 2 1 5 5 C 1.47229 * 120.00538 * 179.97438 * 3 2 1 6 6 C 1.36498 * 127.19853 * 359.95929 * 5 3 2 7 7 O 1.33629 * 108.38324 * 179.79128 * 6 5 3 8 8 C 1.34220 * 110.92159 * 0.40702 * 7 6 5 9 9 C 1.50705 * 125.42242 * 179.85133 * 8 7 6 10 10 H 1.09003 * 109.46461 * 159.69173 * 9 8 7 11 11 C 1.53001 * 109.47000 * 279.69038 * 9 8 7 12 12 O 1.45197 * 109.47191 * 39.69407 * 9 8 7 13 13 C 1.34231 * 116.99978 * 149.99639 * 12 9 8 14 14 O 1.20830 * 119.99684 * 0.02562 * 13 12 9 15 15 C 1.50697 * 120.00189 * 179.97438 * 13 12 9 16 16 H 1.08996 * 109.47188 * 40.00351 * 15 13 12 17 17 N 1.46905 * 109.47125 * 160.00129 * 15 13 12 18 18 C 1.53001 * 109.47213 * 279.99973 * 15 13 12 19 19 C 1.52995 * 109.47332 * 174.99878 * 18 15 13 20 20 C 1.52992 * 109.47559 * 180.02562 * 19 18 15 21 21 C 1.50701 * 109.47771 * 180.02562 * 20 19 18 22 22 H 1.08006 * 119.99318 * 0.02562 * 21 20 19 23 23 C 1.37872 * 120.00394 * 179.97438 * 21 20 19 24 24 N 1.31516 * 119.99893 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99983 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47054 * 90.00273 * 25 23 21 27 27 H 1.48500 * 109.47063 * 210.00105 * 25 23 21 28 28 H 1.48493 * 109.47176 * 329.99873 * 25 23 21 29 29 C 1.34150 * 109.14541 * 359.58747 * 8 7 6 30 30 H 1.08998 * 109.47966 * 300.00166 * 1 2 3 31 31 H 1.09003 * 109.46802 * 60.00627 * 1 2 3 32 32 H 1.09004 * 109.47151 * 179.97438 * 1 2 3 33 33 H 1.08004 * 125.80909 * 359.97438 * 6 5 3 34 34 H 1.08991 * 109.47298 * 300.00197 * 11 9 8 35 35 H 1.09003 * 109.46713 * 60.00424 * 11 9 8 36 36 H 1.08999 * 109.46674 * 179.97438 * 11 9 8 37 37 H 1.00901 * 110.99869 * 296.04907 * 17 15 13 38 38 H 1.00896 * 110.99543 * 60.00030 * 17 15 13 39 39 H 1.08997 * 109.47039 * 295.00606 * 18 15 13 40 40 H 1.09001 * 109.46723 * 55.00082 * 18 15 13 41 41 H 1.09001 * 109.46974 * 300.00562 * 19 18 15 42 42 H 1.09004 * 109.46840 * 59.99935 * 19 18 15 43 43 H 1.09001 * 109.47157 * 300.00108 * 20 19 18 44 44 H 1.09004 * 109.47376 * 59.99922 * 20 19 18 45 45 H 0.96998 * 119.99680 * 179.97438 * 24 23 21 46 46 H 1.08001 * 127.02790 * 180.27779 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4018 2.2201 -0.0005 5 6 3.5341 1.2780 0.0006 6 6 4.4152 0.2355 0.0019 7 8 5.6557 0.7322 -0.0026 8 6 5.6347 2.0742 0.0019 9 6 6.8490 2.9668 0.0021 10 1 6.5699 3.9597 -0.3506 11 6 7.4071 3.0684 1.4230 12 8 7.8607 2.4077 -0.8766 13 6 8.6880 3.2741 -1.4823 14 8 8.5708 4.4603 -1.2844 15 6 9.7636 2.7672 -2.4081 16 1 9.3689 1.9487 -3.0099 17 7 10.2031 3.8562 -3.2908 18 6 10.9520 2.2676 -1.5841 19 6 11.9904 1.6394 -2.5157 20 6 13.1785 1.1392 -1.6917 21 6 14.2017 0.5210 -2.6093 22 1 14.0226 0.4886 -3.6740 23 6 15.3668 -0.0022 -2.0900 24 7 15.5855 0.0387 -0.7938 25 14 16.6353 -0.7678 -3.2276 26 1 17.5946 0.2748 -3.6723 27 1 17.3676 -1.8379 -2.5037 28 1 15.9521 -1.3491 -4.4110 29 6 4.3607 2.4943 0.0006 30 1 -0.3635 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 4.1541 -0.8125 0.0031 34 1 6.6476 3.4881 2.0825 35 1 7.6861 2.0754 1.7756 36 1 8.2856 3.7136 1.4229 37 1 9.4516 4.1603 -3.8916 38 1 10.5734 4.6277 -2.7563 39 1 11.4017 3.1048 -1.0505 40 1 10.6089 1.5218 -0.8670 41 1 11.5405 0.8022 -3.0493 42 1 12.3334 2.3852 -3.2329 43 1 13.6285 1.9762 -1.1578 44 1 12.8352 0.3933 -0.9748 45 1 16.4050 -0.3298 -0.4284 46 1 4.0130 3.5168 -0.0009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578886362.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:43 Heat of formation + Delta-G solvation = -193.414688 kcal Electronic energy + Delta-G solvation = -28378.691995 eV Core-core repulsion = 24041.102368 eV Total energy + Delta-G solvation = -4337.589627 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.86453 -41.86425 -41.24613 -38.42610 -37.54674 -37.15768 -35.29668 -34.52891 -33.74172 -33.16331 -30.31065 -29.70248 -28.60601 -27.27796 -25.28240 -25.08293 -24.07282 -22.37913 -21.93351 -21.52870 -21.11620 -19.32558 -18.93219 -18.43701 -18.26875 -17.72160 -17.43143 -17.36138 -17.13818 -16.97849 -16.82156 -16.45850 -15.76442 -15.58086 -14.87283 -14.77498 -14.53126 -14.36412 -14.31874 -14.23892 -14.13251 -13.84668 -13.61587 -13.22929 -13.13732 -12.96801 -12.88313 -12.58501 -12.48373 -12.41260 -12.24308 -12.03636 -11.87699 -11.87440 -11.83734 -11.37996 -11.22860 -11.10779 -11.02279 -10.49651 -10.04573 -9.86972 -8.14838 -6.24910 0.01994 0.55445 0.94747 1.42050 1.43484 1.44618 1.55123 1.55921 1.71661 1.88697 2.45419 3.18375 3.18473 3.35984 3.42938 3.58316 3.72470 3.83550 3.88254 3.93740 4.11574 4.18673 4.30160 4.32016 4.33156 4.50561 4.54068 4.59999 4.66613 4.71311 4.80079 4.92285 4.95797 5.03114 5.13762 5.18139 5.21063 5.28341 5.36824 5.63047 5.77998 5.86019 5.92203 5.96336 6.32305 6.37804 6.54200 6.59177 6.92874 7.43990 8.96908 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.017198 B = 0.001807 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.672087 B =15491.017545 C =16276.343145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.355 6.355 3 C 0.543 3.457 4 O -0.540 6.540 5 C -0.262 4.262 6 C 0.096 3.904 7 O -0.163 6.163 8 C -0.017 4.017 9 C 0.163 3.837 10 H 0.118 0.882 11 C -0.166 4.166 12 O -0.349 6.349 13 C 0.440 3.560 14 O -0.530 6.530 15 C 0.114 3.886 16 H 0.131 0.869 17 N -0.808 5.808 18 C -0.097 4.097 19 C -0.084 4.084 20 C 0.020 3.980 21 C -0.539 4.539 22 H 0.061 0.939 23 C -0.003 4.003 24 N -0.935 5.935 25 Si 0.963 3.037 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.262 1.262 29 C -0.143 4.143 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.138 0.862 33 H 0.264 0.736 34 H 0.100 0.900 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.355 0.645 38 H 0.352 0.648 39 H 0.056 0.944 40 H 0.072 0.928 41 H 0.054 0.946 42 H 0.062 0.938 43 H -0.012 1.012 44 H -0.009 1.009 45 H 0.262 0.738 46 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.200 1.314 2.358 30.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.271 6.271 3 C 0.390 3.610 4 O -0.432 6.432 5 C -0.264 4.264 6 C 0.025 3.975 7 O -0.057 6.057 8 C -0.065 4.065 9 C 0.108 3.892 10 H 0.136 0.864 11 C -0.223 4.223 12 O -0.265 6.265 13 C 0.282 3.718 14 O -0.419 6.419 15 C 0.000 4.000 16 H 0.149 0.851 17 N -0.339 5.339 18 C -0.135 4.135 19 C -0.121 4.121 20 C -0.017 4.017 21 C -0.577 4.577 22 H 0.079 0.921 23 C -0.200 4.200 24 N -0.575 5.575 25 Si 0.788 3.212 26 H -0.200 1.200 27 H -0.209 1.209 28 H -0.187 1.187 29 C -0.162 4.162 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.156 0.844 33 H 0.280 0.720 34 H 0.119 0.881 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.169 0.831 38 H 0.167 0.833 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.006 0.994 44 H 0.010 0.990 45 H 0.071 0.929 46 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -29.580 1.228 2.261 29.692 hybrid contribution -0.402 0.666 0.449 0.898 sum -29.982 1.895 2.710 30.164 Atomic orbital electron populations 1.23616 0.73899 1.06105 1.02663 1.86522 1.25486 1.31110 1.84006 1.20087 0.87638 0.81639 0.71685 1.90844 1.67236 1.37166 1.47971 1.20514 0.90572 0.94906 1.20434 1.25604 0.78881 1.00812 0.92213 1.83891 1.31065 1.21035 1.69734 1.21766 0.95075 0.80934 1.08724 1.21210 0.82036 0.94354 0.91609 0.86392 1.22246 1.02787 1.04017 0.93296 1.86718 1.42418 1.41234 1.56098 1.25982 0.81746 0.85262 0.78802 1.90633 1.70805 1.18429 1.61993 1.21490 0.89877 0.96960 0.91720 0.85099 1.59118 1.37724 1.14418 1.22666 1.21502 0.93855 1.00348 0.97772 1.21282 0.94259 0.99167 0.97409 1.19064 0.93337 0.94366 0.94928 1.21741 1.03654 1.37910 0.94405 0.92115 1.25977 1.00651 0.96791 0.96594 1.70102 1.26855 1.47454 1.13112 0.85474 0.78733 0.78114 0.78887 1.19959 1.20882 1.18654 1.22519 0.89798 0.99695 1.04146 0.91829 0.91935 0.84433 0.72023 0.88120 0.90864 0.91421 0.83059 0.83310 0.92480 0.90904 0.92692 0.91943 0.99367 0.99018 0.92940 0.81177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.57 113.37 1.20 1.46 16 2 O -0.35 -5.03 10.42 -56.84 -0.59 -5.62 16 3 C 0.54 10.50 7.95 70.19 0.56 11.05 16 4 O -0.54 -13.74 16.78 19.71 0.33 -13.41 16 5 C -0.26 -4.58 6.31 -19.01 -0.12 -4.70 16 6 C 0.10 1.23 11.94 67.41 0.80 2.04 16 7 O -0.16 -2.98 10.52 6.47 0.07 -2.91 16 8 C -0.02 -0.32 6.17 24.75 0.15 -0.16 16 9 C 0.16 3.25 3.02 29.85 0.09 3.34 16 10 H 0.12 2.26 7.14 -2.39 -0.02 2.24 16 11 C -0.17 -2.95 9.53 71.98 0.69 -2.26 16 12 O -0.35 -8.41 9.86 -49.25 -0.49 -8.89 16 13 C 0.44 11.09 7.17 71.23 0.51 11.60 16 14 O -0.53 -14.71 15.47 21.95 0.34 -14.37 16 15 C 0.11 2.85 3.26 44.17 0.14 3.00 16 16 H 0.13 2.93 8.14 -2.39 -0.02 2.91 16 17 N -0.81 -19.01 8.44 -171.80 -1.45 -20.46 16 18 C -0.10 -3.07 4.84 30.59 0.15 -2.92 16 19 C -0.08 -3.31 5.04 30.59 0.15 -3.15 16 20 C 0.02 1.05 4.97 29.85 0.15 1.20 16 21 C -0.54 -30.78 9.11 25.60 0.23 -30.55 16 22 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 23 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 24 N -0.93 -57.21 13.29 21.45 0.28 -56.93 16 25 Si 0.96 44.46 29.54 68.60 2.03 46.49 16 26 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 27 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 28 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 29 C -0.14 -2.61 10.89 23.65 0.26 -2.36 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.14 0.26 8.14 -2.38 -0.02 0.24 16 33 H 0.26 0.95 8.06 -2.91 -0.02 0.93 16 34 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.35 6.77 9.06 -89.69 -0.81 5.96 16 38 H 0.35 8.48 8.58 -89.70 -0.77 7.71 16 39 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.07 2.29 8.14 -2.39 -0.02 2.28 16 41 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.06 2.49 7.75 -2.38 -0.02 2.47 16 43 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 44 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 45 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 46 H 0.17 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -75.12 404.26 5.38 -69.74 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -0.57 Total: 18.46 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: 5.43 Total: -12.11 kcal Atomic # 7 Polarization: -76.22 SS G_CDS: -1.17 Total: -77.39 kcal Atomic # 8 Polarization: -44.85 SS G_CDS: -0.34 Total: -45.19 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -75.12 5.38 -69.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578886362.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.675 kcal (2) G-P(sol) polarization free energy of solvation -75.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds