Wall clock time and date at job start Sat Apr 11 2020 05:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47335 * 319.35568 * 3 2 1 5 5 C 1.37103 * 119.99920 * 263.59170 * 4 3 2 6 6 H 1.07996 * 119.99857 * 198.03274 * 5 4 3 7 7 C 1.38946 * 119.99803 * 18.02426 * 5 4 3 8 8 N 1.31417 * 120.00214 * 19.77250 * 7 5 4 9 9 Si 1.86801 * 120.00085 * 199.77414 * 7 5 4 10 10 H 1.48504 * 109.46985 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47122 * 120.00121 * 9 7 5 12 12 H 1.48496 * 109.47215 * 240.00058 * 9 7 5 13 13 C 1.34778 * 120.00594 * 83.58668 * 4 3 2 14 14 O 1.21284 * 120.00460 * 183.52455 * 13 4 3 15 15 C 1.50700 * 119.99505 * 3.52139 * 13 4 3 16 16 H 1.09002 * 109.47531 * 22.93303 * 15 13 4 17 17 C 1.53001 * 109.47025 * 262.92871 * 15 13 4 18 18 C 1.53000 * 109.47121 * 142.93438 * 15 13 4 19 19 C 1.50699 * 109.47095 * 185.00364 * 18 15 13 20 20 C 1.38314 * 119.88779 * 89.99786 * 19 18 15 21 21 C 1.38023 * 120.11816 * 180.25188 * 20 19 18 22 22 C 1.39310 * 119.88255 * 359.51704 * 21 20 19 23 23 C 1.48459 * 120.11537 * 180.23207 * 22 21 20 24 24 N 1.34055 * 126.67094 * 180.25450 * 23 22 21 25 25 N 1.28977 * 107.26840 * 179.97438 * 24 23 22 26 26 N 1.28734 * 108.94355 * 359.97438 * 25 24 23 27 27 H 0.97008 * 125.33979 * 179.97438 * 26 25 24 28 28 N 1.28871 * 109.31873 * 359.72492 * 26 25 24 29 29 C 1.39294 * 119.76211 * 0.45700 * 22 21 20 30 30 C 1.38028 * 119.88379 * 359.77404 * 29 22 21 31 31 H 4.40642 * 5.51323 * 179.97438 * 4 1 2 32 32 H 1.08994 * 109.47032 * 199.34788 * 3 2 1 33 33 H 1.09005 * 109.46801 * 79.35027 * 3 2 1 34 34 H 0.96998 * 119.99746 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.47392 * 62.68693 * 17 15 13 36 36 H 1.09004 * 109.47314 * 182.67755 * 17 15 13 37 37 H 1.08994 * 109.47419 * 302.68094 * 17 15 13 38 38 H 1.08992 * 109.47534 * 64.99591 * 18 15 13 39 39 H 1.09009 * 109.46567 * 304.99768 * 18 15 13 40 40 H 1.07999 * 119.94006 * 359.97264 * 20 19 18 41 41 H 1.08001 * 120.06024 * 179.74073 * 21 20 19 42 42 H 1.08002 * 120.06099 * 179.79365 * 29 22 21 43 43 H 1.08003 * 119.94449 * 180.02562 * 30 29 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.0471 0.8996 5 6 3.4882 -0.7352 2.1871 6 1 4.1089 -1.4118 2.7557 7 6 3.0478 0.4514 2.7603 8 7 2.0100 1.0797 2.2551 9 14 3.9308 1.1536 4.2491 10 1 5.0598 0.2633 4.6206 11 1 4.4533 2.5049 3.9229 12 1 2.9817 1.2514 5.3870 13 6 3.2372 -2.3177 0.4618 14 8 3.5808 -3.1961 1.2243 15 6 2.9247 -2.6468 -0.9752 16 1 3.0359 -1.7507 -1.5858 17 6 1.4872 -3.1602 -1.0798 18 6 3.8889 -3.7257 -1.4726 19 6 3.6578 -3.9671 -2.9421 20 6 4.3603 -3.2325 -3.8801 21 6 4.1486 -3.4460 -5.2272 22 6 3.2327 -4.4105 -5.6415 23 6 3.0048 -4.6481 -7.0891 24 7 2.1569 -5.5337 -7.6313 25 7 2.2586 -5.4261 -8.9125 26 7 3.1274 -4.5169 -9.1880 27 1 3.3890 -4.2430 -10.0810 28 7 3.5913 -4.0243 -8.0912 29 6 2.5283 -5.1479 -4.6926 30 6 2.7441 -4.9230 -3.3480 31 1 -1.0498 -0.0001 0.0003 32 1 3.0089 0.9704 0.3405 33 1 3.0094 -0.1891 -1.0100 34 1 1.7024 1.9079 2.6555 35 1 0.7975 -2.3749 -0.7705 36 1 1.2765 -3.4431 -2.1112 37 1 1.3633 -4.0283 -0.4324 38 1 3.7161 -4.6497 -0.9210 39 1 4.9158 -3.3954 -1.3158 40 1 5.0726 -2.4873 -3.5578 41 1 4.6947 -2.8690 -5.9588 42 1 1.8146 -5.8945 -5.0085 43 1 2.1987 -5.4944 -2.6115 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588350265.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:51 Heat of formation + Delta-G solvation = 177.072419 kcal Electronic energy + Delta-G solvation = -28020.834558 eV Core-core repulsion = 24071.204880 eV Total energy + Delta-G solvation = -3949.629679 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.68102 -39.73546 -38.69565 -35.51266 -34.89205 -34.36593 -33.27132 -32.05183 -31.19908 -31.10467 -30.33840 -26.90287 -26.54257 -25.06223 -24.93531 -23.96812 -22.61332 -22.06919 -20.82761 -19.44258 -18.53842 -17.80396 -17.37200 -16.97437 -16.60646 -16.41400 -15.31814 -15.18799 -14.69972 -14.34127 -14.31851 -14.04411 -13.60122 -13.51601 -13.41090 -13.17122 -12.73888 -12.67292 -12.47865 -12.19015 -11.94780 -11.65849 -11.60726 -11.53986 -11.43482 -11.20025 -11.06504 -11.02582 -10.98200 -10.58734 -10.54597 -10.43382 -10.21857 -9.31381 -9.27878 -8.99992 -8.85464 -8.55979 -8.27977 -7.85227 -6.32478 -3.86263 0.56244 0.98243 1.35162 1.98659 2.19985 3.13262 3.25478 3.31748 3.48856 3.68439 3.72012 3.92898 3.98644 4.08174 4.18535 4.72636 4.85441 4.92256 5.03339 5.05442 5.16636 5.22121 5.31577 5.39534 5.44020 5.51782 5.62295 5.66928 5.83554 5.91953 5.97075 6.08344 6.13876 6.23826 6.27258 6.33652 6.34692 6.40011 6.56114 6.64510 6.74760 6.79620 6.87034 7.04408 7.56190 7.90667 8.06188 8.43292 8.81495 9.14523 9.36794 9.92516 10.68203 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023054 B = 0.002276 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.262154 B =12298.313690 C =12558.409311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.108 4.108 3 C 0.229 3.771 4 N -0.440 5.440 5 C -0.312 4.312 6 H 0.103 0.897 7 C 0.030 3.970 8 N -0.865 5.865 9 Si 0.920 3.080 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.283 1.283 13 C 0.457 3.543 14 O -0.583 6.583 15 C -0.097 4.097 16 H 0.081 0.919 17 C -0.142 4.142 18 C -0.069 4.069 19 C -0.042 4.042 20 C -0.122 4.122 21 C -0.076 4.076 22 C -0.038 4.038 23 C 0.228 3.772 24 N -0.270 5.270 25 N -0.052 5.052 26 N -0.230 5.230 27 H 0.474 0.526 28 N -0.298 5.298 29 C -0.073 4.073 30 C -0.117 4.117 31 H 0.198 0.802 32 H 0.111 0.889 33 H 0.063 0.937 34 H 0.267 0.733 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.133 0.867 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.008 -5.861 -20.419 21.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 C -0.110 4.110 3 C 0.106 3.894 4 N -0.158 5.158 5 C -0.439 4.439 6 H 0.121 0.879 7 C -0.174 4.174 8 N -0.503 5.503 9 Si 0.747 3.253 10 H -0.192 1.192 11 H -0.207 1.207 12 H -0.209 1.209 13 C 0.246 3.754 14 O -0.467 6.467 15 C -0.119 4.119 16 H 0.099 0.901 17 C -0.200 4.200 18 C -0.106 4.106 19 C -0.043 4.043 20 C -0.140 4.140 21 C -0.096 4.096 22 C -0.041 4.041 23 C -0.051 4.051 24 N -0.143 5.143 25 N -0.048 5.048 26 N -0.076 5.076 27 H 0.328 0.672 28 N -0.149 5.149 29 C -0.093 4.093 30 C -0.135 4.135 31 H 0.215 0.785 32 H 0.128 0.872 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.151 0.849 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.821 -6.397 -20.502 21.554 hybrid contribution 0.250 1.081 0.494 1.214 sum 2.071 -5.316 -20.008 20.806 Atomic orbital electron populations 1.24237 0.95355 1.03408 1.05163 1.23140 0.94307 0.97470 0.96043 1.18308 0.84329 0.94948 0.91815 1.43738 1.55762 1.04934 1.11402 1.19704 1.29379 1.05076 0.89773 0.87890 1.25295 0.95247 0.97832 0.99041 1.70077 1.20594 1.17917 1.41698 0.85959 0.79603 0.78777 0.80949 1.19241 1.20654 1.20936 1.19989 0.83724 0.82602 0.89130 1.90512 1.52465 1.46044 1.57725 1.21149 0.96447 0.98562 0.95720 0.90111 1.21809 0.94892 1.01934 1.01361 1.20549 0.99909 1.00437 0.89743 1.20259 0.93958 0.93816 0.96277 1.21045 1.00701 1.00290 0.91921 1.21098 0.96211 0.95986 0.96289 1.17182 1.01550 1.00876 0.84488 1.23795 0.93350 0.92444 0.95511 1.76089 1.19856 1.20320 0.98084 1.78898 1.07975 1.07545 1.10338 1.47722 1.25926 1.23758 1.10205 0.67159 1.74941 1.23917 1.23574 0.92501 1.21132 0.97892 0.98078 0.92208 1.21088 0.98547 0.98676 0.95228 0.78482 0.87162 0.91892 0.92230 0.91681 0.92300 0.92405 0.89648 0.90562 0.85074 0.85217 0.84885 0.84940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.33 18.54 29.55 0.55 -4.78 16 2 C -0.11 -2.35 10.20 -37.12 -0.38 -2.73 16 3 C 0.23 4.93 4.90 -6.83 -0.03 4.90 16 4 N -0.44 -10.78 2.60 -117.94 -0.31 -11.08 16 5 C -0.31 -8.40 9.31 -14.93 -0.14 -8.54 16 6 H 0.10 2.93 7.41 -52.49 -0.39 2.54 16 7 C 0.03 0.76 4.91 -17.47 -0.09 0.68 16 8 N -0.86 -22.36 9.42 55.50 0.52 -21.84 16 9 Si 0.92 20.22 29.60 -169.99 -5.03 15.19 16 10 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 11 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 13 C 0.46 10.59 6.52 -10.98 -0.07 10.52 16 14 O -0.58 -15.55 16.09 5.55 0.09 -15.46 16 15 C -0.10 -1.69 2.16 -91.77 -0.20 -1.89 16 16 H 0.08 1.31 5.73 -51.93 -0.30 1.02 16 17 C -0.14 -2.34 8.82 37.16 0.33 -2.02 16 18 C -0.07 -1.02 4.44 -27.88 -0.12 -1.15 16 19 C -0.04 -0.52 4.72 -104.56 -0.49 -1.02 16 20 C -0.12 -1.37 9.68 -39.63 -0.38 -1.75 16 21 C -0.08 -0.82 9.70 -39.26 -0.38 -1.20 16 22 C -0.04 -0.43 5.88 -104.89 -0.62 -1.05 16 23 C 0.23 2.64 7.94 -156.30 -1.24 1.40 16 24 N -0.27 -3.24 12.23 32.16 0.39 -2.85 16 25 N -0.05 -0.52 13.47 60.35 0.81 0.29 16 26 N -0.23 -1.66 7.90 60.35 0.48 -1.18 16 27 H 0.47 1.03 8.96 -340.36 -3.05 -2.02 16 28 N -0.30 -2.93 12.08 32.17 0.39 -2.54 16 29 C -0.07 -0.82 9.70 -39.27 -0.38 -1.20 16 30 C -0.12 -1.36 7.88 -39.63 -0.31 -1.67 16 31 H 0.20 3.29 7.80 -54.10 -0.42 2.86 16 32 H 0.11 2.52 6.39 -51.93 -0.33 2.18 16 33 H 0.06 1.13 5.94 -51.93 -0.31 0.82 16 34 H 0.27 6.62 8.31 -40.82 -0.34 6.29 16 35 H 0.06 1.17 5.95 -51.93 -0.31 0.86 16 36 H 0.06 0.81 6.08 -51.93 -0.32 0.50 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.08 1.34 7.96 -51.93 -0.41 0.93 16 39 H 0.08 1.14 8.08 -51.92 -0.42 0.72 16 40 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 41 H 0.13 1.22 7.88 -52.49 -0.41 0.80 16 42 H 0.13 1.35 7.89 -52.49 -0.41 0.94 16 43 H 0.13 1.40 8.02 -52.48 -0.42 0.98 16 LS Contribution 368.65 15.07 5.56 5.56 Total: -1.00 -33.04 368.65 -8.55 -41.59 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -7.49 Total: 3.83 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: -3.96 Total: -11.50 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 2.29 Total: -39.20 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: 0.09 Total: -15.46 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.03 Total: 15.19 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.04 -8.55 -41.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588350265.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.658 kcal (2) G-P(sol) polarization free energy of solvation -33.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 185.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 177.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds