Wall clock time and date at job start Sat Apr 11 2020 05:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47292 * 2 1 4 4 C 1.50701 * 109.47147 * 240.00221 * 2 1 3 5 5 N 1.30523 * 126.34608 * 285.02559 * 4 2 1 6 6 N 1.28599 * 109.67279 * 179.97438 * 5 4 2 7 7 C 1.30517 * 109.67240 * 359.97438 * 6 5 4 8 8 N 1.35490 * 107.30899 * 359.77265 * 7 6 5 9 9 C 1.46498 * 126.98184 * 180.22623 * 8 7 6 10 10 N 1.46897 * 109.47292 * 120.00609 * 2 1 3 11 11 C 1.48568 * 110.99594 * 296.95430 * 10 2 1 12 12 C 1.54381 * 104.59248 * 200.96142 * 11 10 2 13 13 C 1.54253 * 105.06280 * 23.85451 * 12 11 10 14 14 H 1.09004 * 110.32343 * 241.10302 * 13 12 11 15 15 N 1.46496 * 110.32376 * 118.89724 * 13 12 11 16 16 C 1.34773 * 120.00454 * 86.45559 * 15 13 12 17 17 O 1.21287 * 119.99849 * 359.97438 * 16 15 13 18 18 C 1.50702 * 120.00291 * 179.97438 * 16 15 13 19 19 S 1.81002 * 109.46839 * 179.97438 * 18 16 15 20 20 C 1.76205 * 99.99515 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00468 * 359.97438 * 20 19 18 22 22 C 1.38801 * 119.99603 * 180.02562 * 20 19 18 23 23 N 1.31635 * 120.00348 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99679 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47064 * 59.99894 * 24 22 20 26 26 H 1.48501 * 109.46853 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47134 * 299.99635 * 24 22 20 28 28 C 1.48565 * 111.00219 * 181.54102 * 10 2 1 29 29 H 1.09001 * 109.47543 * 65.89833 * 1 2 3 30 30 H 1.09006 * 109.47284 * 185.89515 * 1 2 3 31 31 H 1.09003 * 109.47439 * 305.89826 * 1 2 3 32 32 H 1.07997 * 126.34465 * 180.02562 * 7 6 5 33 33 H 1.09010 * 109.47173 * 270.15428 * 9 8 7 34 34 H 1.08996 * 109.47326 * 30.15537 * 9 8 7 35 35 H 1.09000 * 109.47512 * 150.15774 * 9 8 7 36 36 H 1.09002 * 110.40974 * 82.18585 * 11 10 2 37 37 H 1.08996 * 110.51183 * 319.79042 * 11 10 2 38 38 H 1.08998 * 110.31936 * 264.95372 * 12 11 10 39 39 H 1.08997 * 110.32265 * 142.75193 * 12 11 10 40 40 H 0.97011 * 119.99726 * 266.45035 * 15 13 12 41 41 H 1.09000 * 109.46970 * 299.99654 * 18 16 15 42 42 H 1.09000 * 109.46753 * 59.99808 * 18 16 15 43 43 H 0.97000 * 119.99794 * 180.02562 * 23 22 20 44 44 H 1.09002 * 110.41180 * 40.25589 * 28 10 2 45 45 H 1.09000 * 110.40391 * 277.81611 * 28 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 2.0332 -1.9998 -1.4332 6 7 2.5335 -2.2559 -2.5898 7 6 2.8740 -1.1415 -3.1778 8 7 2.5607 -0.1286 -2.3342 9 6 2.7568 1.3045 -2.5667 10 7 2.0196 -0.6926 1.1993 11 6 1.6043 0.0223 2.4337 12 6 2.5926 -0.4636 3.5157 13 6 3.8424 -0.9257 2.7386 14 1 4.0274 -1.9853 2.9148 15 7 5.0090 -0.1320 3.1328 16 6 5.7434 -0.4985 4.2018 17 8 5.4384 -1.4852 4.8376 18 6 6.9438 0.3177 4.6069 19 16 7.7129 -0.4248 6.0676 20 6 9.0487 0.6977 6.3137 21 1 9.1797 1.5361 5.6456 22 6 9.9331 0.5039 7.3658 23 7 9.7737 -0.5182 8.1798 24 14 11.3488 1.6943 7.6272 25 1 10.8115 3.0595 7.8570 26 1 12.1411 1.2692 8.8090 27 1 12.2187 1.7007 6.4237 28 6 3.5043 -0.6802 1.2525 29 1 -0.3634 0.4196 -0.9381 30 1 -0.3634 -1.0223 0.1056 31 1 -0.3634 0.6026 0.8325 32 1 3.3189 -1.0445 -4.1570 33 1 3.7427 1.5994 -2.2070 34 1 2.6820 1.5131 -3.6339 35 1 1.9918 1.8674 -2.0320 36 1 0.5830 -0.2467 2.7034 37 1 1.6894 1.1003 2.2977 38 1 2.1640 -1.2963 4.0733 39 1 2.8471 0.3538 4.1904 40 1 5.2528 0.6574 2.6244 41 1 7.6627 0.3378 3.7879 42 1 6.6295 1.3351 4.8397 43 1 10.3916 -0.6534 8.9152 44 1 3.8882 0.2877 0.9301 45 1 3.9134 -1.4780 0.6326 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660961337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:41 Heat of formation + Delta-G solvation = 59.714158 kcal Electronic energy + Delta-G solvation = -26687.730407 eV Core-core repulsion = 22868.455644 eV Total energy + Delta-G solvation = -3819.274763 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.48357 -40.04384 -38.55033 -35.64049 -35.04932 -32.95870 -32.43694 -30.36130 -29.65853 -29.38918 -28.15451 -27.28875 -25.47571 -24.42982 -22.79517 -22.02110 -21.22106 -20.50843 -19.91508 -17.87447 -17.68449 -17.00664 -16.61305 -16.46722 -16.19414 -15.49522 -15.32138 -14.82354 -14.80319 -14.56066 -14.34132 -13.92607 -13.80149 -13.65146 -13.36694 -13.15836 -12.89467 -12.63306 -12.45234 -12.14787 -12.06191 -11.95261 -11.70000 -11.61446 -11.51694 -11.05843 -11.05207 -10.90300 -10.77961 -10.62550 -10.59991 -9.83628 -9.55838 -9.42127 -9.07557 -8.95110 -8.89745 -8.24922 -6.50963 -6.22373 -3.93196 1.39645 1.98257 2.60268 2.95237 3.07010 3.22108 3.24330 3.27895 3.45479 3.68049 3.80650 4.01747 4.19258 4.20138 4.24795 4.37504 4.41238 4.48292 4.70103 4.75873 4.87446 4.89774 5.03531 5.10242 5.12493 5.14215 5.18111 5.26272 5.35258 5.43097 5.60395 5.61558 5.69891 5.73973 5.79085 5.85904 5.99884 6.03402 6.10832 6.28778 6.39901 6.53468 6.70021 7.57839 7.66716 8.33753 8.46068 8.59821 9.22552 10.84949 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.019759 B = 0.002064 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.704119 B =13564.537906 C =14122.291697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.164 3.836 3 H 0.057 0.943 4 C 0.177 3.823 5 N -0.261 5.261 6 N -0.297 5.297 7 C 0.147 3.853 8 N -0.479 5.479 9 C 0.070 3.930 10 N -0.486 5.486 11 C 0.035 3.965 12 C -0.134 4.134 13 C 0.146 3.854 14 H 0.102 0.898 15 N -0.735 5.735 16 C 0.533 3.467 17 O -0.512 6.512 18 C -0.153 4.153 19 S -0.058 6.058 20 C -0.537 4.537 21 H 0.071 0.929 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 C 0.033 3.967 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.218 0.782 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.045 0.955 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.395 0.605 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.269 0.731 44 H 0.044 0.956 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.678 8.953 -23.610 31.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.053 3.947 3 H 0.075 0.925 4 C -0.091 4.091 5 N -0.100 5.100 6 N -0.137 5.137 7 C -0.140 4.140 8 N -0.171 5.171 9 C -0.074 4.074 10 N -0.211 5.211 11 C -0.093 4.093 12 C -0.173 4.173 13 C 0.040 3.960 14 H 0.120 0.880 15 N -0.389 5.389 16 C 0.319 3.681 17 O -0.385 6.385 18 C -0.304 4.304 19 S 0.168 5.832 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.200 1.200 28 C -0.096 4.096 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.234 0.766 33 H 0.102 0.898 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.064 0.936 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.228 0.772 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.062 0.938 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -19.543 5.174 -22.191 30.019 hybrid contribution 2.077 4.673 -1.338 5.286 sum -17.466 9.847 -23.529 30.913 Atomic orbital electron populations 1.21827 0.91622 1.04406 1.02028 1.20009 0.96643 0.93153 0.84894 0.92503 1.24586 1.01999 0.91268 0.91235 1.74381 1.16233 1.10474 1.08962 1.74371 1.14119 1.22929 1.02260 1.26478 1.04431 0.83586 0.99527 1.46232 1.46692 1.09337 1.14829 1.22140 1.03931 0.76810 1.04469 1.65412 1.07684 1.47715 1.00273 1.23197 1.00589 0.96018 0.89471 1.22774 0.94810 1.02337 0.97409 1.21525 0.85085 0.97648 0.91715 0.88024 1.46138 1.29892 1.30812 1.32084 1.20315 0.83304 0.85145 0.79363 1.90716 1.69624 1.26246 1.51938 1.23534 0.97787 1.02831 1.06247 1.85428 1.32158 1.37561 1.28015 1.22820 1.14179 1.14135 1.17376 0.91036 1.24995 0.97765 0.95942 0.94881 1.70008 1.36826 1.27699 1.15675 0.86226 0.80938 0.80469 0.77868 1.19968 1.20782 1.19961 1.23323 0.88438 1.00941 0.96890 0.92213 0.90109 0.91164 0.76565 0.89807 0.88670 0.89171 0.89277 0.93627 0.89825 0.90308 0.77157 0.89321 0.89320 0.92097 0.93768 0.89271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 8.97 37.15 0.33 -0.54 16 2 C 0.16 1.22 2.14 -68.87 -0.15 1.07 16 3 H 0.06 0.31 7.08 -51.93 -0.37 -0.06 16 4 C 0.18 1.66 5.89 -154.98 -0.91 0.74 16 5 N -0.26 -3.42 12.21 32.80 0.40 -3.02 16 6 N -0.30 -3.70 12.21 29.69 0.36 -3.34 16 7 C 0.15 1.14 12.74 -89.95 -1.15 -0.01 16 8 N -0.48 -3.17 3.15 -122.69 -0.39 -3.56 16 9 C 0.07 0.13 10.84 59.85 0.65 0.78 16 10 N -0.49 -4.54 5.19 -223.40 -1.16 -5.70 16 11 C 0.03 0.28 5.49 -2.18 -0.01 0.27 16 12 C -0.13 -1.45 6.78 -25.35 -0.17 -1.62 16 13 C 0.15 1.79 3.36 -66.55 -0.22 1.56 16 14 H 0.10 1.53 7.65 -51.93 -0.40 1.13 16 15 N -0.73 -9.60 5.04 -52.47 -0.26 -9.86 16 16 C 0.53 9.80 7.84 -10.99 -0.09 9.71 16 17 O -0.51 -11.57 15.56 5.55 0.09 -11.48 16 18 C -0.15 -3.05 6.16 36.01 0.22 -2.83 16 19 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 20 C -0.54 -15.23 9.50 30.94 0.29 -14.94 16 21 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.15 13.22 55.49 0.73 -25.41 16 24 Si 0.92 21.31 29.55 -169.99 -5.02 16.28 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 28 C 0.03 0.33 5.46 -2.18 -0.01 0.32 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.33 7.33 -51.93 -0.38 -0.05 16 32 H 0.22 0.71 8.06 -52.49 -0.42 0.28 16 33 H 0.08 0.11 8.14 -51.92 -0.42 -0.31 16 34 H 0.09 -0.02 8.14 -51.93 -0.42 -0.44 16 35 H 0.09 0.08 7.47 -51.93 -0.39 -0.31 16 36 H 0.09 0.64 7.83 -51.93 -0.41 0.24 16 37 H 0.05 0.30 7.93 -51.93 -0.41 -0.11 16 38 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.08 0.89 7.95 -51.93 -0.41 0.48 16 40 H 0.39 3.95 8.34 -40.82 -0.34 3.61 16 41 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 42 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 43 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.04 0.37 7.54 -51.93 -0.39 -0.02 16 45 H 0.09 1.09 8.01 -51.93 -0.42 0.67 16 LS Contribution 386.98 15.07 5.83 5.83 Total: -1.00 -38.46 386.98 -9.78 -48.24 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -6.84 Total: -0.73 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -1.31 Total: -3.48 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: -0.31 Total: -50.89 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.09 Total: -11.48 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.46 -9.78 -48.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660961337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.955 kcal (2) G-P(sol) polarization free energy of solvation -38.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds