Wall clock time and date at job start Sat Apr 11 2020 05:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47292 * 2 1 4 4 C 1.50701 * 109.47147 * 240.00221 * 2 1 3 5 5 N 1.30523 * 126.34608 * 285.02559 * 4 2 1 6 6 N 1.28599 * 109.67279 * 179.97438 * 5 4 2 7 7 C 1.30517 * 109.67240 * 359.97438 * 6 5 4 8 8 N 1.35490 * 107.30899 * 359.77265 * 7 6 5 9 9 C 1.46498 * 126.98184 * 180.22623 * 8 7 6 10 10 N 1.46897 * 109.47292 * 120.00609 * 2 1 3 11 11 C 1.48568 * 110.99594 * 296.95430 * 10 2 1 12 12 C 1.54381 * 104.59248 * 200.96142 * 11 10 2 13 13 C 1.54253 * 105.06280 * 23.85451 * 12 11 10 14 14 H 1.09004 * 110.32343 * 241.10302 * 13 12 11 15 15 N 1.46496 * 110.32376 * 118.89724 * 13 12 11 16 16 C 1.34773 * 120.00454 * 86.45559 * 15 13 12 17 17 O 1.21287 * 119.99849 * 359.97438 * 16 15 13 18 18 C 1.50702 * 120.00291 * 179.97438 * 16 15 13 19 19 S 1.81002 * 109.46839 * 179.97438 * 18 16 15 20 20 C 1.76205 * 99.99515 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00468 * 359.97438 * 20 19 18 22 22 C 1.38801 * 119.99603 * 180.02562 * 20 19 18 23 23 N 1.31635 * 120.00348 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99679 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47064 * 59.99894 * 24 22 20 26 26 H 1.48501 * 109.46853 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47134 * 299.99635 * 24 22 20 28 28 C 1.48565 * 111.00219 * 181.54102 * 10 2 1 29 29 H 1.09001 * 109.47543 * 65.89833 * 1 2 3 30 30 H 1.09006 * 109.47284 * 185.89515 * 1 2 3 31 31 H 1.09003 * 109.47439 * 305.89826 * 1 2 3 32 32 H 1.07997 * 126.34465 * 180.02562 * 7 6 5 33 33 H 1.09010 * 109.47173 * 270.15428 * 9 8 7 34 34 H 1.08996 * 109.47326 * 30.15537 * 9 8 7 35 35 H 1.09000 * 109.47512 * 150.15774 * 9 8 7 36 36 H 1.09002 * 110.40974 * 82.18585 * 11 10 2 37 37 H 1.08996 * 110.51183 * 319.79042 * 11 10 2 38 38 H 1.08998 * 110.31936 * 264.95372 * 12 11 10 39 39 H 1.08997 * 110.32265 * 142.75193 * 12 11 10 40 40 H 0.97011 * 119.99726 * 266.45035 * 15 13 12 41 41 H 1.09000 * 109.46970 * 299.99654 * 18 16 15 42 42 H 1.09000 * 109.46753 * 59.99808 * 18 16 15 43 43 H 0.97000 * 119.99794 * 180.02562 * 23 22 20 44 44 H 1.09002 * 110.41180 * 40.25589 * 28 10 2 45 45 H 1.09000 * 110.40391 * 277.81611 * 28 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 2.0332 -1.9998 -1.4332 6 7 2.5335 -2.2559 -2.5898 7 6 2.8740 -1.1415 -3.1778 8 7 2.5607 -0.1286 -2.3342 9 6 2.7568 1.3045 -2.5667 10 7 2.0196 -0.6926 1.1993 11 6 1.6043 0.0223 2.4337 12 6 2.5926 -0.4636 3.5157 13 6 3.8424 -0.9257 2.7386 14 1 4.0274 -1.9853 2.9148 15 7 5.0090 -0.1320 3.1328 16 6 5.7434 -0.4985 4.2018 17 8 5.4384 -1.4852 4.8376 18 6 6.9438 0.3177 4.6069 19 16 7.7129 -0.4248 6.0676 20 6 9.0487 0.6977 6.3137 21 1 9.1797 1.5361 5.6456 22 6 9.9331 0.5039 7.3658 23 7 9.7737 -0.5182 8.1798 24 14 11.3488 1.6943 7.6272 25 1 10.8115 3.0595 7.8570 26 1 12.1411 1.2692 8.8090 27 1 12.2187 1.7007 6.4237 28 6 3.5043 -0.6802 1.2525 29 1 -0.3634 0.4196 -0.9381 30 1 -0.3634 -1.0223 0.1056 31 1 -0.3634 0.6026 0.8325 32 1 3.3189 -1.0445 -4.1570 33 1 3.7427 1.5994 -2.2070 34 1 2.6820 1.5131 -3.6339 35 1 1.9918 1.8674 -2.0320 36 1 0.5830 -0.2467 2.7034 37 1 1.6894 1.1003 2.2977 38 1 2.1640 -1.2963 4.0733 39 1 2.8471 0.3538 4.1904 40 1 5.2528 0.6574 2.6244 41 1 7.6627 0.3378 3.7879 42 1 6.6295 1.3351 4.8397 43 1 10.3916 -0.6534 8.9152 44 1 3.8882 0.2877 0.9301 45 1 3.9134 -1.4780 0.6326 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660961337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:41 Heat of formation + Delta-G solvation = 30.991867 kcal Electronic energy + Delta-G solvation = -26688.975899 eV Core-core repulsion = 22868.455644 eV Total energy + Delta-G solvation = -3820.520255 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.08909 -41.13411 -39.69401 -36.38003 -35.80447 -34.58436 -33.96036 -31.39675 -30.49832 -30.34922 -28.47313 -28.29501 -27.59901 -25.03645 -23.40411 -22.74675 -22.41165 -21.36647 -20.80922 -19.84707 -18.19516 -17.96740 -17.69382 -17.29050 -17.09489 -16.87805 -16.40964 -16.22093 -15.93931 -15.77875 -15.25400 -14.95999 -14.63748 -14.35716 -14.24617 -14.18890 -13.81029 -13.67026 -13.49663 -13.17236 -12.94567 -12.85664 -12.79380 -12.72644 -12.58854 -12.58150 -12.42856 -12.20733 -11.81038 -11.74039 -11.25879 -11.12822 -11.06500 -10.97023 -10.27635 -10.25256 -10.16514 -9.55255 -8.67184 -8.34323 -6.12873 0.85349 1.25732 1.43970 1.46258 1.55213 1.57425 1.59147 1.92457 2.16849 2.27755 2.89609 2.99653 3.15950 3.31715 3.41755 3.69797 3.74252 3.89390 3.94367 3.95677 4.02638 4.13924 4.18826 4.29757 4.33227 4.38187 4.48986 4.50318 4.54843 4.68103 4.70250 4.75115 4.86719 4.89480 4.95539 5.00345 5.12872 5.19536 5.26310 5.37964 5.41389 5.75173 5.87234 6.01248 6.19531 6.46883 7.06592 7.22964 7.81437 8.74614 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.019759 B = 0.002064 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.704119 B =13564.537906 C =14122.291697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.090 0.910 4 C 0.176 3.824 5 N -0.318 5.318 6 N -0.357 5.357 7 C 0.159 3.841 8 N -0.473 5.473 9 C 0.060 3.940 10 N -0.507 5.507 11 C 0.046 3.954 12 C -0.132 4.132 13 C 0.144 3.856 14 H 0.064 0.936 15 N -0.705 5.705 16 C 0.535 3.465 17 O -0.563 6.563 18 C -0.127 4.127 19 S -0.154 6.154 20 C -0.546 4.546 21 H 0.084 0.916 22 C 0.012 3.988 23 N -0.912 5.912 24 Si 0.999 3.001 25 H -0.260 1.260 26 H -0.280 1.280 27 H -0.262 1.262 28 C 0.049 3.951 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.090 0.910 32 H 0.257 0.743 33 H 0.094 0.906 34 H 0.119 0.881 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.415 0.585 41 H 0.109 0.891 42 H 0.113 0.887 43 H 0.271 0.729 44 H 0.072 0.928 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.804 13.282 -25.908 34.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.054 3.946 3 H 0.108 0.892 4 C -0.094 4.094 5 N -0.157 5.157 6 N -0.196 5.196 7 C -0.129 4.129 8 N -0.164 5.164 9 C -0.081 4.081 10 N -0.233 5.233 11 C -0.081 4.081 12 C -0.171 4.171 13 C 0.038 3.962 14 H 0.082 0.918 15 N -0.360 5.360 16 C 0.321 3.679 17 O -0.440 6.440 18 C -0.278 4.278 19 S 0.073 5.927 20 C -0.694 4.694 21 H 0.102 0.898 22 C -0.193 4.193 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.185 1.185 26 H -0.205 1.205 27 H -0.187 1.187 28 C -0.079 4.079 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.109 0.891 32 H 0.273 0.727 33 H 0.113 0.887 34 H 0.138 0.862 35 H 0.124 0.876 36 H 0.117 0.883 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.253 0.747 41 H 0.127 0.873 42 H 0.131 0.869 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.697 9.555 -24.550 32.894 hybrid contribution 2.023 3.341 -0.765 3.980 sum -17.674 12.896 -25.315 33.459 Atomic orbital electron populations 1.21803 0.90787 1.03259 1.03553 1.20193 0.97214 0.94056 0.83100 0.89199 1.24884 1.01471 0.90683 0.92377 1.74247 1.18374 1.13086 1.10019 1.74237 1.16586 1.25727 1.03041 1.27192 1.02472 0.82874 1.00384 1.46469 1.45410 1.10976 1.13557 1.22559 1.05060 0.73911 1.06600 1.65343 1.06884 1.49419 1.01624 1.23161 0.99996 0.97331 0.87594 1.22699 0.94662 1.01681 0.98090 1.21529 0.85137 0.95597 0.93939 0.91755 1.45804 1.29019 1.30993 1.30183 1.20107 0.83287 0.84319 0.80193 1.90710 1.70887 1.28393 1.54033 1.23357 0.98237 1.03278 1.02976 1.85655 1.33785 1.40126 1.33114 1.23168 1.14186 1.14215 1.17794 0.89778 1.26158 1.00900 0.97859 0.94382 1.70186 1.38215 1.29969 1.16457 0.84992 0.76871 0.77994 0.78064 1.18488 1.20529 1.18666 1.23055 0.89384 1.01329 0.94147 0.90976 0.92759 0.89149 0.72718 0.88748 0.86221 0.87601 0.88259 0.90754 0.91554 0.90459 0.74709 0.87291 0.86859 0.92015 0.90983 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.97 71.98 0.65 -0.71 16 2 C 0.17 1.99 2.14 44.17 0.09 2.09 16 3 H 0.09 0.51 7.08 -2.39 -0.02 0.49 16 4 C 0.18 3.03 5.89 137.98 0.81 3.84 16 5 N -0.32 -8.51 12.21 -50.15 -0.61 -9.13 16 6 N -0.36 -9.03 12.21 -60.00 -0.73 -9.76 16 7 C 0.16 2.22 12.74 180.11 2.30 4.51 16 8 N -0.47 -5.02 3.15 -542.07 -1.71 -6.72 16 9 C 0.06 -0.03 10.84 127.77 1.38 1.35 16 10 N -0.51 -8.64 5.19 -860.70 -4.46 -13.10 16 11 C 0.05 0.62 5.49 86.45 0.47 1.10 16 12 C -0.13 -2.75 6.78 31.49 0.21 -2.54 16 13 C 0.14 3.48 3.36 45.88 0.15 3.64 16 14 H 0.06 2.07 7.65 -2.38 -0.02 2.05 16 15 N -0.71 -17.41 5.04 -438.31 -2.21 -19.62 16 16 C 0.53 19.59 7.84 87.66 0.69 20.28 16 17 O -0.56 -26.45 15.56 -3.05 -0.05 -26.50 16 18 C -0.13 -4.93 6.16 71.24 0.44 -4.49 16 19 S -0.15 -8.55 20.57 -56.49 -1.16 -9.71 16 20 C -0.55 -30.94 9.50 67.95 0.65 -30.30 16 21 H 0.08 4.38 7.80 -2.91 -0.02 4.35 16 22 C 0.01 0.67 5.49 84.86 0.47 1.13 16 23 N -0.91 -56.20 13.22 21.65 0.29 -55.91 16 24 Si 1.00 43.23 29.55 68.60 2.03 45.26 16 25 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 26 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 27 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 28 C 0.05 0.93 5.46 86.45 0.47 1.40 16 29 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.09 0.53 7.33 -2.39 -0.02 0.51 16 32 H 0.26 0.95 8.06 -2.91 -0.02 0.92 16 33 H 0.09 -0.19 8.14 -2.38 -0.02 -0.20 16 34 H 0.12 -0.61 8.14 -2.39 -0.02 -0.63 16 35 H 0.11 -0.35 7.47 -2.39 -0.02 -0.37 16 36 H 0.10 1.18 7.83 -2.39 -0.02 1.16 16 37 H 0.07 0.62 7.93 -2.39 -0.02 0.60 16 38 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.08 1.64 7.95 -2.39 -0.02 1.62 16 40 H 0.42 6.93 8.34 -92.70 -0.77 6.15 16 41 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 42 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 43 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 44 H 0.07 0.93 7.54 -2.39 -0.02 0.92 16 45 H 0.06 1.55 8.01 -2.39 -0.02 1.53 16 Total: -1.00 -90.96 386.98 0.39 -90.57 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 0.23 Total: 13.34 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: 8.79 Total: 1.29 kcal Atomic # 7 Polarization: -104.81 SS G_CDS: -9.44 Total: -114.25 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.05 Total: -26.50 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.71 kcal Total: -90.96 0.39 -90.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660961337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.559 kcal (2) G-P(sol) polarization free energy of solvation -90.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds