Wall clock time and date at job start Sat Apr 11 2020 05:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.47124 * 2 1 4 4 C 1.50699 * 109.47123 * 119.99565 * 2 1 3 5 5 N 1.30714 * 125.52383 * 300.02641 * 4 2 1 6 6 N 1.40447 * 106.78837 * 179.97438 * 5 4 2 7 7 H 0.97003 * 126.81886 * 180.02562 * 6 5 4 8 8 C 1.34428 * 106.35540 * 0.02562 * 6 5 4 9 9 C 1.50702 * 125.96139 * 180.02562 * 8 6 5 10 10 N 1.46905 * 109.47041 * 94.97160 * 9 8 6 11 11 C 1.47476 * 111.00104 * 265.97022 * 10 9 8 12 12 C 1.53513 * 87.93339 * 221.30181 * 11 10 9 13 13 N 1.46505 * 114.16567 * 272.37727 * 12 11 10 14 14 C 1.34772 * 119.99800 * 248.84090 * 13 12 11 15 15 O 1.21282 * 120.00542 * 359.97438 * 14 13 12 16 16 C 1.50709 * 119.99910 * 180.02562 * 14 13 12 17 17 S 1.80997 * 109.46961 * 179.97438 * 16 14 13 18 18 C 1.76204 * 99.99902 * 179.97438 * 17 16 14 19 19 H 1.08006 * 119.99566 * 0.02562 * 18 17 16 20 20 C 1.38795 * 120.00053 * 179.97438 * 18 17 16 21 21 N 1.31623 * 120.00297 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99971 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47258 * 89.99916 * 22 20 18 24 24 H 1.48498 * 109.47186 * 210.00259 * 22 20 18 25 25 H 1.48501 * 109.46922 * 330.00204 * 22 20 18 26 26 C 1.47480 * 110.99781 * 170.00106 * 10 9 8 27 27 N 1.30829 * 108.07758 * 359.97438 * 8 6 5 28 28 H 1.09005 * 109.47039 * 300.00840 * 1 2 3 29 29 H 1.09003 * 109.46717 * 60.00096 * 1 2 3 30 30 H 1.08998 * 109.47246 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47327 * 239.99761 * 2 1 3 32 32 H 1.08998 * 109.46808 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46793 * 299.99864 * 3 2 1 34 34 H 1.08993 * 109.47213 * 59.99691 * 3 2 1 35 35 H 1.08998 * 109.47080 * 214.97419 * 9 8 6 36 36 H 1.08998 * 109.47260 * 334.97333 * 9 8 6 37 37 H 1.09007 * 113.47511 * 336.06583 * 11 10 9 38 38 H 1.08999 * 113.47629 * 106.52780 * 11 10 9 39 39 H 1.08993 * 114.34767 * 139.68902 * 12 11 10 40 40 H 0.96999 * 119.99904 * 68.83816 * 13 12 11 41 41 H 1.08992 * 109.47070 * 299.99835 * 16 14 13 42 42 H 1.09000 * 109.46678 * 59.99718 * 16 14 13 43 43 H 0.97004 * 120.00503 * 179.97438 * 21 20 18 44 44 H 1.09002 * 113.47471 * 253.47075 * 26 10 9 45 45 H 1.09004 * 113.47936 * 23.87682 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 1.7836 -0.3593 2.4648 6 7 2.4393 -1.2872 3.2904 7 1 2.4467 -1.2989 4.2604 8 6 3.0546 -2.1559 2.4695 9 6 3.8888 -3.3366 2.8949 10 7 3.0529 -4.5444 2.9165 11 6 2.5071 -4.7854 4.2652 12 6 2.8017 -6.2776 4.0573 13 7 1.7195 -7.0171 3.4029 14 6 1.0136 -7.9323 4.0961 15 8 1.2745 -8.1441 5.2614 16 6 -0.0993 -8.6935 3.4228 17 16 -0.8488 -9.8393 4.6067 18 6 -2.0811 -10.5737 3.5835 19 1 -2.1805 -10.2665 2.5528 20 6 -2.9233 -11.5476 4.1018 21 7 -2.8019 -11.9223 5.3577 22 14 -4.2293 -12.3267 3.0169 23 1 -3.6647 -13.5249 2.3454 24 1 -5.3908 -12.7276 3.8507 25 1 -4.6704 -11.3468 1.9920 26 6 3.8770 -5.7544 3.0948 27 7 2.8018 -1.7980 1.2367 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 4.7089 -3.4748 2.1903 36 1 4.2924 -3.1562 3.8912 37 1 3.0992 -4.3326 5.0605 38 1 1.4439 -4.5603 4.3499 39 1 3.1984 -6.7841 4.9370 40 1 1.5110 -6.8480 2.4708 41 1 -0.8546 -7.9933 3.0663 42 1 0.3029 -9.2547 2.5793 43 1 -3.3907 -12.6027 5.7201 44 1 3.9749 -6.3506 2.1875 45 1 4.8352 -5.5601 3.5768 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665099474.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:49 Heat of formation + Delta-G solvation = 50.793085 kcal Electronic energy + Delta-G solvation = -25797.817385 eV Core-core repulsion = 21978.155774 eV Total energy + Delta-G solvation = -3819.661610 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.23765 -41.63013 -39.90798 -36.76753 -35.13647 -34.58839 -33.31286 -32.89142 -31.03690 -29.48376 -28.07589 -27.67012 -27.00404 -25.70806 -24.68306 -22.18047 -21.97022 -20.81245 -20.60102 -19.83697 -19.05909 -18.02845 -17.36488 -17.11711 -16.88242 -16.48742 -16.41642 -16.12678 -15.91366 -15.82700 -15.55297 -15.06872 -14.69708 -14.47995 -14.05415 -13.97985 -13.93071 -13.48237 -13.30028 -13.17042 -13.08435 -12.90165 -12.73208 -12.64210 -12.40615 -12.37583 -12.20423 -11.93711 -11.89902 -11.72072 -11.14746 -11.09490 -11.06193 -10.99285 -10.57163 -10.29102 -10.11878 -9.95812 -8.66688 -8.35315 -6.12990 0.51953 1.26140 1.41918 1.46019 1.56596 1.57230 1.63329 1.79955 2.22397 2.27775 2.81930 2.98749 3.03450 3.31145 3.43354 3.53787 3.70213 3.78077 3.94995 3.97519 4.17324 4.18368 4.27470 4.29212 4.40466 4.44953 4.50573 4.50849 4.63743 4.76646 4.79963 4.83191 4.87654 4.91854 5.01621 5.13890 5.24284 5.28576 5.29951 5.41535 5.46811 5.51160 5.83309 6.11769 6.19351 6.49473 7.06190 7.07681 7.22572 8.73771 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013918 B = 0.001981 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.288735 B =14134.223849 C =15613.373624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.005 4.005 3 C -0.135 4.135 4 C 0.222 3.778 5 N -0.336 5.336 6 N -0.476 5.476 7 H 0.450 0.550 8 C 0.300 3.700 9 C 0.096 3.904 10 N -0.479 5.479 11 C -0.017 4.017 12 C 0.106 3.894 13 N -0.691 5.691 14 C 0.540 3.460 15 O -0.562 6.562 16 C -0.131 4.131 17 S -0.146 6.146 18 C -0.548 4.548 19 H 0.081 0.919 20 C 0.014 3.986 21 N -0.910 5.910 22 Si 0.998 3.002 23 H -0.267 1.267 24 H -0.277 1.277 25 H -0.260 1.260 26 C 0.013 3.987 27 N -0.556 5.556 28 H 0.052 0.948 29 H 0.089 0.911 30 H 0.043 0.957 31 H 0.100 0.900 32 H 0.051 0.949 33 H 0.088 0.912 34 H 0.053 0.947 35 H 0.126 0.874 36 H 0.106 0.894 37 H 0.112 0.888 38 H 0.066 0.934 39 H 0.104 0.896 40 H 0.416 0.584 41 H 0.104 0.896 42 H 0.110 0.890 43 H 0.271 0.729 44 H 0.101 0.899 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.641 25.091 -10.022 31.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.026 4.026 3 C -0.193 4.193 4 C -0.061 4.061 5 N -0.165 5.165 6 N -0.195 5.195 7 H 0.298 0.702 8 C 0.020 3.980 9 C -0.034 4.034 10 N -0.202 5.202 11 C -0.147 4.147 12 C 0.000 4.000 13 N -0.343 5.343 14 C 0.326 3.674 15 O -0.440 6.440 16 C -0.283 4.283 17 S 0.081 5.919 18 C -0.696 4.696 19 H 0.099 0.901 20 C -0.191 4.191 21 N -0.546 5.546 22 Si 0.819 3.181 23 H -0.192 1.192 24 H -0.202 1.202 25 H -0.184 1.184 26 C -0.116 4.116 27 N -0.286 5.286 28 H 0.071 0.929 29 H 0.108 0.892 30 H 0.062 0.938 31 H 0.119 0.881 32 H 0.071 0.929 33 H 0.107 0.893 34 H 0.072 0.928 35 H 0.144 0.856 36 H 0.124 0.876 37 H 0.130 0.870 38 H 0.085 0.915 39 H 0.122 0.878 40 H 0.253 0.747 41 H 0.122 0.878 42 H 0.128 0.872 43 H 0.080 0.920 44 H 0.119 0.881 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 16.283 25.214 -8.686 31.246 hybrid contribution -0.779 -0.450 -0.477 1.018 sum 15.503 24.764 -9.164 30.620 Atomic orbital electron populations 1.21787 0.92794 1.01750 1.03287 1.19690 0.96472 0.95854 0.90615 1.21768 1.00866 0.93357 1.03290 1.24736 0.94694 0.92355 0.94297 1.77881 1.20925 1.15033 1.02711 1.47974 1.39014 1.21526 1.10972 0.70212 1.24538 0.94296 0.93367 0.85757 1.21383 0.93293 0.84698 1.04059 1.68937 1.23428 1.01314 1.26550 1.24616 1.02314 0.95917 0.91885 1.22035 0.88596 0.91692 0.97699 1.45340 1.34535 1.39057 1.15411 1.19988 0.82071 0.79185 0.86184 1.90684 1.68511 1.66697 1.18079 1.23376 0.99547 1.01813 1.03533 1.85489 1.41564 1.46480 1.18342 1.23205 1.20176 1.26531 0.99641 0.90083 1.26110 0.99786 0.96303 0.96919 1.70171 1.39060 1.30306 1.15098 0.84968 0.76799 0.78519 0.77791 1.19192 1.20245 1.18395 1.24282 0.96460 0.90479 1.00370 1.70358 1.21093 1.15340 1.21800 0.92852 0.89176 0.93798 0.88143 0.92944 0.89305 0.92794 0.85631 0.87570 0.87010 0.91507 0.87786 0.74727 0.87783 0.87207 0.91966 0.88096 0.86104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.18 71.98 0.66 -1.42 16 2 C -0.01 -0.09 3.39 -11.54 -0.04 -0.13 16 3 C -0.13 -1.70 9.18 71.98 0.66 -1.04 16 4 C 0.22 4.88 6.65 138.63 0.92 5.80 16 5 N -0.34 -7.47 12.80 -51.34 -0.66 -8.13 16 6 N -0.48 -7.94 7.45 -50.71 -0.38 -8.32 16 7 H 0.45 4.59 8.96 -213.09 -1.91 2.68 16 8 C 0.30 5.15 7.82 138.23 1.08 6.23 16 9 C 0.10 0.92 5.44 85.56 0.47 1.39 16 10 N -0.48 -6.35 6.32 -932.60 -5.89 -12.24 16 11 C -0.02 -0.25 7.52 83.57 0.63 0.38 16 12 C 0.11 1.94 4.60 45.44 0.21 2.14 16 13 N -0.69 -16.77 5.39 -441.69 -2.38 -19.15 16 14 C 0.54 19.29 7.85 87.66 0.69 19.98 16 15 O -0.56 -24.87 15.45 -3.04 -0.05 -24.92 16 16 C -0.13 -5.22 6.16 71.24 0.44 -4.78 16 17 S -0.15 -8.07 20.57 -56.49 -1.16 -9.24 16 18 C -0.55 -31.43 9.50 67.95 0.65 -30.78 16 19 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 20 C 0.01 0.78 5.49 84.86 0.47 1.25 16 21 N -0.91 -55.85 13.22 21.65 0.29 -55.56 16 22 Si 1.00 43.82 29.55 68.60 2.03 45.85 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 24 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 26 C 0.01 0.13 7.45 83.57 0.62 0.75 16 27 N -0.56 -12.66 11.19 -179.73 -2.01 -14.67 16 28 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 29 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.13 0.96 8.08 -2.39 -0.02 0.94 16 36 H 0.11 0.30 7.30 -2.39 -0.02 0.28 16 37 H 0.11 0.91 7.42 -2.38 -0.02 0.89 16 38 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.10 2.19 7.45 -2.39 -0.02 2.18 16 40 H 0.42 8.46 8.76 -92.71 -0.81 7.65 16 41 H 0.10 3.83 8.14 -2.40 -0.02 3.81 16 42 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 43 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 44 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.12 0.48 7.91 -2.38 -0.02 0.46 16 Total: -1.00 -83.57 395.03 -4.46 -88.03 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -1.70 Total: 18.56 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: 7.45 Total: -0.22 kcal Atomic # 7 Polarization: -107.04 SS G_CDS: -11.03 Total: -118.07 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.05 Total: -24.92 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: -8.07 SS G_CDS: -1.16 Total: -9.24 kcal Total: -83.57 -4.46 -88.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665099474.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.824 kcal (2) G-P(sol) polarization free energy of solvation -83.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds