Wall clock time and date at job start Sat Apr 11 2020 05:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30834 * 125.96067 * 2 1 4 4 C 1.33235 * 109.82970 * 179.97438 * 3 2 1 5 5 C 1.50707 * 125.52640 * 179.97438 * 4 3 2 6 6 N 1.46897 * 109.47138 * 90.00025 * 5 4 3 7 7 C 1.49005 * 110.97145 * 307.44339 * 6 5 4 8 8 C 1.54937 * 103.00342 * 200.29935 * 7 6 5 9 9 C 1.54599 * 103.08133 * 37.39729 * 8 7 6 10 10 H 1.09005 * 110.30457 * 218.93981 * 9 8 7 11 11 N 1.46500 * 110.31167 * 96.86978 * 9 8 7 12 12 C 1.34770 * 119.99806 * 86.44863 * 11 9 8 13 13 O 1.21288 * 120.00407 * 0.02562 * 12 11 9 14 14 C 1.50700 * 120.00043 * 180.02562 * 12 11 9 15 15 S 1.80999 * 109.47392 * 180.02562 * 14 12 11 16 16 C 1.76201 * 100.00123 * 179.97438 * 15 14 12 17 17 H 1.07996 * 120.00030 * 0.02562 * 16 15 14 18 18 C 1.38799 * 120.00187 * 179.97438 * 16 15 14 19 19 N 1.31637 * 119.99800 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00215 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47472 * 90.00000 * 20 18 16 22 22 H 1.48499 * 109.47233 * 209.99836 * 20 18 16 23 23 H 1.48498 * 109.46921 * 329.99727 * 20 18 16 24 24 C 1.47896 * 110.99782 * 189.99676 * 6 5 4 25 25 H 1.09006 * 110.08523 * 26.40312 * 24 6 5 26 26 C 1.53002 * 109.92308 * 265.19892 * 24 6 5 27 27 N 1.30708 * 108.94879 * 0.26654 * 4 3 2 28 28 N 1.34427 * 125.96149 * 179.97438 * 2 1 3 29 29 H 0.96993 * 126.82757 * 0.02887 * 28 2 1 30 30 H 1.09003 * 109.46811 * 90.00369 * 1 2 3 31 31 H 1.08993 * 109.47054 * 209.99990 * 1 2 3 32 32 H 1.08999 * 109.47432 * 330.00485 * 1 2 3 33 33 H 1.09003 * 109.46809 * 329.99637 * 5 4 3 34 34 H 1.09002 * 109.47001 * 210.00436 * 5 4 3 35 35 H 1.09000 * 110.86440 * 81.89429 * 7 6 5 36 36 H 1.09003 * 110.68346 * 318.61724 * 7 6 5 37 37 H 1.09002 * 110.72438 * 278.94787 * 8 7 6 38 38 H 1.08997 * 110.71973 * 155.84129 * 8 7 6 39 39 H 0.96999 * 119.99991 * 266.46052 * 11 9 8 40 40 H 1.09007 * 109.46893 * 300.00308 * 14 12 11 41 41 H 1.08994 * 109.47296 * 59.99956 * 14 12 11 42 42 H 0.97000 * 120.00034 * 179.97438 * 19 18 16 43 43 H 1.09006 * 109.46427 * 302.41437 * 26 24 6 44 44 H 1.08997 * 109.46670 * 62.40711 * 26 24 6 45 45 H 1.08994 * 109.47288 * 182.41247 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 0.0006 5 6 4.7372 1.6238 0.0002 6 7 5.1210 1.9285 1.3850 7 6 3.9494 2.4109 2.1692 8 6 4.6081 3.1555 3.3576 9 6 5.8354 3.8349 2.7079 10 1 6.6916 3.7927 3.3812 11 7 5.5256 5.2256 2.3670 12 6 5.6848 6.1966 3.2880 13 8 6.0850 5.9192 4.3988 14 6 5.3657 7.6272 2.9376 15 16 5.6800 8.6845 4.3726 16 6 5.2375 10.2520 3.7006 17 1 4.8952 10.3243 2.6789 18 6 5.3280 11.3938 4.4846 19 7 5.7438 11.3055 5.7304 20 14 4.8582 13.0555 3.7723 21 1 3.4142 13.3065 4.0117 22 1 5.6607 14.1196 4.4273 23 1 5.1262 13.0617 2.3117 24 6 6.1163 3.0214 1.4309 25 1 6.0120 3.6598 0.5535 26 6 7.5295 2.4376 1.4852 27 7 3.6195 -0.6167 -0.0048 28 7 2.2964 -1.0881 0.0005 29 1 2.0094 -2.0146 0.0005 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3634 0.8900 0.5137 33 1 4.4702 2.5468 -0.5144 34 1 5.5744 1.1508 -0.5132 35 1 3.3490 1.5737 2.5249 36 1 3.3436 3.0950 1.5748 37 1 4.9202 2.4512 4.1287 38 1 3.9281 3.9008 3.7703 39 1 5.2058 5.4476 1.4786 40 1 5.9946 7.9467 2.1065 41 1 4.3171 7.7057 2.6507 42 1 5.8074 12.1035 6.2782 43 1 7.6200 1.7854 2.3539 44 1 7.7205 1.8636 0.5785 45 1 8.2546 3.2477 1.5619 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692343282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:06 Heat of formation + Delta-G solvation = 54.266411 kcal Electronic energy + Delta-G solvation = -26471.709501 eV Core-core repulsion = 22652.198506 eV Total energy + Delta-G solvation = -3819.510995 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.55764 -40.09732 -38.36446 -34.78629 -33.31871 -32.76795 -32.40982 -31.48138 -31.23809 -29.12130 -28.40625 -26.07053 -25.52578 -25.11149 -22.37425 -21.44080 -20.69109 -20.52893 -19.78490 -18.29796 -17.79212 -16.74615 -16.37141 -16.24591 -15.57768 -15.22403 -14.82329 -14.77508 -14.71911 -14.47149 -14.02101 -13.87066 -13.44469 -13.41418 -13.24229 -13.00908 -12.88943 -12.55219 -12.25960 -12.22973 -12.17499 -11.76673 -11.58159 -11.38566 -11.27256 -11.04832 -11.00797 -10.87093 -10.74039 -10.48267 -10.40723 -9.89511 -9.79572 -9.37078 -9.05306 -8.86605 -8.71932 -8.21373 -6.47813 -6.19960 -3.90235 1.17580 2.20554 2.39355 3.04182 3.11423 3.23607 3.28950 3.32879 3.47395 3.68819 3.88370 4.10524 4.22105 4.31924 4.36117 4.66359 4.77278 4.86108 4.93392 5.05782 5.14326 5.15123 5.15826 5.20365 5.24898 5.30813 5.34673 5.58876 5.63295 5.64693 5.75607 5.84208 5.86852 5.91674 5.99137 6.04502 6.07644 6.13722 6.16782 6.45979 6.60481 6.66639 6.79781 7.61309 7.70703 7.72668 8.36982 8.64480 9.25354 10.87424 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.018113 B = 0.002067 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.506495 B =13542.611072 C =14412.838208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.282 3.718 3 N -0.535 5.535 4 C 0.236 3.764 5 C 0.140 3.860 6 N -0.505 5.505 7 C 0.043 3.957 8 C -0.134 4.134 9 C 0.142 3.858 10 H 0.101 0.899 11 N -0.733 5.733 12 C 0.533 3.467 13 O -0.515 6.515 14 C -0.153 4.153 15 S -0.060 6.060 16 C -0.535 4.535 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C 0.060 3.940 25 H 0.063 0.937 26 C -0.134 4.134 27 N -0.298 5.298 28 N -0.485 5.485 29 H 0.440 0.560 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.396 0.604 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.268 0.732 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.032 -26.007 -15.156 31.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.004 3.996 3 N -0.265 5.265 4 C -0.047 4.047 5 C 0.009 3.991 6 N -0.231 5.231 7 C -0.084 4.084 8 C -0.173 4.173 9 C 0.036 3.964 10 H 0.119 0.881 11 N -0.387 5.387 12 C 0.320 3.680 13 O -0.389 6.389 14 C -0.304 4.304 15 S 0.167 5.833 16 C -0.683 4.683 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.197 1.197 24 C -0.049 4.049 25 H 0.081 0.919 26 C -0.192 4.192 27 N -0.127 5.127 28 N -0.203 5.203 29 H 0.285 0.715 30 H 0.110 0.890 31 H 0.102 0.898 32 H 0.118 0.882 33 H 0.084 0.916 34 H 0.118 0.882 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.230 0.770 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.502 -26.864 -12.922 30.511 hybrid contribution -1.752 1.457 -2.590 3.450 sum -8.254 -25.406 -15.512 30.891 Atomic orbital electron populations 1.20412 0.83581 1.05188 1.04598 1.24417 0.96658 0.82832 0.95701 1.70400 1.01349 1.29529 1.25202 1.23944 0.92917 0.90092 0.97754 1.20499 0.91609 0.95483 0.91485 1.65015 1.10091 1.38122 1.09835 1.23278 0.92239 0.98418 0.94470 1.22932 0.97328 0.99578 0.97455 1.21734 0.98634 0.80522 0.95476 0.88095 1.46169 1.70124 1.06475 1.15981 1.20299 0.76573 0.86646 0.84514 1.90706 1.43831 1.83204 1.21147 1.23536 1.04598 0.95002 1.07279 1.85394 1.87019 0.99483 1.11411 1.22868 1.51577 0.92727 1.01148 0.90953 1.24995 0.94782 0.99143 0.94711 1.70022 1.43658 1.29822 1.06782 0.86168 0.78536 0.81755 0.79041 1.20286 1.20769 1.19708 1.22659 0.93838 0.91120 0.97261 0.91898 1.21733 0.93597 1.01108 1.02743 1.78055 0.96344 1.12392 1.25903 1.48036 1.04427 1.10064 1.57794 0.71495 0.88957 0.89838 0.88180 0.91574 0.88214 0.90754 0.92515 0.90150 0.90162 0.77024 0.89260 0.89279 0.92205 0.91469 0.92393 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.24 10.51 36.01 0.38 0.14 16 2 C 0.28 2.10 8.24 -155.69 -1.28 0.82 16 3 N -0.53 -5.59 10.85 -8.16 -0.09 -5.67 16 4 C 0.24 2.54 6.49 -156.86 -1.02 1.52 16 5 C 0.14 1.31 5.67 -4.97 -0.03 1.28 16 6 N -0.50 -5.16 5.03 -223.58 -1.12 -6.29 16 7 C 0.04 0.48 5.34 -1.63 -0.01 0.47 16 8 C -0.13 -1.64 6.76 -24.87 -0.17 -1.81 16 9 C 0.14 1.76 2.93 -66.57 -0.20 1.56 16 10 H 0.10 1.43 7.19 -51.93 -0.37 1.06 16 11 N -0.73 -9.87 5.08 -52.49 -0.27 -10.13 16 12 C 0.53 9.90 7.84 -10.99 -0.09 9.82 16 13 O -0.52 -11.63 15.56 5.55 0.09 -11.54 16 14 C -0.15 -3.10 6.16 36.01 0.22 -2.87 16 15 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 16 C -0.53 -15.29 9.50 30.94 0.29 -14.99 16 17 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 18 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 19 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 20 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 C 0.06 0.59 2.86 -66.64 -0.19 0.40 16 25 H 0.06 0.56 7.03 -51.93 -0.37 0.19 16 26 C -0.13 -1.20 9.32 37.16 0.35 -0.86 16 27 N -0.30 -3.18 12.80 32.42 0.41 -2.77 16 28 N -0.48 -3.49 7.45 32.62 0.24 -3.24 16 29 H 0.44 1.53 8.96 -182.34 -1.63 -0.11 16 30 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.08 0.06 8.14 -51.93 -0.42 -0.36 16 32 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.58 7.82 -51.93 -0.41 0.17 16 34 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.89 7.91 -51.93 -0.41 0.48 16 36 H 0.06 0.65 8.02 -51.93 -0.42 0.24 16 37 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.08 1.11 8.05 -51.93 -0.42 0.69 16 39 H 0.40 4.28 8.28 -40.82 -0.34 3.94 16 40 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 41 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 42 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 389.34 15.07 5.87 5.87 Total: -1.00 -37.14 389.34 -11.34 -48.47 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -8.13 Total: 0.73 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -1.83 Total: -2.53 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: -0.09 Total: -53.63 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.14 -11.34 -48.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692343282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.738 kcal (2) G-P(sol) polarization free energy of solvation -37.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds