Wall clock time and date at job start Sat Apr 11 2020 05:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30834 * 125.96067 * 2 1 4 4 C 1.33235 * 109.82970 * 179.97438 * 3 2 1 5 5 C 1.50707 * 125.52640 * 179.97438 * 4 3 2 6 6 N 1.46897 * 109.47138 * 90.00025 * 5 4 3 7 7 C 1.49005 * 110.97145 * 307.44339 * 6 5 4 8 8 C 1.54937 * 103.00342 * 200.29935 * 7 6 5 9 9 C 1.54599 * 103.08133 * 37.39729 * 8 7 6 10 10 H 1.09005 * 110.30457 * 218.93981 * 9 8 7 11 11 N 1.46500 * 110.31167 * 96.86978 * 9 8 7 12 12 C 1.34770 * 119.99806 * 86.44863 * 11 9 8 13 13 O 1.21288 * 120.00407 * 0.02562 * 12 11 9 14 14 C 1.50700 * 120.00043 * 180.02562 * 12 11 9 15 15 S 1.80999 * 109.47392 * 180.02562 * 14 12 11 16 16 C 1.76201 * 100.00123 * 179.97438 * 15 14 12 17 17 H 1.07996 * 120.00030 * 0.02562 * 16 15 14 18 18 C 1.38799 * 120.00187 * 179.97438 * 16 15 14 19 19 N 1.31637 * 119.99800 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00215 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47472 * 90.00000 * 20 18 16 22 22 H 1.48499 * 109.47233 * 209.99836 * 20 18 16 23 23 H 1.48498 * 109.46921 * 329.99727 * 20 18 16 24 24 C 1.47896 * 110.99782 * 189.99676 * 6 5 4 25 25 H 1.09006 * 110.08523 * 26.40312 * 24 6 5 26 26 C 1.53002 * 109.92308 * 265.19892 * 24 6 5 27 27 N 1.30708 * 108.94879 * 0.26654 * 4 3 2 28 28 N 1.34427 * 125.96149 * 179.97438 * 2 1 3 29 29 H 0.96993 * 126.82757 * 0.02887 * 28 2 1 30 30 H 1.09003 * 109.46811 * 90.00369 * 1 2 3 31 31 H 1.08993 * 109.47054 * 209.99990 * 1 2 3 32 32 H 1.08999 * 109.47432 * 330.00485 * 1 2 3 33 33 H 1.09003 * 109.46809 * 329.99637 * 5 4 3 34 34 H 1.09002 * 109.47001 * 210.00436 * 5 4 3 35 35 H 1.09000 * 110.86440 * 81.89429 * 7 6 5 36 36 H 1.09003 * 110.68346 * 318.61724 * 7 6 5 37 37 H 1.09002 * 110.72438 * 278.94787 * 8 7 6 38 38 H 1.08997 * 110.71973 * 155.84129 * 8 7 6 39 39 H 0.96999 * 119.99991 * 266.46052 * 11 9 8 40 40 H 1.09007 * 109.46893 * 300.00308 * 14 12 11 41 41 H 1.08994 * 109.47296 * 59.99956 * 14 12 11 42 42 H 0.97000 * 120.00034 * 179.97438 * 19 18 16 43 43 H 1.09006 * 109.46427 * 302.41437 * 26 24 6 44 44 H 1.08997 * 109.46670 * 62.40711 * 26 24 6 45 45 H 1.08994 * 109.47288 * 182.41247 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 0.0006 5 6 4.7372 1.6238 0.0002 6 7 5.1210 1.9285 1.3850 7 6 3.9494 2.4109 2.1692 8 6 4.6081 3.1555 3.3576 9 6 5.8354 3.8349 2.7079 10 1 6.6916 3.7927 3.3812 11 7 5.5256 5.2256 2.3670 12 6 5.6848 6.1966 3.2880 13 8 6.0850 5.9192 4.3988 14 6 5.3657 7.6272 2.9376 15 16 5.6800 8.6845 4.3726 16 6 5.2375 10.2520 3.7006 17 1 4.8952 10.3243 2.6789 18 6 5.3280 11.3938 4.4846 19 7 5.7438 11.3055 5.7304 20 14 4.8582 13.0555 3.7723 21 1 3.4142 13.3065 4.0117 22 1 5.6607 14.1196 4.4273 23 1 5.1262 13.0617 2.3117 24 6 6.1163 3.0214 1.4309 25 1 6.0120 3.6598 0.5535 26 6 7.5295 2.4376 1.4852 27 7 3.6195 -0.6167 -0.0048 28 7 2.2964 -1.0881 0.0005 29 1 2.0094 -2.0146 0.0005 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3634 0.8900 0.5137 33 1 4.4702 2.5468 -0.5144 34 1 5.5744 1.1508 -0.5132 35 1 3.3490 1.5737 2.5249 36 1 3.3436 3.0950 1.5748 37 1 4.9202 2.4512 4.1287 38 1 3.9281 3.9008 3.7703 39 1 5.2058 5.4476 1.4786 40 1 5.9946 7.9467 2.1065 41 1 4.3171 7.7057 2.6507 42 1 5.8074 12.1035 6.2782 43 1 7.6200 1.7854 2.3539 44 1 7.7205 1.8636 0.5785 45 1 8.2546 3.2477 1.5619 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692343282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:05 Heat of formation + Delta-G solvation = 25.973924 kcal Electronic energy + Delta-G solvation = -26472.936355 eV Core-core repulsion = 22652.198506 eV Total energy + Delta-G solvation = -3820.737850 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.18634 -41.23457 -39.62472 -35.81295 -34.57278 -34.19757 -33.36296 -32.36674 -32.20803 -30.45626 -28.98151 -27.68376 -26.85711 -26.10747 -23.23472 -22.22224 -21.61544 -21.47766 -20.88377 -19.76822 -18.89235 -17.81351 -17.76169 -17.16328 -16.86807 -16.56999 -16.15562 -16.03741 -15.86107 -15.46848 -15.14272 -14.78680 -14.67930 -14.44877 -13.97736 -13.86624 -13.71210 -13.63707 -13.55657 -13.15334 -13.02253 -12.89236 -12.78523 -12.71390 -12.63552 -12.46033 -12.34399 -12.24797 -11.78182 -11.69301 -11.14558 -11.13190 -11.08825 -10.93226 -10.52892 -10.26075 -10.11786 -9.54012 -8.65083 -8.33493 -6.11268 0.56479 1.27543 1.43264 1.47506 1.57880 1.61618 1.69486 1.74608 2.23911 2.29391 2.87519 3.00534 3.05177 3.33663 3.42785 3.50586 3.71497 3.89571 3.97930 4.04174 4.16007 4.28260 4.32121 4.37598 4.43602 4.48459 4.52550 4.69173 4.69404 4.76786 4.82454 4.86427 4.96708 5.04140 5.05770 5.06773 5.24339 5.32966 5.38043 5.43067 5.43799 5.75230 5.90458 6.19828 6.21051 6.48647 7.07587 7.07798 7.24726 8.75632 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.018113 B = 0.002067 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.506495 B =13542.611072 C =14412.838208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.286 3.714 3 N -0.568 5.568 4 C 0.224 3.776 5 C 0.140 3.860 6 N -0.508 5.508 7 C 0.060 3.940 8 C -0.132 4.132 9 C 0.141 3.859 10 H 0.083 0.917 11 N -0.706 5.706 12 C 0.538 3.462 13 O -0.561 6.561 14 C -0.129 4.129 15 S -0.150 6.150 16 C -0.545 4.545 17 H 0.083 0.917 18 C 0.012 3.988 19 N -0.911 5.911 20 Si 0.999 3.001 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.258 1.258 24 C 0.069 3.931 25 H 0.082 0.918 26 C -0.131 4.131 27 N -0.328 5.328 28 N -0.476 5.476 29 H 0.454 0.546 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.111 0.889 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.413 0.587 40 H 0.110 0.890 41 H 0.108 0.892 42 H 0.271 0.729 43 H 0.057 0.943 44 H 0.073 0.927 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.297 -26.504 -17.970 33.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.008 3.992 3 N -0.299 5.299 4 C -0.059 4.059 5 C 0.010 3.990 6 N -0.234 5.234 7 C -0.068 4.068 8 C -0.171 4.171 9 C 0.035 3.965 10 H 0.101 0.899 11 N -0.361 5.361 12 C 0.324 3.676 13 O -0.439 6.439 14 C -0.281 4.281 15 S 0.077 5.923 16 C -0.693 4.693 17 H 0.101 0.899 18 C -0.193 4.193 19 N -0.548 5.548 20 Si 0.820 3.180 21 H -0.193 1.193 22 H -0.203 1.203 23 H -0.182 1.182 24 C -0.039 4.039 25 H 0.100 0.900 26 C -0.189 4.189 27 N -0.159 5.159 28 N -0.196 5.196 29 H 0.303 0.697 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.115 0.885 33 H 0.093 0.907 34 H 0.129 0.871 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.251 0.749 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.791 -27.420 -15.792 32.588 hybrid contribution -1.419 1.430 -1.763 2.677 sum -9.210 -25.991 -17.555 32.688 Atomic orbital electron populations 1.20624 0.80514 1.06340 1.05997 1.25170 0.98125 0.82172 0.93763 1.70394 1.01600 1.31102 1.26767 1.24141 0.93457 0.90305 0.98011 1.20569 0.91868 0.95833 0.90726 1.65010 1.09665 1.38042 1.10673 1.23048 0.92259 0.97668 0.93813 1.22856 0.97012 0.99212 0.97999 1.21822 0.97988 0.79825 0.96831 0.89901 1.45887 1.68302 1.06114 1.15748 1.20037 0.76345 0.86785 0.84479 1.90699 1.46304 1.83686 1.23220 1.23373 1.06170 0.94441 1.04073 1.85579 1.87694 1.01946 1.17074 1.23202 1.51515 0.93004 1.01605 0.89921 1.26136 0.94419 1.03711 0.94989 1.70188 1.44968 1.31123 1.08482 0.84951 0.78389 0.75880 0.78744 1.19334 1.20336 1.18170 1.22609 0.94209 0.90910 0.96218 0.90022 1.21713 0.92875 1.01123 1.03162 1.77950 0.98361 1.12636 1.26912 1.47972 1.03431 1.11000 1.57228 0.69702 0.87261 0.87152 0.88515 0.90735 0.87125 0.91732 0.92642 0.90437 0.91878 0.74938 0.87133 0.87352 0.92025 0.92368 0.90786 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.27 10.51 71.24 0.75 0.48 16 2 C 0.29 3.78 8.24 138.23 1.14 4.92 16 3 N -0.57 -11.19 10.85 -179.72 -1.95 -13.14 16 4 C 0.22 4.56 6.49 138.64 0.90 5.46 16 5 C 0.14 2.39 5.67 85.56 0.48 2.88 16 6 N -0.51 -9.68 5.03 -861.29 -4.33 -14.00 16 7 C 0.06 1.28 5.34 86.56 0.46 1.74 16 8 C -0.13 -3.23 6.76 31.80 0.22 -3.02 16 9 C 0.14 3.38 2.93 45.87 0.13 3.52 16 10 H 0.08 2.37 7.19 -2.38 -0.02 2.35 16 11 N -0.71 -18.06 5.08 -438.36 -2.23 -20.28 16 12 C 0.54 19.79 7.84 87.66 0.69 20.47 16 13 O -0.56 -26.01 15.56 -3.05 -0.05 -26.06 16 14 C -0.13 -5.11 6.16 71.24 0.44 -4.67 16 15 S -0.15 -8.36 20.57 -56.49 -1.16 -9.52 16 16 C -0.55 -31.20 9.50 67.95 0.65 -30.56 16 17 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 18 C 0.01 0.69 5.49 84.86 0.47 1.16 16 19 N -0.91 -56.21 13.22 21.65 0.29 -55.92 16 20 Si 1.00 43.71 29.55 68.60 2.03 45.74 16 21 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 22 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 23 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 24 C 0.07 1.23 2.86 45.06 0.13 1.36 16 25 H 0.08 1.18 7.03 -2.38 -0.02 1.17 16 26 C -0.13 -2.13 9.32 71.98 0.67 -1.46 16 27 N -0.33 -6.69 12.80 -51.33 -0.66 -7.35 16 28 N -0.48 -6.15 7.45 -50.70 -0.38 -6.53 16 29 H 0.45 2.39 8.96 -213.10 -1.91 0.48 16 30 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 31 H 0.11 -0.19 8.14 -2.39 -0.02 -0.21 16 32 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.07 1.14 7.82 -2.39 -0.02 1.12 16 34 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.06 1.53 7.91 -2.39 -0.02 1.51 16 36 H 0.06 1.21 8.02 -2.39 -0.02 1.19 16 37 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.06 1.77 8.05 -2.39 -0.02 1.75 16 39 H 0.41 7.83 8.28 -92.71 -0.77 7.06 16 40 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 41 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 42 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 43 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 44 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -83.11 389.34 -2.97 -86.08 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -1.66 Total: 18.72 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: 7.12 Total: 2.27 kcal Atomic # 7 Polarization: -107.97 SS G_CDS: -9.26 Total: -117.23 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.05 Total: -26.06 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.52 kcal Total: -83.11 -2.97 -86.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692343282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.051 kcal (2) G-P(sol) polarization free energy of solvation -83.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds