Wall clock time and date at job start Sat Apr 11 2020 05:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47016 * 2 1 4 4 C 1.52997 * 109.47504 * 239.99741 * 2 1 3 5 5 N 1.46899 * 109.47254 * 184.99955 * 4 2 1 6 6 C 1.46904 * 111.00029 * 179.97438 * 5 4 2 7 7 C 1.50696 * 109.46800 * 180.02562 * 6 5 4 8 8 N 1.30829 * 125.96374 * 274.71287 * 7 6 5 9 9 C 1.33249 * 109.83022 * 179.87142 * 8 7 6 10 10 C 1.50703 * 125.52554 * 180.13136 * 9 8 7 11 11 C 1.52994 * 117.49663 * 189.04079 * 10 9 8 12 12 C 1.53003 * 117.49731 * 120.38205 * 10 9 8 13 13 N 1.30710 * 108.94429 * 0.40195 * 9 8 7 14 14 N 1.34430 * 125.96251 * 95.03113 * 7 6 5 15 15 H 0.97007 * 126.81877 * 359.93752 * 14 7 6 16 16 N 1.46503 * 109.46834 * 119.99503 * 2 1 3 17 17 C 1.34773 * 120.00358 * 274.99972 * 16 2 1 18 18 O 1.21287 * 119.99899 * 0.02562 * 17 16 2 19 19 C 1.50701 * 120.00419 * 179.97438 * 17 16 2 20 20 S 1.80998 * 109.47454 * 180.02562 * 19 17 16 21 21 C 1.76196 * 100.00128 * 180.02562 * 20 19 17 22 22 H 1.07999 * 119.99852 * 359.97438 * 21 20 19 23 23 C 1.38795 * 120.00046 * 180.02562 * 21 20 19 24 24 N 1.31629 * 119.99974 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00076 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47353 * 89.99241 * 25 23 21 27 27 H 1.48503 * 109.47194 * 209.99612 * 25 23 21 28 28 H 1.48500 * 109.46803 * 329.99394 * 25 23 21 29 29 H 1.09002 * 109.47016 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47400 * 300.00401 * 1 2 3 31 31 H 1.09004 * 109.46881 * 60.00620 * 1 2 3 32 32 H 1.09002 * 109.47153 * 64.99951 * 4 2 1 33 33 H 1.09001 * 109.46832 * 305.00142 * 4 2 1 34 34 H 1.00908 * 110.99847 * 56.04959 * 5 4 2 35 35 H 1.08995 * 109.47167 * 300.00240 * 6 5 4 36 36 H 1.09003 * 109.46442 * 60.00214 * 6 5 4 37 37 H 1.08995 * 115.54948 * 334.70823 * 10 9 8 38 38 H 1.09008 * 117.49972 * 0.02562 * 11 10 9 39 39 H 1.08997 * 117.50180 * 145.02263 * 11 10 9 40 40 H 1.09000 * 117.49799 * 214.97760 * 12 10 9 41 41 H 1.08998 * 117.49738 * 359.97438 * 12 10 9 42 42 H 0.97007 * 119.99919 * 95.00541 * 16 2 1 43 43 H 1.08998 * 109.47026 * 300.00705 * 19 17 16 44 44 H 1.09006 * 109.46624 * 60.00166 * 19 17 16 45 45 H 0.97010 * 119.99969 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5041 -0.8266 -1.1903 6 6 4.0304 -1.5159 -2.3760 7 6 5.5316 -1.6054 -2.2798 8 7 6.3818 -0.6840 -2.6538 9 6 7.6272 -1.0970 -2.4216 10 6 8.8794 -0.3118 -2.7162 11 6 10.2183 -1.0386 -2.5754 12 6 9.8040 0.0105 -1.5406 13 7 7.5868 -2.2958 -1.9024 14 7 6.2312 -2.6484 -1.8004 15 1 5.8712 -3.4793 -1.4526 16 7 2.0182 -0.6905 1.1963 17 6 2.1470 -0.0182 2.3572 18 8 1.8581 1.1585 2.4117 19 6 2.6487 -0.7286 3.5879 20 16 2.7090 0.4343 4.9735 21 6 3.3122 -0.6308 6.2409 22 1 3.5215 -1.6672 6.0210 23 6 3.5174 -0.1381 7.5221 24 7 3.2618 1.1250 7.7903 25 14 4.1562 -1.2674 8.8660 26 1 5.6406 -1.2285 8.8812 27 1 3.6356 -0.8156 10.1813 28 1 3.7002 -2.6561 8.6036 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.7517 -0.1584 -2.1369 33 1 1.6054 -1.7198 -1.2950 34 1 3.7996 -1.2884 -0.3431 35 1 3.6096 -2.5200 -2.4293 36 1 3.7558 -0.9588 -3.2718 37 1 8.7919 0.4333 -3.5068 38 1 10.1935 -2.0848 -2.2701 39 1 11.0119 -0.7712 -3.2731 40 1 10.3252 0.9677 -1.5580 41 1 9.5064 -0.3449 -0.5541 42 1 2.2490 -1.6317 1.1528 43 1 1.9758 -1.5504 3.8327 44 1 3.6478 -1.1212 3.3988 45 1 3.4056 1.4695 8.6857 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699353613.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:17 Heat of formation + Delta-G solvation = 73.241373 kcal Electronic energy + Delta-G solvation = -25828.823137 eV Core-core repulsion = 22010.134958 eV Total energy + Delta-G solvation = -3818.688179 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.48349 -39.52926 -37.62990 -37.11251 -34.72678 -32.73315 -32.43770 -31.92648 -30.99459 -28.58688 -27.46023 -25.49416 -24.83756 -24.34730 -22.65552 -21.77843 -21.19432 -20.34395 -20.13880 -18.39228 -17.89660 -16.81580 -16.36935 -16.22856 -15.91778 -15.76092 -15.16111 -15.03115 -14.81383 -14.63023 -14.25610 -14.04634 -13.64132 -13.26783 -12.99818 -12.82247 -12.62806 -12.50003 -12.38900 -12.13421 -12.00364 -11.83005 -11.67617 -11.43738 -11.11326 -11.06607 -11.03430 -10.82192 -10.76911 -10.27667 -10.21273 -9.82512 -9.67093 -9.39314 -9.08205 -9.00755 -8.90281 -8.24252 -6.50462 -6.22390 -3.92897 1.18917 2.23437 2.42937 3.00608 3.09238 3.21458 3.26788 3.30317 3.37698 3.65652 3.68335 3.79576 4.16515 4.19506 4.28674 4.49753 4.58601 4.65000 4.74503 4.85697 4.99217 5.10021 5.12685 5.15711 5.21056 5.30869 5.35874 5.36522 5.50494 5.55814 5.64453 5.77463 5.84896 5.85930 5.95976 6.02450 6.07526 6.09913 6.11140 6.38502 6.62090 6.68313 6.78186 7.58245 7.65158 7.80839 8.34035 8.60852 9.22835 10.84999 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.008292 B = 0.002576 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3375.976783 B =10866.573835 C =13379.858405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.144 3.856 3 H 0.099 0.901 4 C 0.056 3.944 5 N -0.677 5.677 6 C 0.139 3.861 7 C 0.288 3.712 8 N -0.513 5.513 9 C 0.259 3.741 10 C -0.075 4.075 11 C -0.162 4.162 12 C -0.157 4.157 13 N -0.310 5.310 14 N -0.481 5.481 15 H 0.439 0.561 16 N -0.736 5.736 17 C 0.535 3.465 18 O -0.512 6.512 19 C -0.154 4.154 20 S -0.058 6.058 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.273 1.273 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.039 0.961 34 H 0.346 0.654 35 H 0.055 0.945 36 H 0.113 0.887 37 H 0.132 0.868 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.391 0.609 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.629 -9.519 -25.278 27.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.039 3.961 3 H 0.117 0.883 4 C -0.074 4.074 5 N -0.311 5.311 6 C 0.008 3.992 7 C 0.009 3.991 8 N -0.241 5.241 9 C -0.023 4.023 10 C -0.095 4.095 11 C -0.199 4.199 12 C -0.195 4.195 13 N -0.139 5.139 14 N -0.200 5.200 15 H 0.285 0.715 16 N -0.391 5.391 17 C 0.321 3.679 18 O -0.386 6.386 19 C -0.305 4.305 20 S 0.169 5.831 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.057 0.943 34 H 0.165 0.835 35 H 0.073 0.927 36 H 0.131 0.869 37 H 0.150 0.850 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.117 0.883 42 H 0.224 0.776 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.800 -6.814 -25.287 26.463 hybrid contribution 0.119 -4.096 1.278 4.293 sum 3.919 -10.910 -24.009 26.661 Atomic orbital electron populations 1.22162 0.94936 1.02012 1.03066 1.20936 0.93735 0.98551 0.82865 0.88327 1.22332 0.86146 0.99655 0.99244 1.60257 1.10593 1.56449 1.03779 1.20387 0.83324 0.98595 0.96941 1.24143 0.96495 0.84412 0.94096 1.70299 0.99144 1.29106 1.25597 1.23223 0.93208 0.90056 0.95767 1.20088 0.84721 1.01535 1.03194 1.23055 0.95677 0.98791 1.02422 1.23072 1.01260 1.00721 0.94456 1.77949 0.94052 1.16472 1.25460 1.48005 1.04661 1.17421 1.49866 0.71538 1.46057 1.69754 1.13412 1.09861 1.20254 0.76769 0.87219 0.83649 1.90709 1.47926 1.15651 1.84275 1.23534 1.03478 1.04876 0.98571 1.85420 1.86243 1.12829 0.98648 1.22855 1.51075 0.98113 0.96385 0.91028 1.24990 0.95092 0.95547 0.97954 1.70019 1.45420 1.13221 1.21558 0.86176 0.79033 0.80155 0.80175 1.20256 1.20720 1.19744 0.92689 0.91266 0.91659 0.88884 0.94304 0.83483 0.92675 0.86881 0.85036 0.87905 0.87836 0.87539 0.88329 0.77599 0.89391 0.89457 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.48 37.16 0.35 -1.22 16 2 C 0.14 1.52 2.88 -67.93 -0.20 1.32 16 3 H 0.10 1.34 7.58 -51.93 -0.39 0.95 16 4 C 0.06 0.38 5.30 -3.83 -0.02 0.36 16 5 N -0.68 -5.61 6.48 -115.06 -0.75 -6.36 16 6 C 0.14 0.90 6.31 -4.98 -0.03 0.87 16 7 C 0.29 2.80 7.75 -155.70 -1.21 1.60 16 8 N -0.51 -6.49 11.19 -8.16 -0.09 -6.58 16 9 C 0.26 3.16 7.69 -156.85 -1.21 1.96 16 10 C -0.07 -0.72 6.33 -91.77 -0.58 -1.30 16 11 C -0.16 -1.26 10.14 -26.70 -0.27 -1.53 16 12 C -0.16 -1.35 10.24 -26.69 -0.27 -1.63 16 13 N -0.31 -3.68 12.34 32.42 0.40 -3.28 16 14 N -0.48 -4.33 7.45 32.62 0.24 -4.09 16 15 H 0.44 2.41 8.96 -182.33 -1.63 0.77 16 16 N -0.74 -8.91 4.36 -53.81 -0.23 -9.15 16 17 C 0.54 9.64 7.81 -10.99 -0.09 9.55 16 18 O -0.51 -11.43 15.53 5.55 0.09 -11.34 16 19 C -0.15 -3.05 6.16 36.01 0.22 -2.83 16 20 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 21 C -0.54 -15.27 9.50 30.94 0.29 -14.98 16 22 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 24 N -0.87 -26.23 13.22 55.49 0.73 -25.49 16 25 Si 0.92 21.44 29.55 -169.99 -5.02 16.41 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 28 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 34 H 0.35 2.98 7.57 -39.29 -0.30 2.68 16 35 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 36 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.13 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.10 0.89 7.88 -51.92 -0.41 0.48 16 39 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.39 3.52 8.15 -40.82 -0.33 3.18 16 43 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 44 H 0.09 1.61 8.14 -51.91 -0.42 1.18 16 45 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 399.18 15.07 6.02 6.02 Total: -1.00 -37.78 399.18 -12.03 -49.82 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -8.11 Total: 3.63 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -3.10 Total: -5.80 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 0.31 Total: -54.94 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.34 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -37.78 -12.03 -49.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699353613.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.057 kcal (2) G-P(sol) polarization free energy of solvation -37.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds