Wall clock time and date at job start Sat Apr 11 2020 05:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47016 * 2 1 4 4 C 1.52997 * 109.47504 * 239.99741 * 2 1 3 5 5 N 1.46899 * 109.47254 * 184.99955 * 4 2 1 6 6 C 1.46904 * 111.00029 * 179.97438 * 5 4 2 7 7 C 1.50696 * 109.46800 * 180.02562 * 6 5 4 8 8 N 1.30829 * 125.96374 * 274.71287 * 7 6 5 9 9 C 1.33249 * 109.83022 * 179.87142 * 8 7 6 10 10 C 1.50703 * 125.52554 * 180.13136 * 9 8 7 11 11 C 1.52994 * 117.49663 * 189.04079 * 10 9 8 12 12 C 1.53003 * 117.49731 * 120.38205 * 10 9 8 13 13 N 1.30710 * 108.94429 * 0.40195 * 9 8 7 14 14 N 1.34430 * 125.96251 * 95.03113 * 7 6 5 15 15 H 0.97007 * 126.81877 * 359.93752 * 14 7 6 16 16 N 1.46503 * 109.46834 * 119.99503 * 2 1 3 17 17 C 1.34773 * 120.00358 * 274.99972 * 16 2 1 18 18 O 1.21287 * 119.99899 * 0.02562 * 17 16 2 19 19 C 1.50701 * 120.00419 * 179.97438 * 17 16 2 20 20 S 1.80998 * 109.47454 * 180.02562 * 19 17 16 21 21 C 1.76196 * 100.00128 * 180.02562 * 20 19 17 22 22 H 1.07999 * 119.99852 * 359.97438 * 21 20 19 23 23 C 1.38795 * 120.00046 * 180.02562 * 21 20 19 24 24 N 1.31629 * 119.99974 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00076 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47353 * 89.99241 * 25 23 21 27 27 H 1.48503 * 109.47194 * 209.99612 * 25 23 21 28 28 H 1.48500 * 109.46803 * 329.99394 * 25 23 21 29 29 H 1.09002 * 109.47016 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47400 * 300.00401 * 1 2 3 31 31 H 1.09004 * 109.46881 * 60.00620 * 1 2 3 32 32 H 1.09002 * 109.47153 * 64.99951 * 4 2 1 33 33 H 1.09001 * 109.46832 * 305.00142 * 4 2 1 34 34 H 1.00908 * 110.99847 * 56.04959 * 5 4 2 35 35 H 1.08995 * 109.47167 * 300.00240 * 6 5 4 36 36 H 1.09003 * 109.46442 * 60.00214 * 6 5 4 37 37 H 1.08995 * 115.54948 * 334.70823 * 10 9 8 38 38 H 1.09008 * 117.49972 * 0.02562 * 11 10 9 39 39 H 1.08997 * 117.50180 * 145.02263 * 11 10 9 40 40 H 1.09000 * 117.49799 * 214.97760 * 12 10 9 41 41 H 1.08998 * 117.49738 * 359.97438 * 12 10 9 42 42 H 0.97007 * 119.99919 * 95.00541 * 16 2 1 43 43 H 1.08998 * 109.47026 * 300.00705 * 19 17 16 44 44 H 1.09006 * 109.46624 * 60.00166 * 19 17 16 45 45 H 0.97010 * 119.99969 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5041 -0.8266 -1.1903 6 6 4.0304 -1.5159 -2.3760 7 6 5.5316 -1.6054 -2.2798 8 7 6.3818 -0.6840 -2.6538 9 6 7.6272 -1.0970 -2.4216 10 6 8.8794 -0.3118 -2.7162 11 6 10.2183 -1.0386 -2.5754 12 6 9.8040 0.0105 -1.5406 13 7 7.5868 -2.2958 -1.9024 14 7 6.2312 -2.6484 -1.8004 15 1 5.8712 -3.4793 -1.4526 16 7 2.0182 -0.6905 1.1963 17 6 2.1470 -0.0182 2.3572 18 8 1.8581 1.1585 2.4117 19 6 2.6487 -0.7286 3.5879 20 16 2.7090 0.4343 4.9735 21 6 3.3122 -0.6308 6.2409 22 1 3.5215 -1.6672 6.0210 23 6 3.5174 -0.1381 7.5221 24 7 3.2618 1.1250 7.7903 25 14 4.1562 -1.2674 8.8660 26 1 5.6406 -1.2285 8.8812 27 1 3.6356 -0.8156 10.1813 28 1 3.7002 -2.6561 8.6036 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.7517 -0.1584 -2.1369 33 1 1.6054 -1.7198 -1.2950 34 1 3.7996 -1.2884 -0.3431 35 1 3.6096 -2.5200 -2.4293 36 1 3.7558 -0.9588 -3.2718 37 1 8.7919 0.4333 -3.5068 38 1 10.1935 -2.0848 -2.2701 39 1 11.0119 -0.7712 -3.2731 40 1 10.3252 0.9677 -1.5580 41 1 9.5064 -0.3449 -0.5541 42 1 2.2490 -1.6317 1.1528 43 1 1.9758 -1.5504 3.8327 44 1 3.6478 -1.1212 3.3988 45 1 3.4056 1.4695 8.6857 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699353613.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:16 Heat of formation + Delta-G solvation = 44.530754 kcal Electronic energy + Delta-G solvation = -25830.068123 eV Core-core repulsion = 22010.134958 eV Total energy + Delta-G solvation = -3819.933165 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.24556 -40.80051 -38.37193 -37.93458 -35.65942 -34.59885 -33.51437 -32.98569 -31.90855 -29.99144 -28.10956 -27.67207 -25.57442 -25.01868 -23.29818 -22.72619 -21.97163 -21.52565 -20.88535 -19.89055 -19.09086 -18.04778 -17.43441 -16.97544 -16.89726 -16.80200 -16.48945 -16.38142 -16.00556 -15.67518 -15.49931 -14.92298 -14.66744 -14.59747 -14.30605 -13.90573 -13.68795 -13.27579 -13.18296 -13.16844 -12.99468 -12.90666 -12.87630 -12.67172 -12.56076 -12.43009 -12.15137 -11.93251 -11.72626 -11.48328 -11.15889 -11.09072 -11.01929 -10.90172 -10.41443 -10.28208 -10.11574 -9.47604 -8.67759 -8.35972 -6.13997 0.43888 1.26042 1.40843 1.46152 1.56168 1.59028 1.64556 1.66359 2.24927 2.30466 2.73659 2.98085 3.00035 3.15319 3.32136 3.51343 3.66200 3.82278 3.90637 4.01750 4.06092 4.15368 4.22274 4.27374 4.37388 4.47962 4.49215 4.59599 4.68219 4.74580 4.77333 4.81365 4.87345 5.07105 5.12209 5.21378 5.23110 5.30157 5.31403 5.39864 5.56143 5.83308 6.11043 6.18104 6.18707 6.51924 7.03767 7.05181 7.29278 8.73272 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.008292 B = 0.002576 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3375.976783 B =10866.573835 C =13379.858405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.142 3.858 3 H 0.062 0.938 4 C 0.068 3.932 5 N -0.701 5.701 6 C 0.144 3.856 7 C 0.291 3.709 8 N -0.552 5.552 9 C 0.243 3.757 10 C -0.092 4.092 11 C -0.145 4.145 12 C -0.159 4.159 13 N -0.335 5.335 14 N -0.471 5.471 15 H 0.454 0.546 16 N -0.707 5.707 17 C 0.536 3.464 18 O -0.564 6.564 19 C -0.129 4.129 20 S -0.153 6.153 21 C -0.546 4.546 22 H 0.082 0.918 23 C 0.012 3.988 24 N -0.911 5.911 25 Si 0.998 3.002 26 H -0.269 1.269 27 H -0.277 1.277 28 H -0.257 1.257 29 H 0.077 0.923 30 H 0.030 0.970 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.342 0.658 35 H 0.097 0.903 36 H 0.119 0.881 37 H 0.140 0.860 38 H 0.092 0.908 39 H 0.129 0.871 40 H 0.124 0.876 41 H 0.078 0.922 42 H 0.411 0.589 43 H 0.110 0.890 44 H 0.105 0.895 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.562 -12.532 -26.869 29.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.037 3.963 3 H 0.080 0.920 4 C -0.061 4.061 5 N -0.335 5.335 6 C 0.013 3.987 7 C 0.011 3.989 8 N -0.281 5.281 9 C -0.039 4.039 10 C -0.113 4.113 11 C -0.182 4.182 12 C -0.198 4.198 13 N -0.165 5.165 14 N -0.192 5.192 15 H 0.302 0.698 16 N -0.361 5.361 17 C 0.322 3.678 18 O -0.442 6.442 19 C -0.280 4.280 20 S 0.074 5.926 21 C -0.693 4.693 22 H 0.100 0.900 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.820 3.180 26 H -0.194 1.194 27 H -0.202 1.202 28 H -0.181 1.181 29 H 0.096 0.904 30 H 0.049 0.951 31 H 0.106 0.894 32 H 0.127 0.873 33 H 0.092 0.908 34 H 0.161 0.839 35 H 0.114 0.886 36 H 0.137 0.863 37 H 0.158 0.842 38 H 0.111 0.889 39 H 0.147 0.853 40 H 0.142 0.858 41 H 0.097 0.903 42 H 0.248 0.752 43 H 0.128 0.872 44 H 0.123 0.877 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.718 -9.902 -26.926 28.929 hybrid contribution 0.088 -3.189 1.637 3.586 sum 3.806 -13.091 -25.289 28.730 Atomic orbital electron populations 1.22102 0.93918 1.03220 1.02341 1.21084 0.94498 0.97205 0.83474 0.92005 1.22264 0.85404 1.01143 0.97244 1.60186 1.11513 1.57564 1.04249 1.20554 0.81039 1.00834 0.96231 1.24733 0.97645 0.83769 0.92732 1.70290 0.99816 1.30763 1.27263 1.23675 0.93960 0.90396 0.95822 1.20288 0.84784 1.02323 1.03903 1.23099 0.95198 0.97920 1.02015 1.23090 1.01363 1.01933 0.93410 1.77860 0.95749 1.16708 1.26207 1.47930 1.03797 1.18006 1.49417 0.69765 1.45766 1.67678 1.14167 1.08520 1.19989 0.76640 0.86540 0.84677 1.90699 1.50545 1.17823 1.85135 1.23370 1.05251 1.03184 0.96238 1.85619 1.86652 1.17477 1.02858 1.23189 1.50940 0.98407 0.96807 0.89982 1.26139 0.95090 0.97223 1.00795 1.70189 1.46780 1.15520 1.22298 0.84956 0.78449 0.78231 0.76358 1.19422 1.20238 1.18088 0.90404 0.95066 0.89390 0.87303 0.90812 0.83917 0.88572 0.86273 0.84203 0.88941 0.85302 0.85762 0.90338 0.75190 0.87223 0.87681 0.91993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.48 71.98 0.68 -2.05 16 2 C 0.14 2.74 2.88 44.99 0.13 2.87 16 3 H 0.06 1.70 7.58 -2.39 -0.02 1.68 16 4 C 0.07 0.68 5.30 86.30 0.46 1.14 16 5 N -0.70 -9.64 6.48 -517.93 -3.36 -13.00 16 6 C 0.14 1.40 6.31 85.55 0.54 1.94 16 7 C 0.29 5.18 7.75 138.23 1.07 6.25 16 8 N -0.55 -13.75 11.19 -179.73 -2.01 -15.76 16 9 C 0.24 5.95 7.69 138.63 1.07 7.01 16 10 C -0.09 -1.77 6.33 -11.54 -0.07 -1.85 16 11 C -0.14 -2.14 10.14 30.62 0.31 -1.83 16 12 C -0.16 -2.74 10.24 30.62 0.31 -2.43 16 13 N -0.34 -7.86 12.34 -51.33 -0.63 -8.49 16 14 N -0.47 -7.81 7.45 -50.71 -0.38 -8.19 16 15 H 0.45 4.03 8.96 -213.09 -1.91 2.12 16 16 N -0.71 -15.85 4.36 -442.53 -1.93 -17.77 16 17 C 0.54 19.28 7.81 87.66 0.68 19.96 16 18 O -0.56 -26.19 15.53 -3.05 -0.05 -26.24 16 19 C -0.13 -5.05 6.16 71.24 0.44 -4.61 16 20 S -0.15 -8.57 20.57 -56.49 -1.16 -9.74 16 21 C -0.55 -31.30 9.50 67.95 0.65 -30.65 16 22 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 23 C 0.01 0.70 5.49 84.86 0.47 1.17 16 24 N -0.91 -56.51 13.22 21.65 0.29 -56.23 16 25 Si 1.00 43.80 29.55 68.60 2.03 45.83 16 26 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 27 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 28 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 29 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.34 4.95 7.57 -89.69 -0.68 4.27 16 35 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 36 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.14 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.09 1.57 7.88 -2.38 -0.02 1.55 16 39 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.41 6.01 8.15 -92.70 -0.76 5.25 16 43 H 0.11 3.80 8.14 -2.40 -0.02 3.79 16 44 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 45 H 0.27 15.59 8.31 -92.70 -0.77 14.82 16 Total: -1.00 -88.05 399.18 -2.78 -90.83 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: -2.31 Total: 21.84 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: 6.73 Total: -3.08 kcal Atomic # 7 Polarization: -111.43 SS G_CDS: -8.02 Total: -119.45 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.05 Total: -26.24 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.74 kcal Total: -88.05 -2.78 -90.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699353613.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.360 kcal (2) G-P(sol) polarization free energy of solvation -88.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds