Wall clock time and date at job start Sat Apr 11 2020 05:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30830 * 125.96297 * 2 1 4 4 C 1.33242 * 109.82972 * 180.02562 * 3 2 1 5 5 C 1.50698 * 125.52468 * 179.97438 * 4 3 2 6 6 N 1.46905 * 109.47194 * 89.99886 * 5 4 3 7 7 C 1.46902 * 110.99800 * 180.02562 * 6 5 4 8 8 C 1.53006 * 109.46626 * 180.02562 * 7 6 5 9 9 H 1.08997 * 109.47395 * 65.00236 * 8 7 6 10 10 N 1.46493 * 109.47189 * 304.99760 * 8 7 6 11 11 C 1.34775 * 120.00149 * 155.00357 * 10 8 7 12 12 O 1.21281 * 119.99850 * 359.97438 * 11 10 8 13 13 C 1.50704 * 120.00045 * 180.02562 * 11 10 8 14 14 S 1.81000 * 109.46943 * 179.97438 * 13 11 10 15 15 C 1.76196 * 100.00079 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00217 * 359.97438 * 15 14 13 17 17 C 1.38802 * 120.00155 * 180.02562 * 15 14 13 18 18 N 1.31629 * 119.99970 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99997 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46738 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.46732 * 119.99507 * 19 17 15 22 22 H 1.48500 * 109.47020 * 239.99897 * 19 17 15 23 23 C 1.52999 * 109.46811 * 184.99853 * 8 7 6 24 24 C 1.52999 * 117.49908 * 248.74389 * 23 8 7 25 25 C 1.53004 * 117.49690 * 180.08574 * 23 8 7 26 26 N 1.30709 * 108.94871 * 0.26346 * 4 3 2 27 27 N 1.34435 * 125.96084 * 180.02562 * 2 1 3 28 28 H 0.96995 * 126.82293 * 359.97438 * 27 2 1 29 29 H 1.09007 * 109.47341 * 89.97840 * 1 2 3 30 30 H 1.09004 * 109.47400 * 209.97459 * 1 2 3 31 31 H 1.08997 * 109.47150 * 329.97888 * 1 2 3 32 32 H 1.09002 * 109.47213 * 329.99824 * 5 4 3 33 33 H 1.09001 * 109.47086 * 209.99580 * 5 4 3 34 34 H 1.00898 * 110.99743 * 303.94953 * 6 5 4 35 35 H 1.08993 * 109.47737 * 60.00169 * 7 6 5 36 36 H 1.09000 * 109.47263 * 299.99731 * 7 6 5 37 37 H 0.97003 * 120.00120 * 335.00451 * 10 8 7 38 38 H 1.08997 * 109.46521 * 299.99329 * 13 11 10 39 39 H 1.08997 * 109.47445 * 59.99951 * 13 11 10 40 40 H 0.96994 * 120.00006 * 180.02562 * 18 17 15 41 41 H 1.08996 * 115.54978 * 34.41403 * 23 8 7 42 42 H 1.09003 * 117.49885 * 0.02562 * 24 23 8 43 43 H 1.09007 * 117.50135 * 145.01957 * 24 23 8 44 44 H 1.08999 * 117.49668 * 214.97861 * 25 23 8 45 45 H 1.08996 * 117.50112 * 359.97438 * 25 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2752 1.0589 0.0000 4 6 3.5552 0.6887 -0.0006 5 6 4.7371 1.6235 -0.0013 6 7 5.1219 1.9276 1.3835 7 6 6.2733 2.8391 1.4219 8 6 6.6440 3.1312 2.8773 9 1 6.9864 2.2139 3.3563 10 7 5.4694 3.6436 3.5871 11 6 5.3752 3.5024 4.9241 12 8 6.2626 2.9505 5.5396 13 6 4.1665 4.0291 5.6541 14 16 4.3347 3.6883 7.4238 15 6 2.8305 4.3901 8.0148 16 1 2.1406 4.8500 7.3228 17 6 2.5326 4.3528 9.3700 18 7 3.3736 3.7927 10.2135 19 14 0.9374 5.0962 9.9964 20 1 0.1718 5.6588 8.8551 21 1 0.1298 4.0441 10.6642 22 1 1.2430 6.1770 10.9678 23 6 7.7611 4.1758 2.9192 24 6 9.1407 3.7162 3.3952 25 6 8.2768 4.6039 4.2946 26 7 3.6194 -0.6168 -0.0066 27 7 2.2964 -1.0881 -0.0005 28 1 2.0093 -2.0146 -0.0006 29 1 -0.3634 0.0004 -1.0277 30 1 -0.3634 -0.8902 0.5134 31 1 -0.3633 0.8898 0.5141 32 1 4.4698 2.5469 -0.5152 33 1 5.5740 1.1508 -0.5154 34 1 4.3429 2.3076 1.9000 35 1 6.0162 3.7708 0.9181 36 1 7.1209 2.3752 0.9175 37 1 4.7595 4.0847 3.0947 38 1 4.0873 5.1047 5.4968 39 1 3.2702 3.5392 5.2737 40 1 3.1653 3.7663 11.1605 41 1 7.7255 4.9338 2.1367 42 1 9.2525 2.6695 3.6782 43 1 10.0127 4.1721 2.9262 44 1 8.5808 5.6435 4.4169 45 1 7.8200 4.1417 5.1696 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699568216.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:09 Heat of formation + Delta-G solvation = 73.357543 kcal Electronic energy + Delta-G solvation = -26276.745286 eV Core-core repulsion = 22458.062144 eV Total energy + Delta-G solvation = -3818.683142 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.41964 -39.75974 -37.35203 -36.31899 -34.04288 -32.91500 -32.63691 -32.40135 -30.26564 -28.75472 -27.98539 -25.87130 -25.42082 -22.55238 -22.09055 -21.82813 -20.95599 -20.50622 -20.14994 -18.17399 -17.81418 -16.70863 -16.24821 -16.09147 -15.73961 -15.65113 -15.02109 -14.78304 -14.56060 -14.50436 -14.27936 -13.87095 -13.53373 -13.35435 -13.24020 -13.07669 -12.66107 -12.46262 -12.19800 -12.10306 -12.02550 -11.81288 -11.51887 -11.15186 -11.04625 -10.98219 -10.73907 -10.44369 -10.33664 -10.24049 -10.09033 -9.78370 -9.76041 -9.27265 -9.04965 -8.78849 -8.67219 -8.19061 -6.45753 -6.19240 -3.88792 1.28142 2.31381 2.49152 3.05219 3.14812 3.22981 3.29379 3.33926 3.56680 3.68085 4.00583 4.12195 4.22976 4.24507 4.46794 4.65671 4.89299 4.96099 4.96731 5.01710 5.13687 5.16024 5.17254 5.22695 5.26669 5.31136 5.36507 5.41609 5.54273 5.68318 5.78230 5.89733 5.93629 5.96248 6.09598 6.14451 6.19494 6.26303 6.57681 6.61622 6.72033 6.75996 7.05171 7.62559 7.77620 7.80101 8.38127 8.70475 9.26351 10.88215 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.007563 B = 0.003070 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3701.372526 B = 9117.870276 C =12279.970082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.284 3.716 3 N -0.538 5.538 4 C 0.231 3.769 5 C 0.155 3.845 6 N -0.681 5.681 7 C 0.059 3.941 8 C 0.180 3.820 9 H 0.097 0.903 10 N -0.731 5.731 11 C 0.538 3.462 12 O -0.513 6.513 13 C -0.154 4.154 14 S -0.059 6.059 15 C -0.534 4.534 16 H 0.072 0.928 17 C 0.073 3.927 18 N -0.868 5.868 19 Si 0.917 3.083 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.173 4.173 24 C -0.172 4.172 25 C -0.177 4.177 26 N -0.295 5.295 27 N -0.483 5.483 28 H 0.440 0.560 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.061 0.939 33 H 0.096 0.904 34 H 0.350 0.650 35 H 0.039 0.961 36 H 0.090 0.910 37 H 0.393 0.607 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.267 0.733 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.086 0.914 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.563 -4.676 -25.545 25.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.005 3.995 3 N -0.268 5.268 4 C -0.053 4.053 5 C 0.023 3.977 6 N -0.315 5.315 7 C -0.070 4.070 8 C 0.075 3.925 9 H 0.115 0.885 10 N -0.384 5.384 11 C 0.325 3.675 12 O -0.388 6.388 13 C -0.305 4.305 14 S 0.168 5.832 15 C -0.683 4.683 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.744 3.256 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.193 4.193 24 C -0.209 4.209 25 C -0.214 4.214 26 N -0.125 5.125 27 N -0.202 5.202 28 H 0.286 0.714 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.119 0.881 32 H 0.079 0.921 33 H 0.115 0.885 34 H 0.170 0.830 35 H 0.057 0.943 36 H 0.109 0.891 37 H 0.226 0.774 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.077 0.923 41 H 0.118 0.882 42 H 0.113 0.887 43 H 0.107 0.893 44 H 0.104 0.896 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.923 -6.236 -24.275 25.137 hybrid contribution -3.206 1.525 -0.818 3.643 sum -1.282 -4.711 -25.093 25.564 Atomic orbital electron populations 1.20418 0.83554 1.05361 1.04478 1.24396 0.96662 0.82822 0.95579 1.70352 1.01385 1.29664 1.25395 1.24029 0.92946 0.90219 0.98068 1.20077 0.91423 0.94999 0.91168 1.60316 1.10356 1.48999 1.11832 1.22216 0.94322 0.94412 0.96079 1.20464 0.84743 0.96253 0.91049 0.88472 1.46026 1.22582 1.62087 1.07695 1.20200 0.87739 0.78180 0.81400 1.90628 1.40319 1.41415 1.66437 1.23536 0.98169 1.03755 1.05001 1.85368 1.28847 1.77311 0.91663 1.22918 1.06098 1.43758 0.95484 0.90946 1.24986 0.97705 0.95180 0.95726 1.70027 1.35377 1.41629 1.03272 0.86134 0.81916 0.78779 0.78775 1.19621 1.20599 1.20589 1.22623 0.95218 1.01910 0.99559 1.22914 0.92938 1.00783 1.04310 1.23329 1.02975 0.99847 0.95244 1.78047 0.96388 1.12433 1.25590 1.48033 1.04418 1.10114 1.57589 0.71432 0.89021 0.89732 0.88132 0.92136 0.88538 0.83042 0.94278 0.89138 0.77354 0.89355 0.89399 0.92285 0.88215 0.88670 0.89274 0.89579 0.85777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.35 10.51 36.00 0.38 0.03 16 2 C 0.28 2.54 8.24 -155.69 -1.28 1.26 16 3 N -0.54 -6.28 11.19 -8.16 -0.09 -6.37 16 4 C 0.23 2.74 7.65 -156.86 -1.20 1.54 16 5 C 0.15 1.48 6.31 -4.97 -0.03 1.45 16 6 N -0.68 -7.24 6.48 -115.05 -0.75 -7.98 16 7 C 0.06 0.54 5.28 -3.82 -0.02 0.52 16 8 C 0.18 2.16 2.58 -67.93 -0.18 1.98 16 9 H 0.10 1.45 7.33 -51.93 -0.38 1.07 16 10 N -0.73 -9.73 4.34 -53.81 -0.23 -9.96 16 11 C 0.54 9.90 7.18 -10.98 -0.08 9.82 16 12 O -0.51 -11.24 12.89 5.56 0.07 -11.17 16 13 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 14 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 15 C -0.53 -15.31 9.50 30.94 0.29 -15.01 16 16 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 17 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 18 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 19 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 20 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 C -0.17 -1.98 5.36 -90.62 -0.49 -2.47 16 24 C -0.17 -1.99 10.18 -26.69 -0.27 -2.26 16 25 C -0.18 -2.49 9.74 -26.69 -0.26 -2.75 16 26 N -0.30 -3.61 12.80 32.42 0.41 -3.19 16 27 N -0.48 -4.27 7.45 32.62 0.24 -4.03 16 28 H 0.44 2.27 8.96 -182.34 -1.63 0.64 16 29 H 0.09 0.25 8.14 -51.92 -0.42 -0.17 16 30 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.35 4.01 7.57 -39.29 -0.30 3.72 16 35 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.39 4.25 8.15 -40.82 -0.33 3.92 16 38 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 39 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 40 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.10 0.98 8.11 -51.93 -0.42 0.56 16 42 H 0.09 1.16 8.05 -51.93 -0.42 0.74 16 43 H 0.09 0.87 8.14 -51.92 -0.42 0.44 16 44 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.12 2.23 5.02 -51.93 -0.26 1.97 16 LS Contribution 392.86 15.07 5.92 5.92 Total: -1.00 -37.15 392.86 -11.87 -49.02 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -7.94 Total: 7.44 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -3.01 Total: -6.80 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: 0.32 Total: -57.10 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.07 Total: -11.17 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.15 -11.87 -49.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699568216.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.378 kcal (2) G-P(sol) polarization free energy of solvation -37.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds