Wall clock time and date at job start Sat Apr 11 2020 05:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30830 * 125.96297 * 2 1 4 4 C 1.33242 * 109.82972 * 180.02562 * 3 2 1 5 5 C 1.50698 * 125.52468 * 179.97438 * 4 3 2 6 6 N 1.46905 * 109.47194 * 89.99886 * 5 4 3 7 7 C 1.46902 * 110.99800 * 180.02562 * 6 5 4 8 8 C 1.53006 * 109.46626 * 180.02562 * 7 6 5 9 9 H 1.08997 * 109.47395 * 65.00236 * 8 7 6 10 10 N 1.46493 * 109.47189 * 304.99760 * 8 7 6 11 11 C 1.34775 * 120.00149 * 155.00357 * 10 8 7 12 12 O 1.21281 * 119.99850 * 359.97438 * 11 10 8 13 13 C 1.50704 * 120.00045 * 180.02562 * 11 10 8 14 14 S 1.81000 * 109.46943 * 179.97438 * 13 11 10 15 15 C 1.76196 * 100.00079 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00217 * 359.97438 * 15 14 13 17 17 C 1.38802 * 120.00155 * 180.02562 * 15 14 13 18 18 N 1.31629 * 119.99970 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99997 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46738 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.46732 * 119.99507 * 19 17 15 22 22 H 1.48500 * 109.47020 * 239.99897 * 19 17 15 23 23 C 1.52999 * 109.46811 * 184.99853 * 8 7 6 24 24 C 1.52999 * 117.49908 * 248.74389 * 23 8 7 25 25 C 1.53004 * 117.49690 * 180.08574 * 23 8 7 26 26 N 1.30709 * 108.94871 * 0.26346 * 4 3 2 27 27 N 1.34435 * 125.96084 * 180.02562 * 2 1 3 28 28 H 0.96995 * 126.82293 * 359.97438 * 27 2 1 29 29 H 1.09007 * 109.47341 * 89.97840 * 1 2 3 30 30 H 1.09004 * 109.47400 * 209.97459 * 1 2 3 31 31 H 1.08997 * 109.47150 * 329.97888 * 1 2 3 32 32 H 1.09002 * 109.47213 * 329.99824 * 5 4 3 33 33 H 1.09001 * 109.47086 * 209.99580 * 5 4 3 34 34 H 1.00898 * 110.99743 * 303.94953 * 6 5 4 35 35 H 1.08993 * 109.47737 * 60.00169 * 7 6 5 36 36 H 1.09000 * 109.47263 * 299.99731 * 7 6 5 37 37 H 0.97003 * 120.00120 * 335.00451 * 10 8 7 38 38 H 1.08997 * 109.46521 * 299.99329 * 13 11 10 39 39 H 1.08997 * 109.47445 * 59.99951 * 13 11 10 40 40 H 0.96994 * 120.00006 * 180.02562 * 18 17 15 41 41 H 1.08996 * 115.54978 * 34.41403 * 23 8 7 42 42 H 1.09003 * 117.49885 * 0.02562 * 24 23 8 43 43 H 1.09007 * 117.50135 * 145.01957 * 24 23 8 44 44 H 1.08999 * 117.49668 * 214.97861 * 25 23 8 45 45 H 1.08996 * 117.50112 * 359.97438 * 25 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2752 1.0589 0.0000 4 6 3.5552 0.6887 -0.0006 5 6 4.7371 1.6235 -0.0013 6 7 5.1219 1.9276 1.3835 7 6 6.2733 2.8391 1.4219 8 6 6.6440 3.1312 2.8773 9 1 6.9864 2.2139 3.3563 10 7 5.4694 3.6436 3.5871 11 6 5.3752 3.5024 4.9241 12 8 6.2626 2.9505 5.5396 13 6 4.1665 4.0291 5.6541 14 16 4.3347 3.6883 7.4238 15 6 2.8305 4.3901 8.0148 16 1 2.1406 4.8500 7.3228 17 6 2.5326 4.3528 9.3700 18 7 3.3736 3.7927 10.2135 19 14 0.9374 5.0962 9.9964 20 1 0.1718 5.6588 8.8551 21 1 0.1298 4.0441 10.6642 22 1 1.2430 6.1770 10.9678 23 6 7.7611 4.1758 2.9192 24 6 9.1407 3.7162 3.3952 25 6 8.2768 4.6039 4.2946 26 7 3.6194 -0.6168 -0.0066 27 7 2.2964 -1.0881 -0.0005 28 1 2.0093 -2.0146 -0.0006 29 1 -0.3634 0.0004 -1.0277 30 1 -0.3634 -0.8902 0.5134 31 1 -0.3633 0.8898 0.5141 32 1 4.4698 2.5469 -0.5152 33 1 5.5740 1.1508 -0.5154 34 1 4.3429 2.3076 1.9000 35 1 6.0162 3.7708 0.9181 36 1 7.1209 2.3752 0.9175 37 1 4.7595 4.0847 3.0947 38 1 4.0873 5.1047 5.4968 39 1 3.2702 3.5392 5.2737 40 1 3.1653 3.7663 11.1605 41 1 7.7255 4.9338 2.1367 42 1 9.2525 2.6695 3.6782 43 1 10.0127 4.1721 2.9262 44 1 8.5808 5.6435 4.4169 45 1 7.8200 4.1417 5.1696 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699568216.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:08 Heat of formation + Delta-G solvation = 45.400299 kcal Electronic energy + Delta-G solvation = -26277.957603 eV Core-core repulsion = 22458.062144 eV Total energy + Delta-G solvation = -3819.895459 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.14477 -41.03489 -38.51885 -37.17356 -35.12457 -34.57943 -33.74390 -33.35675 -31.50071 -29.76068 -28.82021 -27.65730 -26.68450 -23.42983 -23.08701 -22.53475 -22.08667 -21.44479 -21.22751 -19.82042 -18.86142 -18.02384 -17.36588 -16.98695 -16.88040 -16.80392 -16.72802 -16.01435 -15.83632 -15.57897 -15.17121 -15.01485 -14.66025 -14.52531 -14.42210 -13.77321 -13.66463 -13.51328 -13.20340 -13.15429 -13.02259 -12.91680 -12.82658 -12.72121 -12.60271 -12.48471 -12.22853 -11.70212 -11.26778 -11.20491 -11.15219 -11.11984 -11.06781 -10.75095 -10.52706 -10.25456 -9.98067 -9.45235 -8.64613 -8.34262 -6.11496 0.56547 1.27938 1.41166 1.47513 1.58714 1.67288 1.70112 1.75442 2.23764 2.29210 2.91385 2.99788 3.03774 3.26589 3.35181 3.57046 3.78725 3.91442 3.97704 4.04504 4.16179 4.25377 4.30823 4.33543 4.42011 4.48716 4.51562 4.56521 4.68922 4.74587 4.78585 4.86180 4.91966 5.05382 5.10327 5.24399 5.32105 5.35765 5.42049 5.42558 5.57769 5.90169 6.17005 6.20395 6.23888 6.55260 7.06583 7.07125 7.33195 8.75157 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.007563 B = 0.003070 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3701.372526 B = 9117.870276 C =12279.970082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.284 3.716 3 N -0.569 5.569 4 C 0.218 3.782 5 C 0.158 3.842 6 N -0.698 5.698 7 C 0.070 3.930 8 C 0.180 3.820 9 H 0.064 0.936 10 N -0.705 5.705 11 C 0.539 3.461 12 O -0.554 6.554 13 C -0.130 4.130 14 S -0.147 6.147 15 C -0.546 4.546 16 H 0.081 0.919 17 C 0.013 3.987 18 N -0.911 5.911 19 Si 0.998 3.002 20 H -0.257 1.257 21 H -0.274 1.274 22 H -0.274 1.274 23 C -0.155 4.155 24 C -0.159 4.159 25 C -0.206 4.206 26 N -0.332 5.332 27 N -0.478 5.478 28 H 0.454 0.546 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.105 0.895 34 H 0.343 0.657 35 H 0.067 0.933 36 H 0.106 0.894 37 H 0.410 0.590 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.271 0.729 41 H 0.132 0.868 42 H 0.082 0.918 43 H 0.116 0.884 44 H 0.093 0.907 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.172 -3.571 -28.282 28.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.007 3.993 3 N -0.300 5.300 4 C -0.065 4.065 5 C 0.027 3.973 6 N -0.331 5.331 7 C -0.059 4.059 8 C 0.076 3.924 9 H 0.082 0.918 10 N -0.358 5.358 11 C 0.325 3.675 12 O -0.432 6.432 13 C -0.281 4.281 14 S 0.081 5.919 15 C -0.694 4.694 16 H 0.099 0.901 17 C -0.191 4.191 18 N -0.548 5.548 19 Si 0.820 3.180 20 H -0.180 1.180 21 H -0.199 1.199 22 H -0.199 1.199 23 C -0.174 4.174 24 C -0.196 4.196 25 C -0.244 4.244 26 N -0.163 5.163 27 N -0.198 5.198 28 H 0.302 0.698 29 H 0.131 0.869 30 H 0.126 0.874 31 H 0.116 0.884 32 H 0.095 0.905 33 H 0.123 0.877 34 H 0.161 0.839 35 H 0.086 0.914 36 H 0.124 0.876 37 H 0.246 0.754 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.080 0.920 41 H 0.150 0.850 42 H 0.101 0.899 43 H 0.134 0.866 44 H 0.112 0.888 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.303 -5.144 -27.076 27.562 hybrid contribution -2.691 1.114 -0.065 2.913 sum -2.388 -4.031 -27.140 27.542 Atomic orbital electron populations 1.20634 0.80448 1.06332 1.06094 1.25201 0.98203 0.82226 0.93708 1.70361 1.01661 1.31051 1.26899 1.24461 0.93751 0.90447 0.97831 1.20146 0.91156 0.95365 0.90584 1.60291 1.10461 1.49688 1.12673 1.22180 0.94434 0.95650 0.93646 1.20560 0.84303 0.95112 0.92454 0.91821 1.45744 1.23473 1.60779 1.05852 1.19895 0.86607 0.78078 0.82892 1.90635 1.41412 1.43430 1.67702 1.23370 0.99844 1.05110 0.99798 1.85541 1.29886 1.78141 0.98377 1.23242 1.06142 1.43812 0.96199 0.90104 1.26124 1.01752 0.95409 0.95864 1.70190 1.37790 1.43088 1.03730 0.84915 0.76780 0.77911 0.78402 1.18028 1.19894 1.19891 1.22696 0.94637 1.01733 0.98337 1.22963 0.93981 0.99794 1.02898 1.23162 1.05559 1.00434 0.95202 1.77945 0.98372 1.12989 1.26953 1.47986 1.03544 1.11031 1.57236 0.69796 0.86929 0.87420 0.88419 0.90536 0.87678 0.83860 0.91449 0.87566 0.75379 0.87558 0.87896 0.92028 0.85047 0.89912 0.86556 0.88807 0.90052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.51 71.23 0.75 0.25 16 2 C 0.28 4.71 8.24 138.22 1.14 5.85 16 3 N -0.57 -12.70 11.19 -179.73 -2.01 -14.71 16 4 C 0.22 5.00 7.65 138.63 1.06 6.06 16 5 C 0.16 2.75 6.31 85.56 0.54 3.29 16 6 N -0.70 -13.67 6.48 -517.91 -3.36 -17.03 16 7 C 0.07 1.07 5.28 86.31 0.46 1.52 16 8 C 0.18 4.09 2.58 44.99 0.12 4.21 16 9 H 0.06 1.93 7.33 -2.39 -0.02 1.91 16 10 N -0.71 -18.05 4.34 -442.54 -1.92 -19.97 16 11 C 0.54 20.12 7.18 87.66 0.63 20.75 16 12 O -0.55 -25.50 12.89 -3.03 -0.04 -25.54 16 13 C -0.13 -5.29 6.16 71.24 0.44 -4.85 16 14 S -0.15 -8.27 20.57 -56.49 -1.16 -9.43 16 15 C -0.55 -31.65 9.50 67.96 0.65 -31.00 16 16 H 0.08 4.38 7.80 -2.91 -0.02 4.35 16 17 C 0.01 0.76 5.49 84.86 0.47 1.22 16 18 N -0.91 -56.61 13.22 21.65 0.29 -56.33 16 19 Si 1.00 44.05 29.55 68.60 2.03 46.07 16 20 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 23 C -0.15 -3.22 5.36 -10.79 -0.06 -3.28 16 24 C -0.16 -3.49 10.18 30.62 0.31 -3.18 16 25 C -0.21 -5.81 9.74 30.62 0.30 -5.51 16 26 N -0.33 -7.97 12.80 -51.34 -0.66 -8.63 16 27 N -0.48 -8.02 7.45 -50.71 -0.38 -8.40 16 28 H 0.45 4.22 8.96 -213.10 -1.91 2.31 16 29 H 0.11 0.31 8.14 -2.38 -0.02 0.29 16 30 H 0.11 0.21 8.14 -2.38 -0.02 0.19 16 31 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.34 7.37 7.57 -89.70 -0.68 6.69 16 35 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.41 7.92 8.15 -92.71 -0.76 7.17 16 38 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 39 H 0.10 3.86 8.14 -2.40 -0.02 3.85 16 40 H 0.27 15.56 8.31 -92.71 -0.77 14.78 16 41 H 0.13 1.99 8.11 -2.39 -0.02 1.97 16 42 H 0.08 2.03 8.05 -2.39 -0.02 2.01 16 43 H 0.12 1.94 8.14 -2.38 -0.02 1.92 16 44 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 45 H 0.08 3.10 5.02 -2.39 -0.01 3.09 16 Total: -1.00 -85.49 392.86 -2.72 -88.21 By element: Atomic # 1 Polarization: 32.71 SS G_CDS: -2.30 Total: 30.41 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: 6.79 Total: -4.66 kcal Atomic # 7 Polarization: -117.03 SS G_CDS: -8.04 Total: -125.06 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.04 Total: -25.54 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: -8.27 SS G_CDS: -1.16 Total: -9.43 kcal Total: -85.49 -2.72 -88.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699568216.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.612 kcal (2) G-P(sol) polarization free energy of solvation -85.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds