Wall clock time and date at job start Sat Apr 11 2020 05:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.46666 * 2 1 4 4 C 1.35623 * 125.67506 * 265.53820 * 3 2 1 5 5 C 1.35521 * 108.85385 * 180.02562 * 4 3 2 6 6 Cl 1.73595 * 126.07917 * 180.02562 * 5 4 3 7 7 C 1.39895 * 107.84837 * 359.77519 * 5 4 3 8 8 C 1.37641 * 125.67334 * 85.58578 * 3 2 1 9 9 C 1.46664 * 126.22524 * 359.92386 * 8 3 2 10 10 O 1.21689 * 119.99990 * 351.93803 * 9 8 3 11 11 N 1.34778 * 119.99654 * 171.94497 * 9 8 3 12 12 C 1.48141 * 127.84091 * 353.27565 * 11 9 8 13 13 C 1.54389 * 104.62291 * 219.59151 * 12 11 9 14 14 H 1.09002 * 110.33958 * 95.00520 * 13 12 11 15 15 C 1.52999 * 110.34518 * 217.15893 * 13 12 11 16 16 C 1.54287 * 104.95755 * 336.13443 * 13 12 11 17 17 H 1.09005 * 110.33950 * 118.86458 * 16 13 12 18 18 C 1.52992 * 110.34591 * 241.01892 * 16 13 12 19 19 N 1.46497 * 109.47287 * 184.99949 * 18 16 13 20 20 C 1.36938 * 119.99933 * 180.02562 * 19 18 16 21 21 H 1.07999 * 120.00136 * 0.02562 * 20 19 18 22 22 C 1.38812 * 120.00276 * 180.02562 * 20 19 18 23 23 N 1.31610 * 120.00396 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99690 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47036 * 89.99718 * 24 22 20 26 26 H 1.48502 * 109.47400 * 209.99888 * 24 22 20 27 27 H 1.48500 * 109.47077 * 329.99913 * 24 22 20 28 28 C 1.48144 * 127.83394 * 173.28798 * 11 9 8 29 29 H 1.09003 * 109.46825 * 180.20460 * 1 2 3 30 30 H 1.08995 * 109.47526 * 300.20583 * 1 2 3 31 31 H 1.09005 * 109.47313 * 60.20946 * 1 2 3 32 32 H 1.08994 * 109.47346 * 239.99986 * 2 1 3 33 33 H 1.09000 * 109.47125 * 119.99994 * 2 1 3 34 34 H 1.08002 * 125.58016 * 0.05760 * 4 3 2 35 35 H 1.07997 * 126.45120 * 180.23592 * 7 5 4 36 36 H 1.09009 * 110.40347 * 100.80709 * 12 11 9 37 37 H 1.09001 * 110.40911 * 338.38230 * 12 11 9 38 38 H 1.09005 * 109.46955 * 58.54959 * 15 13 12 39 39 H 1.09003 * 109.46841 * 178.54351 * 15 13 12 40 40 H 1.08995 * 109.46956 * 298.54832 * 15 13 12 41 41 H 1.08994 * 109.47275 * 305.00677 * 18 16 13 42 42 H 1.09010 * 109.46674 * 65.00158 * 18 16 13 43 43 H 0.97005 * 120.00047 * 0.02562 * 19 18 16 44 44 H 0.97008 * 120.00266 * 180.02562 * 23 22 20 45 45 H 1.08998 * 110.41210 * 21.62381 * 28 11 9 46 46 H 1.09002 * 110.50339 * 259.24012 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3626 2.0984 -1.0984 5 6 2.7667 3.3315 -0.7073 6 17 3.3045 4.6099 -1.7513 7 6 2.6679 3.3930 0.6868 8 6 2.2046 2.1668 1.1148 9 6 1.9501 1.7734 2.5046 10 8 1.3978 0.7163 2.7464 11 7 2.3277 2.5828 3.5139 12 6 3.1249 3.8286 3.4301 13 6 4.0621 3.7749 4.6559 14 1 5.0280 3.3543 4.3761 15 6 4.2436 5.1737 5.2485 16 6 3.3467 2.8516 5.6639 17 1 3.9613 1.9774 5.8793 18 6 3.0353 3.6125 6.9541 19 7 2.4659 2.6903 7.9397 20 6 2.1062 3.1491 9.1788 21 1 2.2420 4.1908 9.4294 22 6 1.5672 2.2752 10.1130 23 7 1.2210 2.7162 11.3037 24 14 1.3330 0.4732 9.6799 25 1 2.5564 -0.2862 10.0432 26 1 0.1723 -0.0696 10.4306 27 1 1.0842 0.3429 8.2217 28 6 2.0400 2.4283 4.9589 29 1 -0.3633 -1.0277 0.0037 30 1 -0.3634 0.5170 0.8881 31 1 -0.3634 0.5106 -0.8919 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.3211 1.7450 -2.1181 35 1 2.9111 4.2405 1.3105 36 1 2.4738 4.7010 3.4875 37 1 3.7058 3.8469 2.5080 38 1 3.2718 5.5758 5.5350 39 1 4.8860 5.1155 6.1271 40 1 4.7021 5.8263 4.5056 41 1 3.9532 4.0467 7.3504 42 1 2.3191 4.4069 6.7435 43 1 2.3436 1.7547 7.7146 44 1 0.8446 2.1054 11.9566 45 1 1.8024 1.3900 5.1903 46 1 1.2191 3.0806 5.2567 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699969984.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:19 Heat of formation + Delta-G solvation = 35.098675 kcal Electronic energy + Delta-G solvation = -27563.753258 eV Core-core repulsion = 23709.074629 eV Total energy + Delta-G solvation = -3854.678628 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.89817 -39.90371 -37.97524 -36.69665 -35.06239 -34.30818 -32.97208 -31.40508 -30.45805 -29.55157 -28.85179 -26.82441 -25.40882 -24.09581 -23.53497 -22.01407 -21.55166 -21.12508 -19.39434 -19.11121 -17.73610 -17.18196 -16.70998 -16.03779 -15.67293 -15.44499 -15.04291 -14.83219 -14.62071 -14.38897 -14.06731 -13.81489 -13.54274 -13.24938 -13.18664 -12.99863 -12.98891 -12.59347 -12.43363 -12.19749 -12.07614 -12.02083 -11.71979 -11.64087 -11.54951 -11.23775 -11.13328 -10.92916 -10.58447 -10.39989 -10.30937 -10.07961 -10.00149 -9.58830 -9.02061 -8.90730 -8.86163 -8.50951 -7.23156 -5.76879 -3.12536 1.12200 1.79019 2.12356 2.39368 3.06070 3.11521 3.38999 3.42646 3.46995 4.21217 4.33734 4.50798 4.51657 4.59955 4.67916 4.71404 4.81181 4.87538 4.93582 5.17658 5.18246 5.30478 5.34474 5.37218 5.45805 5.51038 5.54622 5.59729 5.63440 5.71189 5.74377 5.82213 5.92893 6.01562 6.03048 6.12841 6.18855 6.25817 6.38140 6.46398 6.64935 6.70066 6.72992 7.42071 7.98316 7.99164 8.42016 9.20982 9.93609 10.12708 11.41448 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.015449 B = 0.002851 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.963838 B = 9820.036407 C =11379.114040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.098 3.902 3 N -0.400 5.400 4 C 0.031 3.969 5 C -0.123 4.123 6 Cl -0.051 7.051 7 C -0.142 4.142 8 C -0.025 4.025 9 C 0.606 3.394 10 O -0.545 6.545 11 N -0.609 5.609 12 C 0.088 3.912 13 C -0.096 4.096 14 H 0.080 0.920 15 C -0.148 4.148 16 C -0.110 4.110 17 H 0.081 0.919 18 C 0.166 3.834 19 N -0.758 5.758 20 C -0.244 4.244 21 H 0.090 0.910 22 C 0.005 3.995 23 N -0.934 5.934 24 Si 0.882 3.118 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.276 1.276 28 C 0.116 3.884 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.176 0.824 35 H 0.165 0.835 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.053 0.947 41 H 0.037 0.963 42 H 0.032 0.968 43 H 0.360 0.640 44 H 0.259 0.741 45 H 0.083 0.917 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.752 0.543 -29.340 29.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.022 4.022 3 N -0.073 5.073 4 C -0.106 4.106 5 C -0.156 4.156 6 Cl -0.023 7.023 7 C -0.168 4.168 8 C -0.139 4.139 9 C 0.395 3.605 10 O -0.424 6.424 11 N -0.341 5.341 12 C -0.035 4.035 13 C -0.116 4.116 14 H 0.098 0.902 15 C -0.205 4.205 16 C -0.130 4.130 17 H 0.099 0.901 18 C 0.039 3.961 19 N -0.404 5.404 20 C -0.374 4.374 21 H 0.108 0.892 22 C -0.191 4.191 23 N -0.582 5.582 24 Si 0.713 3.287 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.202 1.202 28 C -0.005 4.005 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.125 0.875 34 H 0.194 0.806 35 H 0.182 0.818 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.054 0.946 42 H 0.050 0.950 43 H 0.193 0.807 44 H 0.069 0.931 45 H 0.101 0.899 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.274 -0.217 -29.149 29.462 hybrid contribution -0.172 -1.179 -0.346 1.240 sum 4.102 -1.396 -29.495 29.812 Atomic orbital electron populations 1.22085 0.93525 1.03384 1.03174 1.22108 0.96422 0.78600 1.05050 1.44044 1.46534 1.12043 1.04658 1.21700 1.05113 0.91516 0.92269 1.19930 1.12829 0.91276 0.91555 1.98327 1.89047 1.49133 1.65758 1.21753 1.04358 0.97335 0.93307 1.19981 1.13485 0.92358 0.88082 1.16376 0.78763 0.82945 0.82376 1.90820 1.44363 1.22683 1.84555 1.48578 1.53157 1.25034 1.07369 1.23065 0.93848 0.86795 0.99758 1.22057 0.98435 0.96967 0.94164 0.90183 1.21914 1.02964 0.94654 1.00987 1.22397 0.95705 0.99182 0.95674 0.90094 1.20840 0.96742 0.92200 0.86306 1.42787 1.77015 1.07367 1.13197 1.19035 1.34261 0.96297 0.87783 0.89172 1.24664 1.00999 0.97541 0.95858 1.69697 1.48711 1.34482 1.05308 0.86581 0.77649 0.86841 0.77678 1.21099 1.21724 1.20227 1.22522 0.97889 1.03224 0.76896 0.90463 0.90981 0.92324 0.89058 0.87526 0.80638 0.81798 0.90234 0.88954 0.91496 0.91312 0.92833 0.94557 0.95021 0.80739 0.93059 0.89897 0.89913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 10.16 37.16 0.38 -0.97 16 2 C 0.10 0.82 6.09 -4.04 -0.02 0.79 16 3 N -0.40 -3.98 2.76 -112.83 -0.31 -4.29 16 4 C 0.03 0.26 11.35 -16.85 -0.19 0.07 16 5 C -0.12 -1.17 6.66 -39.93 -0.27 -1.44 16 6 Cl -0.05 -0.45 29.30 -51.86 -1.52 -1.96 16 7 C -0.14 -1.46 9.19 -39.09 -0.36 -1.82 16 8 C -0.03 -0.30 6.83 -81.98 -0.56 -0.86 16 9 C 0.61 8.61 7.85 -12.86 -0.10 8.51 16 10 O -0.54 -9.14 14.48 5.20 0.08 -9.07 16 11 N -0.61 -8.06 3.32 -170.85 -0.57 -8.62 16 12 C 0.09 0.89 5.15 -2.41 -0.01 0.88 16 13 C -0.10 -1.05 3.65 -89.22 -0.33 -1.37 16 14 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 15 C -0.15 -1.48 7.91 37.16 0.29 -1.19 16 16 C -0.11 -1.58 3.09 -89.22 -0.28 -1.85 16 17 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 18 C 0.17 2.96 4.40 -4.05 -0.02 2.94 16 19 N -0.76 -17.51 5.28 -59.91 -0.32 -17.83 16 20 C -0.24 -6.81 10.47 -15.06 -0.16 -6.97 16 21 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 22 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 23 N -0.93 -29.33 13.97 55.49 0.78 -28.56 16 24 Si 0.88 22.29 27.74 -169.99 -4.71 17.58 16 25 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 27 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 28 C 0.12 1.75 6.44 -2.41 -0.02 1.74 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.81 7.53 -51.93 -0.39 0.41 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.48 8.12 -51.93 -0.42 0.06 16 33 H 0.11 1.08 6.78 -51.93 -0.35 0.73 16 34 H 0.18 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.16 1.45 5.05 -52.49 -0.27 1.18 16 36 H 0.08 0.73 7.86 -51.92 -0.41 0.33 16 37 H 0.09 0.80 4.98 -51.93 -0.26 0.54 16 38 H 0.07 0.72 6.77 -51.93 -0.35 0.37 16 39 H 0.07 0.75 6.87 -51.93 -0.36 0.39 16 40 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.04 0.65 6.58 -51.93 -0.34 0.31 16 42 H 0.03 0.57 6.88 -51.92 -0.36 0.21 16 43 H 0.36 8.26 5.47 -40.82 -0.22 8.04 16 44 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 45 H 0.08 1.41 7.84 -51.93 -0.41 1.00 16 46 H 0.08 1.30 7.76 -51.93 -0.40 0.89 16 LS Contribution 375.96 15.07 5.67 5.67 Total: -1.00 -33.33 375.96 -9.31 -42.64 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -6.66 Total: 5.92 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -1.73 Total: -1.48 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: -0.42 Total: -59.29 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.08 Total: -9.07 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.71 Total: 17.58 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.52 Total: -1.96 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.33 -9.31 -42.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699969984.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.742 kcal (2) G-P(sol) polarization free energy of solvation -33.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds