Wall clock time and date at job start Sat Apr 11 2020 05:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47030 * 2 1 4 4 C 1.35629 * 125.67742 * 265.15515 * 3 2 1 5 5 C 1.35516 * 108.85529 * 180.02562 * 4 3 2 6 6 Cl 1.73591 * 126.07557 * 180.02562 * 5 4 3 7 7 C 1.39890 * 107.84853 * 359.77453 * 5 4 3 8 8 C 1.37635 * 125.67449 * 85.19694 * 3 2 1 9 9 C 1.46670 * 126.22389 * 359.92732 * 8 3 2 10 10 O 1.21691 * 120.00205 * 8.61270 * 9 8 3 11 11 N 1.34777 * 119.99909 * 188.60663 * 9 8 3 12 12 C 1.47490 * 127.03401 * 358.84307 * 11 9 8 13 13 C 1.54002 * 107.08392 * 154.29071 * 12 11 9 14 14 H 1.09006 * 110.32631 * 242.31758 * 13 12 11 15 15 C 1.52996 * 110.32968 * 120.19995 * 13 12 11 16 16 C 1.54618 * 105.04318 * 1.30317 * 13 12 11 17 17 H 1.08997 * 110.74166 * 263.33014 * 16 13 12 18 18 C 1.53007 * 110.73621 * 140.18998 * 16 13 12 19 19 N 1.46499 * 109.46802 * 175.00274 * 18 16 13 20 20 C 1.36944 * 119.99577 * 179.97438 * 19 18 16 21 21 H 1.07997 * 119.99655 * 359.97438 * 20 19 18 22 22 C 1.38812 * 119.99710 * 179.97438 * 20 19 18 23 23 N 1.31619 * 119.99581 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 120.00226 * 359.97438 * 22 20 19 25 25 H 1.48506 * 109.47229 * 89.99898 * 24 22 20 26 26 H 1.48493 * 109.47239 * 210.00270 * 24 22 20 27 27 H 1.48505 * 109.46887 * 329.99948 * 24 22 20 28 28 C 1.48118 * 127.03572 * 178.52825 * 11 9 8 29 29 H 1.09005 * 109.47070 * 295.01704 * 1 2 3 30 30 H 1.08998 * 109.46937 * 55.01286 * 1 2 3 31 31 H 1.08998 * 109.47563 * 175.01695 * 1 2 3 32 32 H 1.09000 * 109.47084 * 240.00119 * 2 1 3 33 33 H 1.09000 * 109.46845 * 119.99972 * 2 1 3 34 34 H 1.08003 * 125.57260 * 0.02562 * 4 3 2 35 35 H 1.07995 * 126.45209 * 180.23364 * 7 5 4 36 36 H 1.08998 * 109.91176 * 273.65443 * 12 11 9 37 37 H 1.09004 * 109.90962 * 34.73736 * 12 11 9 38 38 H 1.09005 * 109.46653 * 61.45280 * 15 13 12 39 39 H 1.08997 * 109.47103 * 181.45365 * 15 13 12 40 40 H 1.08994 * 109.46942 * 301.45573 * 15 13 12 41 41 H 1.08999 * 109.46820 * 295.00255 * 18 16 13 42 42 H 1.08997 * 109.47109 * 55.00148 * 18 16 13 43 43 H 0.97003 * 120.00313 * 359.97438 * 19 18 16 44 44 H 0.97002 * 119.99519 * 179.97438 * 23 22 20 45 45 H 1.09004 * 110.65725 * 337.99537 * 28 11 9 46 46 H 1.09000 * 110.66199 * 101.11190 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3697 2.0960 -1.0978 5 6 2.7714 3.3299 -0.7070 6 17 3.3159 4.6058 -1.7504 7 6 2.6638 3.3945 0.6863 8 6 2.1976 2.1692 1.1141 9 6 1.9343 1.7790 2.5032 10 8 1.6679 0.6220 2.7702 11 7 1.9874 2.7018 3.4841 12 6 2.3163 4.1324 3.3409 13 6 1.6416 4.8711 4.5117 14 1 0.9081 5.5849 4.1367 15 6 2.6913 5.5872 5.3639 16 6 0.9444 3.7644 5.3361 17 1 -0.1077 3.6842 5.0626 18 6 1.0935 4.0304 6.8354 19 7 0.3247 3.0351 7.5867 20 6 0.3084 3.0732 8.9555 21 1 0.8627 3.8367 9.4811 22 6 -0.4205 2.1305 9.6675 23 7 -0.4357 2.1668 10.9831 24 14 -1.3798 0.8104 8.7584 25 1 -0.5137 -0.3784 8.5535 26 1 -2.5698 0.4240 9.5581 27 1 -1.8185 1.3363 7.4406 28 6 1.7210 2.4882 4.9254 29 1 -0.3633 0.4346 0.9313 30 1 -0.3633 0.5893 -0.8419 31 1 -0.3634 -1.0237 -0.0893 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.3351 1.7400 -2.1169 35 1 2.9031 4.2433 1.3097 36 1 3.3964 4.2714 3.3872 37 1 1.9342 4.5080 2.3916 38 1 3.2095 6.3283 4.7551 39 1 2.2019 6.0834 6.2020 40 1 3.4102 4.8602 5.7415 41 1 2.1452 3.9628 7.1135 42 1 0.7201 5.0280 7.0663 43 1 -0.1729 2.3492 7.1147 44 1 -0.9454 1.5083 11.4805 45 1 1.1077 1.5997 5.0755 46 1 2.6551 2.4106 5.4817 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699969985.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:22 Heat of formation + Delta-G solvation = 13.128144 kcal Electronic energy + Delta-G solvation = -27614.711677 eV Core-core repulsion = 23759.080335 eV Total energy + Delta-G solvation = -3855.631342 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.67884 -40.95352 -39.08183 -37.37261 -36.66587 -35.21293 -34.25116 -33.15513 -31.52104 -30.25712 -30.05514 -27.76787 -26.96833 -25.11362 -24.51263 -23.56587 -22.44626 -21.89170 -20.58771 -20.31030 -19.37198 -18.24327 -17.67770 -17.13484 -16.68069 -16.55527 -16.27405 -15.83696 -15.75381 -15.48874 -15.12578 -14.95401 -14.81651 -14.38664 -14.30618 -14.09216 -13.96492 -13.67975 -13.58954 -13.42036 -13.12050 -13.08974 -12.90225 -12.83974 -12.61314 -12.39524 -12.26285 -12.15457 -11.84701 -11.83498 -11.63135 -11.54526 -11.33519 -11.07639 -10.95250 -9.89733 -9.76591 -9.28948 -9.25908 -8.04101 -5.36237 0.29251 1.09703 1.35012 1.37388 1.41951 1.43532 1.54605 2.15762 2.23558 2.45607 3.24105 3.28424 3.52266 3.58956 3.73337 3.80396 3.93340 3.96377 4.03143 4.07103 4.23117 4.31280 4.33223 4.43463 4.44445 4.54613 4.62813 4.68273 4.75747 4.77677 4.81313 4.87849 4.90319 4.99221 5.09460 5.12293 5.21733 5.23607 5.38040 5.41716 5.55760 5.70526 5.76505 6.02972 6.20549 6.40114 6.94957 7.07066 7.84373 8.00809 9.17507 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.015215 B = 0.002919 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.904998 B = 9591.303253 C =11152.606811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.092 3.908 3 N -0.404 5.404 4 C 0.050 3.950 5 C -0.140 4.140 6 Cl -0.043 7.043 7 C -0.133 4.133 8 C -0.058 4.058 9 C 0.597 3.403 10 O -0.585 6.585 11 N -0.607 5.607 12 C 0.090 3.910 13 C -0.087 4.087 14 H 0.105 0.895 15 C -0.147 4.147 16 C -0.100 4.100 17 H 0.075 0.925 18 C 0.168 3.832 19 N -0.762 5.762 20 C -0.228 4.228 21 H 0.063 0.937 22 C -0.061 4.061 23 N -0.982 5.982 24 Si 0.947 3.053 25 H -0.283 1.283 26 H -0.294 1.294 27 H -0.257 1.257 28 C 0.118 3.882 29 H 0.032 0.968 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.129 0.871 33 H 0.086 0.914 34 H 0.210 0.790 35 H 0.180 0.820 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.083 0.917 39 H 0.058 0.942 40 H 0.052 0.948 41 H 0.038 0.962 42 H 0.037 0.963 43 H 0.362 0.638 44 H 0.257 0.743 45 H 0.056 0.944 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.693 3.963 -32.446 33.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.028 4.028 3 N -0.077 5.077 4 C -0.088 4.088 5 C -0.172 4.172 6 Cl -0.015 7.015 7 C -0.159 4.159 8 C -0.171 4.171 9 C 0.388 3.612 10 O -0.468 6.468 11 N -0.338 5.338 12 C -0.032 4.032 13 C -0.106 4.106 14 H 0.123 0.877 15 C -0.204 4.204 16 C -0.120 4.120 17 H 0.094 0.906 18 C 0.042 3.958 19 N -0.408 5.408 20 C -0.359 4.359 21 H 0.081 0.919 22 C -0.253 4.253 23 N -0.633 5.633 24 Si 0.775 3.225 25 H -0.209 1.209 26 H -0.220 1.220 27 H -0.182 1.182 28 C -0.004 4.004 29 H 0.051 0.949 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.147 0.853 33 H 0.105 0.895 34 H 0.227 0.773 35 H 0.197 0.803 36 H 0.111 0.889 37 H 0.125 0.875 38 H 0.101 0.899 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.194 0.806 44 H 0.066 0.934 45 H 0.075 0.925 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.531 3.117 -32.234 33.248 hybrid contribution -0.756 -1.011 0.418 1.329 sum 6.775 2.107 -31.816 32.597 Atomic orbital electron populations 1.22039 0.93646 1.04150 1.01744 1.22272 0.96223 0.78254 1.06034 1.44224 1.46409 1.12408 1.04616 1.22294 1.02417 0.90918 0.93132 1.20035 1.13603 0.92083 0.91528 1.98331 1.88805 1.48968 1.65369 1.22037 1.03176 0.96646 0.94063 1.19716 1.16489 0.93423 0.87442 1.16840 0.76813 0.83913 0.83623 1.90783 1.52334 1.19521 1.84151 1.48448 1.67679 1.10558 1.07107 1.23008 1.01471 0.78250 1.00440 1.22053 0.98313 0.96037 0.94207 0.87664 1.21923 0.98030 1.00448 0.99970 1.22421 0.99659 0.94977 0.94934 0.90636 1.20877 0.94778 0.91675 0.88449 1.42858 1.59742 1.35530 1.02665 1.19058 1.23708 1.10508 0.82640 0.91884 1.25412 1.02201 1.01724 0.95943 1.69864 1.47727 1.39270 1.06449 0.85527 0.78472 0.79920 0.78576 1.20915 1.22014 1.18211 1.22446 0.99915 0.98496 0.79571 0.94888 0.90915 0.88847 0.85306 0.89534 0.77292 0.80339 0.88858 0.87520 0.89853 0.92259 0.92934 0.94422 0.94483 0.80577 0.93369 0.92495 0.90378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 10.24 71.98 0.74 -1.72 16 2 C 0.09 1.43 6.24 86.38 0.54 1.97 16 3 N -0.40 -7.36 2.76 -510.86 -1.41 -8.77 16 4 C 0.05 0.69 11.35 83.48 0.95 1.64 16 5 C -0.14 -2.25 6.66 22.04 0.15 -2.10 16 6 Cl -0.04 -0.62 29.30 -2.72 -0.08 -0.70 16 7 C -0.13 -2.39 9.23 22.59 0.21 -2.19 16 8 C -0.06 -1.29 6.85 40.36 0.28 -1.02 16 9 C 0.60 17.07 7.85 86.44 0.68 17.74 16 10 O -0.59 -20.69 14.97 -4.32 -0.06 -20.75 16 11 N -0.61 -15.54 3.29 -814.08 -2.68 -18.22 16 12 C 0.09 1.55 5.06 86.53 0.44 1.99 16 13 C -0.09 -1.62 3.53 -9.91 -0.03 -1.65 16 14 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 15 C -0.15 -2.54 7.79 71.98 0.56 -1.98 16 16 C -0.10 -2.77 3.01 -9.58 -0.03 -2.80 16 17 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 18 C 0.17 5.94 4.44 86.38 0.38 6.33 16 19 N -0.76 -35.52 5.33 -343.44 -1.83 -37.35 16 20 C -0.23 -13.02 10.47 84.03 0.88 -12.14 16 21 H 0.06 3.88 8.06 -2.91 -0.02 3.86 16 22 C -0.06 -3.66 5.50 84.86 0.47 -3.19 16 23 N -0.98 -63.57 13.97 21.65 0.30 -63.27 16 24 Si 0.95 47.05 27.73 68.60 1.90 48.95 16 25 H -0.28 -13.93 7.11 99.48 0.71 -13.23 16 26 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 27 H -0.26 -11.75 6.52 99.48 0.65 -11.10 16 28 C 0.12 3.54 6.45 86.73 0.56 4.10 16 29 H 0.03 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 31 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.13 1.01 8.12 -2.39 -0.02 0.99 16 33 H 0.09 1.86 6.44 -2.39 -0.02 1.84 16 34 H 0.21 1.32 8.06 -2.91 -0.02 1.30 16 35 H 0.18 2.52 4.80 -2.91 -0.01 2.51 16 36 H 0.09 1.32 7.63 -2.39 -0.02 1.30 16 37 H 0.11 1.49 5.20 -2.38 -0.01 1.47 16 38 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 39 H 0.06 1.18 6.76 -2.39 -0.02 1.16 16 40 H 0.05 1.01 7.51 -2.39 -0.02 1.00 16 41 H 0.04 1.33 6.80 -2.39 -0.02 1.32 16 42 H 0.04 1.31 7.37 -2.39 -0.02 1.29 16 43 H 0.36 16.61 5.53 -92.71 -0.51 16.10 16 44 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 45 H 0.06 2.02 7.86 -2.38 -0.02 2.00 16 46 H 0.08 2.35 7.94 -2.39 -0.02 2.33 16 Total: -1.00 -75.59 377.97 3.33 -72.26 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: 0.43 Total: 22.88 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: 6.76 Total: 4.97 kcal Atomic # 7 Polarization: -121.99 SS G_CDS: -5.62 Total: -127.60 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.06 Total: -20.75 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 1.90 Total: 48.95 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -0.08 Total: -0.70 kcal Total: -75.59 3.33 -72.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699969985.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.388 kcal (2) G-P(sol) polarization free energy of solvation -75.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds