Wall clock time and date at job start Sat Apr 11 2020 05:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 110.88828 * 2 1 4 4 C 1.55131 * 110.93991 * 124.08239 * 2 1 3 5 5 N 1.47427 * 104.72398 * 155.28693 * 4 2 1 6 6 C 1.34776 * 125.64826 * 155.81835 * 5 4 2 7 7 O 1.21282 * 119.99940 * 179.69354 * 6 5 4 8 8 C 1.50698 * 120.00035 * 359.68469 * 6 5 4 9 9 S 1.81000 * 109.47349 * 180.02562 * 8 6 5 10 10 C 1.76194 * 100.00068 * 180.02562 * 9 8 6 11 11 H 1.08006 * 120.00457 * 359.97438 * 10 9 8 12 12 C 1.38801 * 120.00163 * 180.02562 * 10 9 8 13 13 N 1.31640 * 119.99650 * 359.97438 * 12 10 9 14 14 Si 1.86792 * 120.00461 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47169 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.47142 * 119.99526 * 14 12 10 17 17 H 1.48498 * 109.47657 * 239.99984 * 14 12 10 18 18 C 1.47024 * 108.69878 * 335.54845 * 5 4 2 19 19 C 1.54317 * 107.27283 * 1.29168 * 18 5 4 20 20 H 1.08997 * 110.72082 * 140.55504 * 19 18 5 21 21 N 1.46905 * 110.72010 * 263.64854 * 19 18 5 22 22 C 1.46907 * 110.99712 * 273.55009 * 21 19 18 23 23 C 1.50703 * 109.46489 * 179.97438 * 22 21 19 24 24 N 1.30832 * 125.96159 * 269.68745 * 23 22 21 25 25 C 1.33244 * 109.82643 * 179.87357 * 24 23 22 26 26 N 1.30709 * 108.94892 * 0.40067 * 25 24 23 27 27 N 1.34430 * 125.95901 * 90.00608 * 23 22 21 28 28 C 1.46496 * 126.82494 * 0.02562 * 27 23 22 29 29 H 1.08995 * 109.47172 * 183.87789 * 1 2 3 30 30 H 1.09002 * 109.46801 * 303.87906 * 1 2 3 31 31 H 1.08999 * 109.47075 * 63.87597 * 1 2 3 32 32 H 1.08999 * 110.49634 * 36.43871 * 4 2 1 33 33 H 1.09002 * 110.33994 * 274.05186 * 4 2 1 34 34 H 1.09001 * 109.47122 * 60.00223 * 8 6 5 35 35 H 1.09004 * 109.47371 * 300.00514 * 8 6 5 36 36 H 0.97001 * 119.99781 * 180.02562 * 13 12 10 37 37 H 1.09010 * 109.87781 * 120.70962 * 18 5 4 38 38 H 1.08998 * 109.88460 * 241.86460 * 18 5 4 39 39 H 1.00899 * 110.99425 * 37.49751 * 21 19 18 40 40 H 1.08996 * 109.46927 * 299.99627 * 22 21 19 41 41 H 1.09002 * 109.47038 * 60.00111 * 22 21 19 42 42 H 1.07997 * 125.52219 * 180.13328 * 25 24 23 43 43 H 1.09002 * 109.46819 * 90.00666 * 28 27 23 44 44 H 1.08994 * 109.47296 * 210.00467 * 28 27 23 45 45 H 1.09003 * 109.47400 * 330.00798 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0845 -0.8119 1.2000 5 7 3.4281 -1.2423 0.7724 6 6 4.4491 -1.5606 1.5926 7 8 5.5141 -1.9086 1.1284 8 6 4.2674 -1.4838 3.0867 9 16 5.8063 -1.9677 3.9073 10 6 5.3226 -1.7924 5.5925 11 1 4.3217 -1.4679 5.8362 12 6 6.2283 -2.0703 6.6070 13 7 7.4484 -2.4654 6.3101 14 14 5.7158 -1.8838 8.3935 15 1 4.3035 -1.4293 8.4586 16 1 5.8479 -3.1911 9.0855 17 1 6.5886 -0.8822 9.0570 18 6 3.4678 -1.2732 -0.6970 19 6 2.0861 -0.8075 -1.2025 20 1 2.1915 -0.1693 -2.0799 21 7 1.2263 -1.9605 -1.5012 22 6 1.4468 -2.4405 -2.8720 23 6 0.5499 -3.6214 -3.1410 24 7 0.8505 -4.8776 -2.9330 25 6 -0.1772 -5.6516 -3.2795 26 7 -1.1472 -4.8959 -3.7228 27 7 -0.6963 -3.5681 -3.6421 28 6 -1.4367 -2.3645 -4.0285 29 1 -0.3633 -1.0253 0.0695 30 1 -0.3633 0.5729 0.8532 31 1 -0.3633 0.4525 -0.9227 32 1 1.4537 -1.6784 1.3985 33 1 2.1524 -0.1803 2.0858 34 1 3.4659 -2.1573 3.3903 35 1 4.0107 -0.4628 3.3695 36 1 8.0812 -2.6600 7.0190 37 1 4.2426 -0.5983 -1.0611 38 1 3.6658 -2.2882 -1.0413 39 1 1.3694 -2.7013 -0.8313 40 1 1.2181 -1.6420 -3.5778 41 1 2.4879 -2.7415 -2.9886 42 1 -0.2028 -6.7290 -3.2098 43 1 -1.2405 -2.1381 -5.0766 44 1 -2.5041 -2.5334 -3.8869 45 1 -1.1161 -1.5264 -3.4096 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700257312.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:36 Heat of formation + Delta-G solvation = 64.950586 kcal Electronic energy + Delta-G solvation = -26688.299066 eV Core-core repulsion = 22869.251371 eV Total energy + Delta-G solvation = -3819.047695 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.42988 -40.22637 -38.01905 -35.43828 -34.31613 -32.79514 -32.42438 -31.60301 -30.11171 -28.29573 -27.52988 -26.43020 -25.72336 -25.41093 -22.85978 -22.33113 -20.87005 -20.15972 -19.38315 -17.77571 -17.50947 -16.98593 -16.48700 -16.09962 -15.81543 -15.32969 -15.04508 -14.91833 -14.80367 -14.45592 -14.03296 -13.81239 -13.68266 -13.56425 -13.45214 -13.37320 -12.97180 -12.77362 -12.52426 -12.31755 -12.20878 -12.05493 -11.79297 -11.61667 -11.09394 -11.06957 -11.01157 -10.97085 -10.75100 -10.34110 -10.08900 -9.95785 -9.80502 -9.43598 -9.07265 -9.02036 -8.53240 -8.22805 -6.50194 -6.21595 -3.92186 1.20165 1.94650 2.57921 2.88901 3.05059 3.21743 3.26188 3.31321 3.47879 3.60931 3.87071 4.08474 4.17451 4.19923 4.29335 4.36294 4.64753 4.67035 4.72437 4.89467 4.97450 4.98674 5.05533 5.06416 5.13626 5.17952 5.25701 5.37401 5.43785 5.53061 5.64149 5.70306 5.76618 5.82180 5.91668 5.92739 6.09716 6.13169 6.13507 6.32519 6.36672 6.44725 6.75232 7.59811 7.63552 7.76743 8.35582 8.54316 9.23780 10.85910 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.017795 B = 0.002176 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.059456 B =12862.611995 C =13197.261915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.093 4.093 3 H 0.090 0.910 4 C 0.102 3.898 5 N -0.625 5.625 6 C 0.548 3.452 7 O -0.515 6.515 8 C -0.146 4.146 9 S -0.061 6.061 10 C -0.534 4.534 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.079 3.921 19 C 0.080 3.920 20 H 0.102 0.898 21 N -0.671 5.671 22 C 0.134 3.866 23 C 0.282 3.718 24 N -0.538 5.538 25 C 0.201 3.799 26 N -0.322 5.322 27 N -0.369 5.369 28 C 0.095 3.905 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.268 0.732 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.357 0.643 40 H 0.097 0.903 41 H 0.075 0.925 42 H 0.218 0.782 43 H 0.077 0.923 44 H 0.091 0.909 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.048 4.959 -21.562 29.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.113 4.113 3 H 0.108 0.892 4 C -0.022 4.022 5 N -0.363 5.363 6 C 0.337 3.663 7 O -0.389 6.389 8 C -0.296 4.296 9 S 0.165 5.835 10 C -0.682 4.682 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.205 1.205 17 H -0.206 1.206 18 C -0.046 4.046 19 C -0.030 4.030 20 H 0.120 0.880 21 N -0.303 5.303 22 C 0.003 3.997 23 C 0.005 3.995 24 N -0.266 5.266 25 C -0.102 4.102 26 N -0.151 5.151 27 N -0.160 5.160 28 C -0.047 4.047 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.177 0.823 40 H 0.115 0.885 41 H 0.093 0.907 42 H 0.234 0.766 43 H 0.096 0.904 44 H 0.110 0.890 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -19.191 4.415 -22.465 29.874 hybrid contribution -0.717 0.142 1.773 1.918 sum -19.908 4.557 -20.692 29.073 Atomic orbital electron populations 1.21472 0.92902 1.02719 1.01184 1.22447 0.97116 0.98608 0.93093 0.89164 1.22477 0.83336 0.98394 0.97953 1.48464 1.12571 1.69519 1.05739 1.20055 0.82257 0.75932 0.88104 1.90714 1.25512 1.45490 1.77150 1.23499 1.07806 1.05026 0.93294 1.85413 1.08959 1.87797 1.01301 1.22892 1.01340 1.52888 0.91072 0.90889 1.25002 0.94509 0.94558 0.99577 1.70035 1.04312 1.42621 1.33299 0.86111 0.78652 0.78000 0.82691 1.19615 1.20549 1.20570 1.22619 0.98209 1.01830 0.81898 1.22671 0.89246 0.92286 0.98833 0.88028 1.60579 1.56254 1.10973 1.02533 1.20395 0.96161 0.90770 0.92405 1.24097 0.85674 0.94825 0.94922 1.70520 1.30113 1.00073 1.25908 1.25972 0.86627 1.01286 0.96329 1.78062 1.23596 0.87128 1.26266 1.50197 1.12039 1.06440 1.47292 1.21995 0.98067 0.83099 1.01572 0.91436 0.93063 0.92488 0.91241 0.90248 0.89323 0.89324 0.92235 0.90964 0.91496 0.82334 0.88491 0.90707 0.76599 0.90409 0.89005 0.88202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 8.86 37.16 0.33 -0.40 16 2 C -0.09 -0.65 3.57 -88.35 -0.32 -0.97 16 3 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 4 C 0.10 1.03 6.07 -2.41 -0.01 1.01 16 5 N -0.63 -8.59 3.32 -170.38 -0.57 -9.15 16 6 C 0.55 10.54 7.87 -10.99 -0.09 10.45 16 7 O -0.51 -12.01 16.19 5.56 0.09 -11.92 16 8 C -0.15 -3.00 5.16 36.00 0.19 -2.81 16 9 S -0.06 -1.68 20.57 -107.50 -2.21 -3.90 16 10 C -0.53 -15.26 9.50 30.94 0.29 -14.97 16 11 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 12 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 13 N -0.87 -26.28 13.22 55.49 0.73 -25.54 16 14 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 15 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 C 0.08 0.85 6.32 -3.07 -0.02 0.83 16 19 C 0.08 0.53 3.01 -65.88 -0.20 0.33 16 20 H 0.10 0.48 7.89 -51.93 -0.41 0.07 16 21 N -0.67 -4.42 4.90 -106.05 -0.52 -4.94 16 22 C 0.13 0.83 5.62 -4.97 -0.03 0.80 16 23 C 0.28 2.54 7.49 -155.69 -1.17 1.37 16 24 N -0.54 -6.10 11.19 -11.97 -0.13 -6.23 16 25 C 0.20 2.03 13.03 -91.81 -1.20 0.84 16 26 N -0.32 -3.41 12.70 29.29 0.37 -3.04 16 27 N -0.37 -3.13 4.04 -65.10 -0.26 -3.39 16 28 C 0.09 0.39 11.16 59.84 0.67 1.06 16 29 H 0.07 0.46 7.37 -51.93 -0.38 0.07 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.68 7.99 -51.93 -0.41 0.27 16 33 H 0.08 0.82 7.48 -51.93 -0.39 0.43 16 34 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 35 H 0.09 1.68 7.85 -51.91 -0.41 1.28 16 36 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 38 H 0.07 0.79 7.69 -51.93 -0.40 0.39 16 39 H 0.36 3.14 8.41 -39.29 -0.33 2.81 16 40 H 0.10 0.35 7.70 -51.93 -0.40 -0.05 16 41 H 0.07 0.52 7.83 -51.93 -0.41 0.11 16 42 H 0.22 1.45 8.06 -52.49 -0.42 1.03 16 43 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 44 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.10 0.25 7.72 -51.93 -0.40 -0.15 16 LS Contribution 389.27 15.07 5.87 5.87 Total: -1.00 -37.56 389.27 -10.17 -47.73 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -6.87 Total: -1.48 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -1.64 Total: -0.45 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: -0.38 Total: -52.30 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.09 Total: -11.92 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.56 -10.17 -47.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700257312.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.680 kcal (2) G-P(sol) polarization free energy of solvation -37.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds