Wall clock time and date at job start Sat Apr 11 2020 05:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 110.88828 * 2 1 4 4 C 1.55131 * 110.93991 * 124.08239 * 2 1 3 5 5 N 1.47427 * 104.72398 * 155.28693 * 4 2 1 6 6 C 1.34776 * 125.64826 * 155.81835 * 5 4 2 7 7 O 1.21282 * 119.99940 * 179.69354 * 6 5 4 8 8 C 1.50698 * 120.00035 * 359.68469 * 6 5 4 9 9 S 1.81000 * 109.47349 * 180.02562 * 8 6 5 10 10 C 1.76194 * 100.00068 * 180.02562 * 9 8 6 11 11 H 1.08006 * 120.00457 * 359.97438 * 10 9 8 12 12 C 1.38801 * 120.00163 * 180.02562 * 10 9 8 13 13 N 1.31640 * 119.99650 * 359.97438 * 12 10 9 14 14 Si 1.86792 * 120.00461 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47169 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.47142 * 119.99526 * 14 12 10 17 17 H 1.48498 * 109.47657 * 239.99984 * 14 12 10 18 18 C 1.47024 * 108.69878 * 335.54845 * 5 4 2 19 19 C 1.54317 * 107.27283 * 1.29168 * 18 5 4 20 20 H 1.08997 * 110.72082 * 140.55504 * 19 18 5 21 21 N 1.46905 * 110.72010 * 263.64854 * 19 18 5 22 22 C 1.46907 * 110.99712 * 273.55009 * 21 19 18 23 23 C 1.50703 * 109.46489 * 179.97438 * 22 21 19 24 24 N 1.30832 * 125.96159 * 269.68745 * 23 22 21 25 25 C 1.33244 * 109.82643 * 179.87357 * 24 23 22 26 26 N 1.30709 * 108.94892 * 0.40067 * 25 24 23 27 27 N 1.34430 * 125.95901 * 90.00608 * 23 22 21 28 28 C 1.46496 * 126.82494 * 0.02562 * 27 23 22 29 29 H 1.08995 * 109.47172 * 183.87789 * 1 2 3 30 30 H 1.09002 * 109.46801 * 303.87906 * 1 2 3 31 31 H 1.08999 * 109.47075 * 63.87597 * 1 2 3 32 32 H 1.08999 * 110.49634 * 36.43871 * 4 2 1 33 33 H 1.09002 * 110.33994 * 274.05186 * 4 2 1 34 34 H 1.09001 * 109.47122 * 60.00223 * 8 6 5 35 35 H 1.09004 * 109.47371 * 300.00514 * 8 6 5 36 36 H 0.97001 * 119.99781 * 180.02562 * 13 12 10 37 37 H 1.09010 * 109.87781 * 120.70962 * 18 5 4 38 38 H 1.08998 * 109.88460 * 241.86460 * 18 5 4 39 39 H 1.00899 * 110.99425 * 37.49751 * 21 19 18 40 40 H 1.08996 * 109.46927 * 299.99627 * 22 21 19 41 41 H 1.09002 * 109.47038 * 60.00111 * 22 21 19 42 42 H 1.07997 * 125.52219 * 180.13328 * 25 24 23 43 43 H 1.09002 * 109.46819 * 90.00666 * 28 27 23 44 44 H 1.08994 * 109.47296 * 210.00467 * 28 27 23 45 45 H 1.09003 * 109.47400 * 330.00798 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0845 -0.8119 1.2000 5 7 3.4281 -1.2423 0.7724 6 6 4.4491 -1.5606 1.5926 7 8 5.5141 -1.9086 1.1284 8 6 4.2674 -1.4838 3.0867 9 16 5.8063 -1.9677 3.9073 10 6 5.3226 -1.7924 5.5925 11 1 4.3217 -1.4679 5.8362 12 6 6.2283 -2.0703 6.6070 13 7 7.4484 -2.4654 6.3101 14 14 5.7158 -1.8838 8.3935 15 1 4.3035 -1.4293 8.4586 16 1 5.8479 -3.1911 9.0855 17 1 6.5886 -0.8822 9.0570 18 6 3.4678 -1.2732 -0.6970 19 6 2.0861 -0.8075 -1.2025 20 1 2.1915 -0.1693 -2.0799 21 7 1.2263 -1.9605 -1.5012 22 6 1.4468 -2.4405 -2.8720 23 6 0.5499 -3.6214 -3.1410 24 7 0.8505 -4.8776 -2.9330 25 6 -0.1772 -5.6516 -3.2795 26 7 -1.1472 -4.8959 -3.7228 27 7 -0.6963 -3.5681 -3.6421 28 6 -1.4367 -2.3645 -4.0285 29 1 -0.3633 -1.0253 0.0695 30 1 -0.3633 0.5729 0.8532 31 1 -0.3633 0.4525 -0.9227 32 1 1.4537 -1.6784 1.3985 33 1 2.1524 -0.1803 2.0858 34 1 3.4659 -2.1573 3.3903 35 1 4.0107 -0.4628 3.3695 36 1 8.0812 -2.6600 7.0190 37 1 4.2426 -0.5983 -1.0611 38 1 3.6658 -2.2882 -1.0413 39 1 1.3694 -2.7013 -0.8313 40 1 1.2181 -1.6420 -3.5778 41 1 2.4879 -2.7415 -2.9886 42 1 -0.2028 -6.7290 -3.2098 43 1 -1.2405 -2.1381 -5.0766 44 1 -2.5041 -2.5334 -3.8869 45 1 -1.1161 -1.5264 -3.4096 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700257312.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:35 Heat of formation + Delta-G solvation = 38.700469 kcal Electronic energy + Delta-G solvation = -26689.437357 eV Core-core repulsion = 22869.251371 eV Total energy + Delta-G solvation = -3820.185985 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.08687 -41.26831 -39.22534 -36.21898 -34.90263 -34.60014 -33.68025 -32.28882 -31.39687 -29.24163 -28.13240 -27.66891 -27.18284 -26.29263 -23.70764 -22.99723 -21.46807 -20.82776 -20.72629 -19.60045 -18.28654 -17.96276 -17.52364 -16.94291 -16.89881 -16.77748 -16.31658 -15.99508 -15.79734 -15.47101 -15.32036 -14.65304 -14.59260 -14.55666 -14.28587 -13.96278 -13.88500 -13.74399 -13.52702 -13.27470 -13.21882 -13.05675 -12.92307 -12.79856 -12.62746 -12.59563 -12.24161 -11.75862 -11.67350 -11.52280 -11.17073 -11.06406 -10.98047 -10.78327 -10.55908 -10.29838 -9.78433 -9.54499 -8.69881 -8.36137 -6.14980 0.55477 1.22959 1.40882 1.43848 1.44154 1.54177 1.56428 1.87293 2.08316 2.25840 2.91109 2.98042 3.19821 3.30317 3.48251 3.55299 3.61851 3.83910 3.89686 4.04622 4.21968 4.24480 4.30782 4.39059 4.41945 4.45178 4.48243 4.61263 4.64632 4.71642 4.74877 4.76853 4.82101 4.99660 5.26904 5.30226 5.32483 5.35044 5.40421 5.42725 5.67559 5.78397 5.89598 6.07011 6.18589 6.35560 7.04969 7.09472 7.09800 8.73484 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.017795 B = 0.002176 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.059456 B =12862.611995 C =13197.261915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.080 4.080 3 H 0.102 0.898 4 C 0.090 3.910 5 N -0.614 5.614 6 C 0.544 3.456 7 O -0.568 6.568 8 C -0.118 4.118 9 S -0.152 6.152 10 C -0.544 4.544 11 H 0.082 0.918 12 C 0.012 3.988 13 N -0.911 5.911 14 Si 1.001 2.999 15 H -0.256 1.256 16 H -0.274 1.274 17 H -0.273 1.273 18 C 0.073 3.927 19 C 0.098 3.902 20 H 0.138 0.862 21 N -0.661 5.661 22 C 0.137 3.863 23 C 0.279 3.721 24 N -0.578 5.578 25 C 0.189 3.811 26 N -0.348 5.348 27 N -0.367 5.367 28 C 0.085 3.915 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.271 0.729 37 H 0.069 0.931 38 H 0.053 0.947 39 H 0.343 0.657 40 H 0.134 0.866 41 H 0.066 0.934 42 H 0.236 0.764 43 H 0.096 0.904 44 H 0.093 0.907 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.007 7.153 -22.075 32.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.100 4.100 3 H 0.120 0.880 4 C -0.032 4.032 5 N -0.348 5.348 6 C 0.332 3.668 7 O -0.447 6.447 8 C -0.270 4.270 9 S 0.075 5.925 10 C -0.692 4.692 11 H 0.100 0.900 12 C -0.193 4.193 13 N -0.548 5.548 14 Si 0.822 3.178 15 H -0.180 1.180 16 H -0.199 1.199 17 H -0.198 1.198 18 C -0.051 4.051 19 C -0.013 4.013 20 H 0.156 0.844 21 N -0.291 5.291 22 C 0.006 3.994 23 C 0.002 3.998 24 N -0.307 5.307 25 C -0.113 4.113 26 N -0.177 5.177 27 N -0.157 5.157 28 C -0.055 4.055 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.120 0.880 35 H 0.125 0.875 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.162 0.838 40 H 0.151 0.849 41 H 0.085 0.915 42 H 0.252 0.748 43 H 0.114 0.886 44 H 0.112 0.888 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -22.233 6.652 -23.023 32.690 hybrid contribution 0.096 -0.513 1.797 1.871 sum -22.137 6.139 -21.226 31.277 Atomic orbital electron populations 1.21421 0.91414 1.02394 1.02307 1.22440 0.98010 0.98435 0.91096 0.88029 1.22836 0.81357 0.99231 0.99774 1.48387 1.12543 1.66996 1.06905 1.19784 0.82801 0.76250 0.87958 1.90689 1.27873 1.48405 1.77721 1.23288 1.03685 1.05982 0.93999 1.85593 1.15062 1.88724 1.03140 1.23206 1.01844 1.52977 0.91151 0.89951 1.26161 0.94324 0.93786 1.04980 1.70198 1.05774 1.43738 1.35083 0.84881 0.78955 0.78196 0.75760 1.17967 1.19936 1.19788 1.22921 1.01167 1.01299 0.79749 1.22701 0.86258 0.92415 0.99896 0.84447 1.60641 1.55544 1.10511 1.02436 1.20569 0.95156 0.90902 0.92761 1.24496 0.86131 0.94889 0.94289 1.70495 1.31297 1.01527 1.27391 1.26424 0.86383 1.02351 0.96165 1.77982 1.24322 0.88372 1.27029 1.50460 1.12093 1.06668 1.46527 1.22373 0.97930 0.82032 1.03165 0.92331 0.92888 0.90574 0.90722 0.90186 0.87970 0.87502 0.91960 0.91228 0.92899 0.83841 0.84861 0.91547 0.74769 0.88607 0.88819 0.85940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 8.86 71.98 0.64 -0.25 16 2 C -0.08 -0.83 3.57 -9.32 -0.03 -0.86 16 3 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 4 C 0.09 1.62 6.07 86.93 0.53 2.15 16 5 N -0.61 -16.34 3.32 -811.34 -2.70 -19.04 16 6 C 0.54 21.26 7.87 87.66 0.69 21.95 16 7 O -0.57 -27.65 16.19 -3.04 -0.05 -27.70 16 8 C -0.12 -4.91 5.16 71.24 0.37 -4.54 16 9 S -0.15 -8.67 20.57 -56.49 -1.16 -9.84 16 10 C -0.54 -31.47 9.50 67.95 0.65 -30.82 16 11 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 12 C 0.01 0.70 5.49 84.86 0.47 1.16 16 13 N -0.91 -56.58 13.22 21.65 0.29 -56.29 16 14 Si 1.00 43.92 29.55 68.60 2.03 45.95 16 15 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 16 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 17 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 18 C 0.07 1.47 6.32 86.73 0.55 2.02 16 19 C 0.10 0.96 3.01 46.10 0.14 1.10 16 20 H 0.14 0.53 7.89 -2.39 -0.02 0.51 16 21 N -0.66 -6.81 4.90 -489.43 -2.40 -9.21 16 22 C 0.14 1.33 5.62 85.56 0.48 1.81 16 23 C 0.28 4.61 7.49 138.23 1.04 5.64 16 24 N -0.58 -13.01 11.19 -191.78 -2.15 -15.16 16 25 C 0.19 3.83 13.03 180.77 2.36 6.19 16 26 N -0.35 -7.15 12.70 -61.25 -0.78 -7.93 16 27 N -0.37 -5.56 4.04 -359.88 -1.45 -7.01 16 28 C 0.09 0.44 11.16 127.77 1.43 1.87 16 29 H 0.06 0.59 7.37 -2.39 -0.02 0.57 16 30 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.07 1.32 7.99 -2.39 -0.02 1.30 16 33 H 0.08 1.47 7.48 -2.39 -0.02 1.45 16 34 H 0.10 3.92 8.14 -2.39 -0.02 3.90 16 35 H 0.11 4.00 7.85 -2.39 -0.02 3.98 16 36 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 37 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 38 H 0.05 1.24 7.69 -2.39 -0.02 1.23 16 39 H 0.34 5.48 8.41 -89.69 -0.75 4.73 16 40 H 0.13 0.33 7.70 -2.39 -0.02 0.31 16 41 H 0.07 0.80 7.83 -2.39 -0.02 0.78 16 42 H 0.24 3.22 8.06 -2.91 -0.02 3.20 16 43 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 44 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.12 0.08 7.72 -2.39 -0.02 0.06 16 Total: -1.00 -86.65 389.27 1.16 -85.49 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.25 Total: 13.33 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: 9.29 Total: 7.41 kcal Atomic # 7 Polarization: -105.45 SS G_CDS: -9.19 Total: -114.64 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.05 Total: -27.70 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.16 Total: -9.84 kcal Total: -86.65 1.16 -85.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700257312.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.186 kcal (2) G-P(sol) polarization free energy of solvation -86.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds