Wall clock time and date at job start Sat Apr 11 2020 05:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30831 * 125.96150 * 2 1 4 4 C 1.33242 * 109.82649 * 179.97438 * 3 2 1 5 5 C 1.50704 * 125.52737 * 179.97438 * 4 3 2 6 6 N 1.46902 * 109.46988 * 90.00328 * 5 4 3 7 7 C 1.47960 * 110.99989 * 190.00480 * 6 5 4 8 8 C 1.53943 * 86.17545 * 222.41494 * 7 6 5 9 9 C 1.53011 * 113.72963 * 138.07917 * 8 7 6 10 10 H 1.09000 * 109.46511 * 305.18540 * 9 8 7 11 11 C 1.52996 * 109.46656 * 185.19010 * 9 8 7 12 12 N 1.46499 * 109.46910 * 65.18857 * 9 8 7 13 13 C 1.34781 * 119.99381 * 204.99593 * 12 9 8 14 14 O 1.21279 * 120.00038 * 0.02562 * 13 12 9 15 15 C 1.50701 * 119.99698 * 180.02562 * 13 12 9 16 16 S 1.80990 * 109.47063 * 180.02562 * 15 13 12 17 17 C 1.76199 * 100.00193 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99997 * 0.02562 * 17 16 15 19 19 C 1.38800 * 120.00647 * 179.97438 * 17 16 15 20 20 N 1.31627 * 120.00634 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99517 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47464 * 89.99233 * 21 19 17 23 23 H 1.48507 * 109.47106 * 209.99541 * 21 19 17 24 24 H 1.48503 * 109.47284 * 329.99545 * 21 19 17 25 25 C 1.48184 * 111.07265 * 90.56422 * 6 5 4 26 26 N 1.30713 * 108.94807 * 0.26907 * 4 3 2 27 27 N 1.34430 * 125.95916 * 179.97438 * 2 1 3 28 28 H 0.96998 * 126.82102 * 0.02562 * 27 2 1 29 29 H 1.09000 * 109.47144 * 89.99666 * 1 2 3 30 30 H 1.08997 * 109.47276 * 209.99875 * 1 2 3 31 31 H 1.09002 * 109.47291 * 330.00012 * 1 2 3 32 32 H 1.08997 * 109.47226 * 330.00869 * 5 4 3 33 33 H 1.08998 * 109.47395 * 210.00490 * 5 4 3 34 34 H 1.08993 * 113.76119 * 108.09913 * 7 6 5 35 35 H 1.08994 * 113.85738 * 336.74071 * 7 6 5 36 36 H 1.08998 * 113.73601 * 269.25267 * 8 7 6 37 37 H 1.09001 * 109.47687 * 55.98982 * 11 9 8 38 38 H 1.09000 * 109.47176 * 175.98766 * 11 9 8 39 39 H 1.09000 * 109.47113 * 295.98451 * 11 9 8 40 40 H 0.96992 * 120.00061 * 24.99762 * 12 9 8 41 41 H 1.09006 * 109.47051 * 300.00445 * 15 13 12 42 42 H 1.09004 * 109.47110 * 60.00056 * 15 13 12 43 43 H 0.96999 * 120.00323 * 180.02562 * 20 19 17 44 44 H 1.09003 * 113.75510 * 23.24593 * 25 6 5 45 45 H 1.08997 * 113.83206 * 251.81472 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6887 0.0006 5 6 4.7373 1.6235 0.0002 6 7 5.1211 1.9281 1.3851 7 6 6.1168 3.0215 1.4311 8 6 6.8381 2.1808 2.5001 9 6 8.3594 2.1538 2.3391 10 1 8.6123 1.8173 1.3336 11 6 8.9638 1.1934 3.3654 12 7 8.8971 3.4995 2.5535 13 6 10.0737 3.8514 1.9981 14 8 10.6869 3.0542 1.3204 15 6 10.6272 5.2356 2.2191 16 16 12.2065 5.3996 1.3505 17 6 12.6145 7.0619 1.7686 18 1 11.9492 7.6408 2.3921 19 6 13.7915 7.6272 1.2977 20 7 14.0961 8.8692 1.6097 21 14 14.9426 6.6258 0.2200 22 1 14.5737 6.8131 -1.2062 23 1 16.3405 7.0795 0.4335 24 1 14.8289 5.1885 0.5759 25 6 6.1280 0.9620 1.8837 26 7 3.6194 -0.6169 -0.0049 27 7 2.2964 -1.0881 0.0005 28 1 2.0092 -2.0146 0.0006 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 4.4703 2.5466 -0.5142 33 1 5.5744 1.1505 -0.5132 34 1 5.7180 3.9631 1.8083 35 1 6.6848 3.1396 0.5084 36 1 6.5227 2.4031 3.5195 37 1 8.5111 0.2084 3.2520 38 1 10.0393 1.1196 3.2045 39 1 8.7717 1.5681 4.3707 40 1 8.4065 4.1372 3.0952 41 1 9.9232 5.9740 1.8351 42 1 10.7800 5.3997 3.2858 43 1 14.9184 9.2643 1.2803 44 1 6.6985 0.4750 1.0929 45 1 5.7382 0.2612 2.6219 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700534456.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:52 Heat of formation + Delta-G solvation = 49.121612 kcal Electronic energy + Delta-G solvation = -25860.972270 eV Core-core repulsion = 22041.238179 eV Total energy + Delta-G solvation = -3819.734091 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.16386 -41.44467 -40.25186 -36.46740 -34.66206 -34.49753 -33.36179 -32.77311 -30.89550 -29.86221 -28.77372 -27.83984 -27.06491 -26.20950 -23.36204 -22.30451 -21.66308 -21.26160 -20.76957 -19.78864 -18.88444 -17.89459 -17.66357 -17.10883 -17.06716 -16.52872 -16.41002 -15.98341 -15.92421 -15.65068 -15.30208 -14.94669 -14.69770 -14.39553 -14.21910 -13.91209 -13.74912 -13.65136 -13.61761 -13.34060 -13.27920 -13.02642 -12.99675 -12.77698 -12.60508 -12.51209 -12.00044 -11.84750 -11.81923 -11.68476 -11.16102 -11.12077 -11.07984 -10.91604 -10.52811 -10.51229 -10.16717 -9.83980 -8.97520 -8.50387 -6.20717 0.55115 1.00980 1.31905 1.47748 1.57199 1.61840 1.69277 1.76858 2.22657 2.27089 2.73318 2.83911 2.87938 3.08094 3.43104 3.55196 3.63647 3.84367 3.91710 4.15249 4.20064 4.23277 4.27776 4.34199 4.41211 4.47240 4.50780 4.51741 4.69870 4.71932 4.74115 4.79067 4.83854 4.99832 5.04940 5.15374 5.20948 5.29495 5.32788 5.36020 5.54116 5.71925 5.89822 6.12796 6.19923 6.53706 6.95029 7.08424 7.25859 8.61950 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.025840 B = 0.001774 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.318999 B =15776.076056 C =16078.451768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.285 3.715 3 N -0.568 5.568 4 C 0.233 3.767 5 C 0.112 3.888 6 N -0.482 5.482 7 C 0.014 3.986 8 C -0.105 4.105 9 C 0.155 3.845 10 H 0.068 0.932 11 C -0.159 4.159 12 N -0.705 5.705 13 C 0.538 3.462 14 O -0.563 6.563 15 C -0.112 4.112 16 S -0.177 6.177 17 C -0.529 4.529 18 H 0.062 0.938 19 C 0.046 3.954 20 N -0.917 5.917 21 Si 0.914 3.086 22 H -0.263 1.263 23 H -0.260 1.260 24 H -0.237 1.237 25 C 0.020 3.980 26 N -0.340 5.340 27 N -0.476 5.476 28 H 0.455 0.545 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.071 0.929 36 H 0.123 0.877 37 H 0.081 0.919 38 H 0.035 0.965 39 H 0.072 0.928 40 H 0.417 0.583 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.276 0.724 44 H 0.075 0.925 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.264 -21.532 0.728 37.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.007 3.993 3 N -0.298 5.298 4 C -0.051 4.051 5 C -0.018 4.018 6 N -0.205 5.205 7 C -0.115 4.115 8 C -0.125 4.125 9 C 0.050 3.950 10 H 0.086 0.914 11 C -0.217 4.217 12 N -0.358 5.358 13 C 0.323 3.677 14 O -0.442 6.442 15 C -0.263 4.263 16 S 0.049 5.951 17 C -0.676 4.676 18 H 0.081 0.919 19 C -0.159 4.159 20 N -0.555 5.555 21 Si 0.736 3.264 22 H -0.187 1.187 23 H -0.184 1.184 24 H -0.161 1.161 25 C -0.109 4.109 26 N -0.170 5.170 27 N -0.197 5.197 28 H 0.303 0.697 29 H 0.127 0.873 30 H 0.130 0.870 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.090 0.910 34 H 0.123 0.877 35 H 0.090 0.910 36 H 0.141 0.859 37 H 0.100 0.900 38 H 0.055 0.945 39 H 0.091 0.909 40 H 0.254 0.746 41 H 0.132 0.868 42 H 0.131 0.869 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -29.221 -22.663 -0.089 36.980 hybrid contribution 0.352 0.692 0.030 0.777 sum -28.869 -21.970 -0.059 36.279 Atomic orbital electron populations 1.20636 0.80208 1.06484 1.06021 1.25262 0.98274 0.82055 0.93696 1.70351 1.01768 1.31214 1.26488 1.24131 0.93656 0.89982 0.97296 1.20886 0.91424 0.96866 0.92652 1.68497 1.29261 1.05480 1.17252 1.23990 0.91987 0.96723 0.98775 1.23186 0.91271 0.96648 1.01346 1.20987 0.92278 0.81991 0.99709 0.91416 1.22115 1.00275 0.99862 0.99447 1.45766 1.21188 1.15755 1.53128 1.19907 0.81291 0.87905 0.78562 1.90688 1.59777 1.53366 1.40342 1.23282 0.99593 0.97877 1.05499 1.84710 1.24320 1.16926 1.69112 1.22477 1.10484 0.97428 1.37259 0.91930 1.25548 0.98372 0.95513 0.96486 1.70014 1.25941 1.14106 1.45426 0.85876 0.79239 0.81339 0.79967 1.18740 1.18389 1.16120 1.24042 0.91913 0.95243 0.99726 1.77899 0.98732 1.12525 1.27878 1.47924 1.03345 1.10987 1.57396 0.69683 0.87312 0.86970 0.88299 0.87901 0.90991 0.87718 0.91038 0.85944 0.90044 0.94545 0.90943 0.74625 0.86800 0.86919 0.91408 0.90726 0.89027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.22 10.51 71.24 0.75 0.53 16 2 C 0.28 3.90 8.24 138.23 1.14 5.04 16 3 N -0.57 -12.17 11.19 -179.72 -2.01 -14.18 16 4 C 0.23 5.12 7.70 138.63 1.07 6.19 16 5 C 0.11 2.16 5.43 85.56 0.46 2.62 16 6 N -0.48 -8.68 6.14 -911.77 -5.60 -14.28 16 7 C 0.01 0.21 7.39 86.41 0.64 0.85 16 8 C -0.11 -1.50 3.35 -10.14 -0.03 -1.53 16 9 C 0.16 3.01 2.29 44.99 0.10 3.11 16 10 H 0.07 1.65 7.49 -2.39 -0.02 1.63 16 11 C -0.16 -2.97 9.46 71.98 0.68 -2.29 16 12 N -0.71 -15.42 4.95 -442.52 -2.19 -17.61 16 13 C 0.54 17.78 7.81 87.66 0.68 18.47 16 14 O -0.56 -23.52 15.52 -3.03 -0.05 -23.57 16 15 C -0.11 -4.11 6.16 71.24 0.44 -3.67 16 16 S -0.18 -8.92 18.55 -56.49 -1.05 -9.97 16 17 C -0.53 -30.79 10.04 67.95 0.68 -30.10 16 18 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 19 C 0.05 2.72 5.50 84.86 0.47 3.18 16 20 N -0.92 -55.92 13.97 21.65 0.30 -55.62 16 21 Si 0.91 45.17 27.74 68.60 1.90 47.08 16 22 H -0.26 -12.68 7.11 99.48 0.71 -11.97 16 23 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 24 H -0.24 -11.72 6.74 99.48 0.67 -11.05 16 25 C 0.02 0.32 7.35 86.37 0.63 0.95 16 26 N -0.34 -7.13 12.80 -51.33 -0.66 -7.79 16 27 N -0.48 -6.33 7.45 -50.71 -0.38 -6.70 16 28 H 0.45 2.40 8.96 -213.10 -1.91 0.49 16 29 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 30 H 0.11 -0.32 8.14 -2.39 -0.02 -0.34 16 31 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.10 1.89 8.08 -2.39 -0.02 1.87 16 33 H 0.07 1.31 7.39 -2.39 -0.02 1.29 16 34 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.07 1.22 7.88 -2.39 -0.02 1.20 16 36 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.08 1.23 7.99 -2.39 -0.02 1.21 16 38 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.42 6.49 8.60 -92.71 -0.80 5.69 16 41 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 42 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 43 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 44 H 0.07 1.23 7.38 -2.39 -0.02 1.22 16 45 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -82.80 391.99 -3.73 -86.54 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -1.72 Total: 12.77 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 7.71 Total: 3.34 kcal Atomic # 7 Polarization: -105.65 SS G_CDS: -10.53 Total: -116.19 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.05 Total: -23.57 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.90 Total: 47.08 kcal Atomic # 16 Polarization: -8.92 SS G_CDS: -1.05 Total: -9.97 kcal Total: -82.80 -3.73 -86.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700534456.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.658 kcal (2) G-P(sol) polarization free energy of solvation -82.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds