Wall clock time and date at job start Sat Apr 11 2020 05:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30834 * 125.96516 * 2 1 4 4 C 1.33233 * 109.82996 * 179.73851 * 3 2 1 5 5 C 1.50702 * 125.52643 * 179.97438 * 4 3 2 6 6 N 1.46899 * 109.47156 * 89.99785 * 5 4 3 7 7 C 1.46902 * 111.00014 * 180.02562 * 6 5 4 8 8 C 1.53784 * 113.61258 * 254.13501 * 7 6 5 9 9 C 1.53954 * 87.01774 * 220.04624 * 8 7 6 10 10 C 1.52995 * 113.53932 * 270.80723 * 9 8 7 11 11 N 1.46501 * 109.47571 * 272.50040 * 10 9 8 12 12 C 1.34781 * 120.00078 * 179.97438 * 11 10 9 13 13 O 1.21278 * 120.00086 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.99535 * 179.97438 * 12 11 10 15 15 S 1.81003 * 109.46645 * 179.97438 * 14 12 11 16 16 C 1.76203 * 99.99811 * 180.02562 * 15 14 12 17 17 H 1.08003 * 119.99956 * 359.97438 * 16 15 14 18 18 C 1.38799 * 119.99872 * 179.97438 * 16 15 14 19 19 N 1.31629 * 119.99948 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 120.00061 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47019 * 89.99671 * 20 18 16 22 22 H 1.48500 * 109.47206 * 209.99765 * 20 18 16 23 23 H 1.48496 * 109.47113 * 329.99877 * 20 18 16 24 24 C 1.53776 * 87.11534 * 25.36429 * 9 8 7 25 25 N 1.30708 * 108.95078 * 359.97438 * 4 3 2 26 26 N 1.34429 * 125.95883 * 179.69024 * 2 1 3 27 27 H 0.97003 * 126.82753 * 0.26347 * 26 2 1 28 28 H 1.09005 * 109.46871 * 90.02403 * 1 2 3 29 29 H 1.08991 * 109.47686 * 210.02392 * 1 2 3 30 30 H 1.09002 * 109.47441 * 330.02801 * 1 2 3 31 31 H 1.09005 * 109.47564 * 209.99521 * 5 4 3 32 32 H 1.08994 * 109.47174 * 329.99692 * 5 4 3 33 33 H 1.00897 * 111.00692 * 56.04690 * 6 5 4 34 34 H 1.08998 * 112.85406 * 25.32953 * 7 6 5 35 35 H 1.09006 * 113.61372 * 334.56460 * 8 7 6 36 36 H 1.08996 * 113.61788 * 105.46901 * 8 7 6 37 37 H 1.09007 * 113.74153 * 139.94484 * 9 8 7 38 38 H 1.09005 * 109.47181 * 32.50040 * 10 9 8 39 39 H 1.09001 * 109.47296 * 152.49216 * 10 9 8 40 40 H 0.97004 * 119.99589 * 359.97438 * 11 10 9 41 41 H 1.08995 * 109.47196 * 299.99488 * 14 12 11 42 42 H 1.08998 * 109.47102 * 60.00279 * 14 12 11 43 43 H 0.97000 * 120.00136 * 180.02562 * 19 18 16 44 44 H 1.08999 * 113.61545 * 220.09437 * 24 9 8 45 45 H 1.08994 * 113.69387 * 89.19220 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5552 0.6887 0.0057 5 6 4.7372 1.6235 0.0070 6 7 5.1163 1.9316 1.3924 7 6 6.2676 2.8431 1.4329 8 6 7.5822 2.1573 1.8411 9 6 7.8895 3.4187 2.6685 10 6 8.6364 4.4981 1.8826 11 7 10.0788 4.2581 1.9728 12 6 10.9403 5.0885 1.3524 13 8 10.5214 6.0342 0.7191 14 6 12.4241 4.8418 1.4458 15 16 13.3075 6.1180 0.5146 16 6 14.9695 5.5995 0.7861 17 1 15.1708 4.7227 1.3838 18 6 16.0199 6.3179 0.2320 19 7 17.2614 5.9309 0.4353 20 14 15.6716 7.8348 -0.8011 21 1 15.6406 9.0337 0.0747 22 1 16.7387 7.9946 -1.8214 23 1 14.3587 7.6821 -1.4778 24 6 6.3706 3.6480 2.7393 25 7 3.6194 -0.6168 0.0100 26 7 2.2963 -1.0881 0.0059 27 1 2.0093 -2.0147 0.0073 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3634 -0.8897 0.5141 30 1 -0.3634 0.8902 0.5134 31 1 5.5762 1.1492 -0.5023 32 1 4.4720 2.5453 -0.5106 33 1 5.3046 1.0875 1.9121 34 1 6.3549 3.4550 0.5351 35 1 7.4381 1.2624 2.4464 36 1 8.2697 2.0011 1.0098 37 1 8.3449 3.2085 3.6364 38 1 8.3275 4.4661 0.8377 39 1 8.4042 5.4778 2.3001 40 1 10.4138 3.5015 2.4791 41 1 12.7328 4.8748 2.4906 42 1 12.6564 3.8619 1.0289 43 1 17.9956 6.4332 0.0484 44 1 6.0814 4.6934 2.6319 45 1 5.8935 3.1619 3.5902 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707286416.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:59 Heat of formation + Delta-G solvation = 63.569777 kcal Electronic energy + Delta-G solvation = -25056.676664 eV Core-core repulsion = 21237.569092 eV Total energy + Delta-G solvation = -3819.107571 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.60319 -40.14178 -38.85149 -35.71501 -34.09423 -32.90080 -32.69007 -32.42472 -29.92978 -28.78600 -27.34861 -25.98686 -25.75773 -25.45222 -22.84655 -21.88538 -20.93835 -20.45615 -19.28588 -18.36300 -17.75785 -16.80724 -16.35970 -16.22393 -16.00492 -15.55712 -15.17356 -15.13277 -14.92267 -14.31338 -14.13276 -13.94380 -13.78574 -13.45380 -13.37012 -13.29321 -12.97614 -12.78280 -12.66781 -12.49466 -12.34559 -12.19764 -11.75123 -11.40472 -11.23900 -10.99427 -10.75343 -10.66533 -10.57895 -10.48380 -10.45512 -9.98154 -9.84116 -9.49029 -9.00033 -8.92047 -8.77900 -8.48337 -6.90141 -6.27669 -3.99252 1.07603 2.11833 2.34805 2.78793 3.00838 3.32289 3.35837 3.42659 3.52114 3.67156 3.86276 4.09870 4.20121 4.27875 4.34520 4.38178 4.46317 4.59174 4.73389 4.77428 4.79841 4.99755 5.06589 5.11514 5.19052 5.21549 5.25827 5.32835 5.40425 5.46199 5.66668 5.73163 5.74496 5.76694 5.78732 5.86097 5.92778 6.02352 6.04216 6.52979 6.57201 6.60019 6.91820 7.63978 7.64775 7.95396 8.42844 8.52381 9.18653 10.81588 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.028555 B = 0.001472 C = 0.001459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.337692 B =19011.498193 C =19191.621677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.281 3.719 3 N -0.525 5.525 4 C 0.236 3.764 5 C 0.151 3.849 6 N -0.670 5.670 7 C 0.067 3.933 8 C -0.165 4.165 9 C -0.123 4.123 10 C 0.139 3.861 11 N -0.736 5.736 12 C 0.530 3.470 13 O -0.520 6.520 14 C -0.124 4.124 15 S -0.142 6.142 16 C -0.522 4.522 17 H 0.088 0.912 18 C 0.096 3.904 19 N -0.881 5.881 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C -0.115 4.115 25 N -0.314 5.314 26 N -0.484 5.484 27 H 0.440 0.560 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.345 0.655 34 H 0.103 0.897 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.399 0.601 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.271 0.729 44 H 0.075 0.925 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.351 -15.872 3.150 37.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.003 3.997 3 N -0.254 5.254 4 C -0.047 4.047 5 C 0.020 3.980 6 N -0.301 5.301 7 C -0.043 4.043 8 C -0.204 4.204 9 C -0.142 4.142 10 C 0.015 3.985 11 N -0.390 5.390 12 C 0.315 3.685 13 O -0.395 6.395 14 C -0.275 4.275 15 S 0.084 5.916 16 C -0.669 4.669 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.517 5.517 20 Si 0.681 3.319 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 C -0.154 4.154 25 N -0.144 5.144 26 N -0.202 5.202 27 H 0.285 0.715 28 H 0.111 0.889 29 H 0.102 0.898 30 H 0.118 0.882 31 H 0.076 0.924 32 H 0.120 0.880 33 H 0.164 0.836 34 H 0.121 0.879 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.233 0.767 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.080 0.920 44 H 0.093 0.907 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -34.758 -13.764 2.102 37.444 hybrid contribution 1.189 -2.269 0.365 2.587 sum -33.570 -16.033 2.467 37.284 Atomic orbital electron populations 1.20410 0.83539 1.05143 1.04650 1.24484 0.96748 0.82791 0.95724 1.70391 1.01358 1.29261 1.24394 1.24116 0.93475 0.89702 0.97390 1.20181 0.90078 0.96318 0.91424 1.60369 1.38630 1.19507 1.11598 1.23157 0.86965 0.94931 0.99236 1.23793 0.98788 0.97392 1.00468 1.22466 0.96574 0.95627 0.99575 1.21094 0.79694 0.97677 1.00054 1.45954 1.06133 1.31544 1.55364 1.20273 0.88072 0.81897 0.78212 1.90699 1.79216 1.29294 1.40295 1.23280 0.93366 1.05274 1.05564 1.84788 1.03306 1.36554 1.66933 1.22327 0.88746 1.17150 1.38705 0.89410 1.24708 0.94034 0.97332 0.95184 1.69939 0.98320 1.39784 1.43705 0.86734 0.80510 0.83357 0.81252 1.19193 1.19950 1.15919 1.23024 0.93556 1.00928 0.97844 1.78009 0.96917 1.12510 1.26925 1.47991 1.04276 1.10096 1.57847 0.71479 0.88913 0.89850 0.88161 0.92374 0.87956 0.83620 0.87864 0.89732 0.90871 0.89525 0.91483 0.91192 0.76680 0.88516 0.88514 0.91956 0.90654 0.89283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.15 10.51 36.00 0.38 0.22 16 2 C 0.28 1.87 8.24 -155.69 -1.28 0.59 16 3 N -0.52 -5.24 11.19 -8.16 -0.09 -5.33 16 4 C 0.24 2.34 7.65 -156.86 -1.20 1.14 16 5 C 0.15 1.26 6.16 -4.98 -0.03 1.23 16 6 N -0.67 -5.34 6.60 -107.13 -0.71 -6.05 16 7 C 0.07 0.50 3.81 -66.89 -0.25 0.24 16 8 C -0.17 -1.18 7.25 -25.83 -0.19 -1.36 16 9 C -0.12 -0.94 3.95 -89.72 -0.35 -1.29 16 10 C 0.14 1.49 5.35 -4.04 -0.02 1.47 16 11 N -0.74 -9.22 5.56 -60.29 -0.33 -9.55 16 12 C 0.53 9.42 7.85 -10.98 -0.09 9.33 16 13 O -0.52 -11.30 15.86 5.56 0.09 -11.21 16 14 C -0.12 -2.41 6.16 36.01 0.22 -2.19 16 15 S -0.14 -3.63 18.55 -107.50 -1.99 -5.63 16 16 C -0.52 -15.13 10.04 30.94 0.31 -14.82 16 17 H 0.09 2.65 8.03 -52.48 -0.42 2.23 16 18 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 19 N -0.88 -26.71 13.97 55.49 0.78 -25.93 16 20 Si 0.86 21.92 27.74 -169.99 -4.72 17.21 16 21 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 23 H -0.24 -6.02 6.74 56.52 0.38 -5.63 16 24 C -0.11 -0.84 7.47 -25.92 -0.19 -1.03 16 25 N -0.31 -3.02 12.80 32.42 0.41 -2.60 16 26 N -0.48 -3.06 7.45 32.62 0.24 -2.82 16 27 H 0.44 1.15 8.96 -182.33 -1.63 -0.48 16 28 H 0.09 0.08 8.14 -51.93 -0.42 -0.35 16 29 H 0.08 -0.03 8.14 -51.93 -0.42 -0.46 16 30 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.10 0.84 8.13 -51.93 -0.42 0.41 16 33 H 0.34 2.67 8.20 -39.29 -0.32 2.34 16 34 H 0.10 0.80 7.46 -51.93 -0.39 0.42 16 35 H 0.08 0.54 7.83 -51.93 -0.41 0.14 16 36 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 37 H 0.09 0.62 8.14 -51.92 -0.42 0.20 16 38 H 0.07 0.78 7.39 -51.93 -0.38 0.39 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.40 3.91 8.47 -40.82 -0.35 3.56 16 41 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 42 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 43 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 44 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 45 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 392.85 15.07 5.92 5.92 Total: -1.00 -37.66 392.85 -11.32 -48.99 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -8.13 Total: 0.75 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -2.80 Total: -3.74 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: 0.30 Total: -52.28 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.09 Total: -11.21 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.72 Total: 17.21 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.66 -11.32 -48.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707286416.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.556 kcal (2) G-P(sol) polarization free energy of solvation -37.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds