Wall clock time and date at job start Sat Apr 11 2020 05:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30834 * 125.96516 * 2 1 4 4 C 1.33233 * 109.82996 * 179.73851 * 3 2 1 5 5 C 1.50702 * 125.52643 * 179.97438 * 4 3 2 6 6 N 1.46899 * 109.47156 * 89.99785 * 5 4 3 7 7 C 1.46902 * 111.00014 * 180.02562 * 6 5 4 8 8 C 1.53784 * 113.61258 * 254.13501 * 7 6 5 9 9 C 1.53954 * 87.01774 * 220.04624 * 8 7 6 10 10 C 1.52995 * 113.53932 * 270.80723 * 9 8 7 11 11 N 1.46501 * 109.47571 * 272.50040 * 10 9 8 12 12 C 1.34781 * 120.00078 * 179.97438 * 11 10 9 13 13 O 1.21278 * 120.00086 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.99535 * 179.97438 * 12 11 10 15 15 S 1.81003 * 109.46645 * 179.97438 * 14 12 11 16 16 C 1.76203 * 99.99811 * 180.02562 * 15 14 12 17 17 H 1.08003 * 119.99956 * 359.97438 * 16 15 14 18 18 C 1.38799 * 119.99872 * 179.97438 * 16 15 14 19 19 N 1.31629 * 119.99948 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 120.00061 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47019 * 89.99671 * 20 18 16 22 22 H 1.48500 * 109.47206 * 209.99765 * 20 18 16 23 23 H 1.48496 * 109.47113 * 329.99877 * 20 18 16 24 24 C 1.53776 * 87.11534 * 25.36429 * 9 8 7 25 25 N 1.30708 * 108.95078 * 359.97438 * 4 3 2 26 26 N 1.34429 * 125.95883 * 179.69024 * 2 1 3 27 27 H 0.97003 * 126.82753 * 0.26347 * 26 2 1 28 28 H 1.09005 * 109.46871 * 90.02403 * 1 2 3 29 29 H 1.08991 * 109.47686 * 210.02392 * 1 2 3 30 30 H 1.09002 * 109.47441 * 330.02801 * 1 2 3 31 31 H 1.09005 * 109.47564 * 209.99521 * 5 4 3 32 32 H 1.08994 * 109.47174 * 329.99692 * 5 4 3 33 33 H 1.00897 * 111.00692 * 56.04690 * 6 5 4 34 34 H 1.08998 * 112.85406 * 25.32953 * 7 6 5 35 35 H 1.09006 * 113.61372 * 334.56460 * 8 7 6 36 36 H 1.08996 * 113.61788 * 105.46901 * 8 7 6 37 37 H 1.09007 * 113.74153 * 139.94484 * 9 8 7 38 38 H 1.09005 * 109.47181 * 32.50040 * 10 9 8 39 39 H 1.09001 * 109.47296 * 152.49216 * 10 9 8 40 40 H 0.97004 * 119.99589 * 359.97438 * 11 10 9 41 41 H 1.08995 * 109.47196 * 299.99488 * 14 12 11 42 42 H 1.08998 * 109.47102 * 60.00279 * 14 12 11 43 43 H 0.97000 * 120.00136 * 180.02562 * 19 18 16 44 44 H 1.08999 * 113.61545 * 220.09437 * 24 9 8 45 45 H 1.08994 * 113.69387 * 89.19220 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5552 0.6887 0.0057 5 6 4.7372 1.6235 0.0070 6 7 5.1163 1.9316 1.3924 7 6 6.2676 2.8431 1.4329 8 6 7.5822 2.1573 1.8411 9 6 7.8895 3.4187 2.6685 10 6 8.6364 4.4981 1.8826 11 7 10.0788 4.2581 1.9728 12 6 10.9403 5.0885 1.3524 13 8 10.5214 6.0342 0.7191 14 6 12.4241 4.8418 1.4458 15 16 13.3075 6.1180 0.5146 16 6 14.9695 5.5995 0.7861 17 1 15.1708 4.7227 1.3838 18 6 16.0199 6.3179 0.2320 19 7 17.2614 5.9309 0.4353 20 14 15.6716 7.8348 -0.8011 21 1 15.6406 9.0337 0.0747 22 1 16.7387 7.9946 -1.8214 23 1 14.3587 7.6821 -1.4778 24 6 6.3706 3.6480 2.7393 25 7 3.6194 -0.6168 0.0100 26 7 2.2963 -1.0881 0.0059 27 1 2.0093 -2.0147 0.0073 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3634 -0.8897 0.5141 30 1 -0.3634 0.8902 0.5134 31 1 5.5762 1.1492 -0.5023 32 1 4.4720 2.5453 -0.5106 33 1 5.3046 1.0875 1.9121 34 1 6.3549 3.4550 0.5351 35 1 7.4381 1.2624 2.4464 36 1 8.2697 2.0011 1.0098 37 1 8.3449 3.2085 3.6364 38 1 8.3275 4.4661 0.8377 39 1 8.4042 5.4778 2.3001 40 1 10.4138 3.5015 2.4791 41 1 12.7328 4.8748 2.4906 42 1 12.6564 3.8619 1.0289 43 1 17.9956 6.4332 0.0484 44 1 6.0814 4.6934 2.6319 45 1 5.8935 3.1619 3.5902 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707286416.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:59 Heat of formation + Delta-G solvation = 34.672410 kcal Electronic energy + Delta-G solvation = -25057.929747 eV Core-core repulsion = 21237.569092 eV Total energy + Delta-G solvation = -3820.360655 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.16838 -41.03099 -40.01405 -36.46833 -35.13179 -34.66769 -33.39447 -33.32737 -31.31487 -29.24698 -28.20430 -27.80469 -26.58861 -26.41402 -23.53357 -22.39501 -21.79915 -21.54524 -20.22515 -19.58513 -18.88173 -17.78857 -17.60816 -17.12387 -16.91776 -16.79628 -16.61255 -16.15771 -15.74525 -15.57450 -15.10812 -14.90648 -14.80559 -14.58801 -14.52089 -13.94568 -13.66859 -13.62234 -13.49280 -13.34107 -13.23497 -13.12278 -13.00934 -12.81287 -12.69516 -12.60793 -12.07548 -11.84613 -11.39189 -11.28319 -11.16780 -11.11658 -11.09357 -10.93883 -10.54532 -10.53018 -10.09655 -9.38669 -8.99203 -8.51357 -6.22137 0.52757 0.99821 1.31860 1.47485 1.56745 1.58212 1.68596 1.75346 2.23473 2.27822 2.72586 2.87076 2.93993 3.30712 3.53992 3.56791 3.70647 3.76143 3.88746 3.95104 4.01841 4.23826 4.30961 4.40904 4.47030 4.47987 4.51957 4.70052 4.72025 4.78914 4.84447 4.90515 5.04288 5.05868 5.13452 5.19438 5.21768 5.31321 5.35783 5.48659 5.70897 5.99240 6.11500 6.17504 6.32935 6.49534 6.94009 7.07118 7.21465 8.61065 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.028555 B = 0.001472 C = 0.001459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.337692 B =19011.498193 C =19191.621677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.285 3.715 3 N -0.565 5.565 4 C 0.224 3.776 5 C 0.154 3.846 6 N -0.671 5.671 7 C 0.066 3.934 8 C -0.157 4.157 9 C -0.112 4.112 10 C 0.138 3.862 11 N -0.710 5.710 12 C 0.533 3.467 13 O -0.565 6.565 14 C -0.112 4.112 15 S -0.177 6.177 16 C -0.530 4.530 17 H 0.062 0.938 18 C 0.047 3.953 19 N -0.917 5.917 20 Si 0.914 3.086 21 H -0.262 1.262 22 H -0.259 1.259 23 H -0.237 1.237 24 C -0.109 4.109 25 N -0.341 5.341 26 N -0.475 5.475 27 H 0.455 0.545 28 H 0.108 0.892 29 H 0.112 0.888 30 H 0.099 0.901 31 H 0.060 0.940 32 H 0.098 0.902 33 H 0.346 0.654 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.065 0.935 37 H 0.101 0.899 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.416 0.584 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.277 0.723 44 H 0.071 0.929 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.549 -16.848 3.709 40.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.007 3.993 3 N -0.295 5.295 4 C -0.059 4.059 5 C 0.023 3.977 6 N -0.302 5.302 7 C -0.044 4.044 8 C -0.196 4.196 9 C -0.132 4.132 10 C 0.015 3.985 11 N -0.363 5.363 12 C 0.319 3.681 13 O -0.443 6.443 14 C -0.263 4.263 15 S 0.050 5.950 16 C -0.677 4.677 17 H 0.080 0.920 18 C -0.158 4.158 19 N -0.555 5.555 20 Si 0.736 3.264 21 H -0.187 1.187 22 H -0.183 1.183 23 H -0.161 1.161 24 C -0.148 4.148 25 N -0.172 5.172 26 N -0.195 5.195 27 H 0.304 0.696 28 H 0.126 0.874 29 H 0.131 0.869 30 H 0.117 0.883 31 H 0.078 0.922 32 H 0.116 0.884 33 H 0.166 0.834 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.084 0.916 37 H 0.120 0.880 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.253 0.747 41 H 0.132 0.868 42 H 0.131 0.869 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -36.981 -14.814 2.694 39.929 hybrid contribution 1.719 -2.122 0.274 2.745 sum -35.262 -16.936 2.968 39.230 Atomic orbital electron populations 1.20641 0.80262 1.06513 1.06027 1.25272 0.98288 0.82050 0.93654 1.70379 1.01793 1.31113 1.26241 1.24319 0.93945 0.90003 0.97662 1.20143 0.89937 0.96000 0.91621 1.60358 1.38810 1.19643 1.11430 1.23161 0.87127 0.94951 0.99194 1.23757 0.98113 0.97537 1.00169 1.22324 0.96443 0.94717 0.99695 1.21213 0.78406 0.98654 1.00272 1.45735 1.06458 1.30610 1.53523 1.19955 0.87706 0.82053 0.78400 1.90690 1.79597 1.31387 1.42635 1.23277 0.93991 1.03521 1.05462 1.84719 1.01875 1.39662 1.68778 1.22473 0.90903 1.16314 1.38050 0.91958 1.25549 0.93892 1.00097 0.96306 1.70015 0.99262 1.41289 1.44949 0.85872 0.80546 0.79907 0.80081 1.18664 1.18308 1.16129 1.23002 0.93085 1.00786 0.97929 1.77906 0.98854 1.12544 1.27861 1.47934 1.03304 1.11027 1.57272 0.69640 0.87352 0.86948 0.88267 0.92176 0.88359 0.83442 0.88481 0.88442 0.91646 0.88042 0.92198 0.91896 0.74654 0.86804 0.86858 0.91370 0.91006 0.88486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.13 10.51 71.23 0.75 0.62 16 2 C 0.29 3.46 8.24 138.22 1.14 4.60 16 3 N -0.56 -11.11 11.19 -179.74 -2.01 -13.12 16 4 C 0.22 4.42 7.65 138.64 1.06 5.48 16 5 C 0.15 2.58 6.16 85.56 0.53 3.10 16 6 N -0.67 -10.21 6.60 -492.84 -3.25 -13.46 16 7 C 0.07 0.90 3.81 45.44 0.17 1.07 16 8 C -0.16 -1.92 7.25 31.18 0.23 -1.69 16 9 C -0.11 -1.45 3.95 -10.21 -0.04 -1.49 16 10 C 0.14 2.75 5.35 86.38 0.46 3.21 16 11 N -0.71 -16.27 5.56 -463.05 -2.57 -18.84 16 12 C 0.53 18.25 7.85 87.66 0.69 18.93 16 13 O -0.56 -24.24 15.86 -3.02 -0.05 -24.29 16 14 C -0.11 -4.19 6.16 71.24 0.44 -3.75 16 15 S -0.18 -9.00 18.55 -56.49 -1.05 -10.04 16 16 C -0.53 -31.02 10.04 67.95 0.68 -30.33 16 17 H 0.06 3.84 8.03 -2.91 -0.02 3.81 16 18 C 0.05 2.77 5.50 84.86 0.47 3.24 16 19 N -0.92 -56.08 13.97 21.65 0.30 -55.77 16 20 Si 0.91 45.28 27.74 68.60 1.90 47.18 16 21 H -0.26 -12.66 7.11 99.48 0.71 -11.95 16 22 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 23 H -0.24 -11.76 6.74 99.48 0.67 -11.09 16 24 C -0.11 -1.40 7.47 31.12 0.23 -1.17 16 25 N -0.34 -6.43 12.80 -51.34 -0.66 -7.08 16 26 N -0.48 -5.48 7.45 -50.71 -0.38 -5.86 16 27 H 0.45 1.68 8.96 -213.09 -1.91 -0.23 16 28 H 0.11 -0.09 8.14 -2.38 -0.02 -0.11 16 29 H 0.11 -0.45 8.14 -2.39 -0.02 -0.47 16 30 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.10 1.66 8.13 -2.39 -0.02 1.64 16 33 H 0.35 5.01 8.20 -89.70 -0.74 4.27 16 34 H 0.10 1.47 7.46 -2.39 -0.02 1.45 16 35 H 0.10 0.99 7.83 -2.38 -0.02 0.97 16 36 H 0.06 0.93 8.10 -2.39 -0.02 0.92 16 37 H 0.10 1.09 8.14 -2.38 -0.02 1.08 16 38 H 0.06 1.33 7.39 -2.38 -0.02 1.31 16 39 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.42 6.88 8.47 -92.71 -0.79 6.09 16 41 H 0.11 3.90 8.14 -2.40 -0.02 3.89 16 42 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 43 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 44 H 0.07 0.99 8.10 -2.39 -0.02 0.97 16 45 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -82.43 392.85 -3.39 -85.82 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -2.43 Total: 13.66 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 6.80 Total: 1.82 kcal Atomic # 7 Polarization: -105.57 SS G_CDS: -8.57 Total: -114.14 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.05 Total: -24.29 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.90 Total: 47.18 kcal Atomic # 16 Polarization: -9.00 SS G_CDS: -1.05 Total: -10.04 kcal Total: -82.43 -3.39 -85.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707286416.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.488 kcal (2) G-P(sol) polarization free energy of solvation -82.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds