Wall clock time and date at job start Sat Apr 11 2020 05:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.47366 * 2 1 4 4 C 1.53002 * 109.46909 * 240.00528 * 2 1 3 5 5 N 1.46501 * 109.47220 * 185.00073 * 4 2 1 6 6 C 1.34772 * 120.00155 * 180.02562 * 5 4 2 7 7 O 1.21286 * 119.99802 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00062 * 180.02562 * 6 5 4 9 9 S 1.81002 * 109.47062 * 179.97438 * 8 6 5 10 10 C 1.76204 * 100.00009 * 179.97438 * 9 8 6 11 11 H 1.07998 * 119.99972 * 359.97438 * 10 9 8 12 12 C 1.38797 * 119.99939 * 179.97438 * 10 9 8 13 13 N 1.31635 * 119.99907 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 120.00043 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.47236 * 89.99896 * 14 12 10 16 16 H 1.48500 * 109.46996 * 209.99878 * 14 12 10 17 17 H 1.48503 * 109.47220 * 329.99437 * 14 12 10 18 18 N 1.46894 * 109.46856 * 120.00510 * 2 1 3 19 19 C 1.46898 * 111.00199 * 274.99611 * 18 2 1 20 20 C 1.50695 * 109.47232 * 180.02562 * 19 18 2 21 21 N 1.30834 * 125.96243 * 274.71730 * 20 19 18 22 22 C 1.33236 * 109.83163 * 180.26622 * 21 20 19 23 23 C 1.50707 * 125.52523 * 179.97438 * 22 21 20 24 24 C 1.53005 * 117.49694 * 188.77185 * 23 22 21 25 25 C 1.53003 * 117.49865 * 120.11353 * 23 22 21 26 26 N 1.30706 * 108.94932 * 359.97438 * 22 21 20 27 27 N 1.34434 * 125.96559 * 95.02509 * 20 19 18 28 28 H 0.96997 * 126.81580 * 359.69561 * 27 20 19 29 29 H 1.08998 * 109.46868 * 299.99665 * 1 2 3 30 30 H 1.09004 * 109.46775 * 59.99440 * 1 2 3 31 31 H 1.08992 * 109.47340 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46863 * 304.99977 * 4 2 1 33 33 H 1.09000 * 109.47242 * 64.99788 * 4 2 1 34 34 H 0.96996 * 119.99394 * 0.02562 * 5 4 2 35 35 H 1.08997 * 109.47072 * 300.00061 * 8 6 5 36 36 H 1.08995 * 109.47062 * 60.00289 * 8 6 5 37 37 H 0.96995 * 119.99962 * 180.02562 * 13 12 10 38 38 H 1.00909 * 110.99586 * 151.04568 * 18 2 1 39 39 H 1.08992 * 109.46980 * 60.00162 * 19 18 2 40 40 H 1.09005 * 109.47129 * 300.00379 * 19 18 2 41 41 H 1.08997 * 115.55141 * 334.44233 * 23 22 21 42 42 H 1.08999 * 117.49589 * 0.02562 * 24 23 22 43 43 H 1.08998 * 117.49385 * 145.01914 * 24 23 22 44 44 H 1.08996 * 117.49800 * 214.98240 * 25 23 22 45 45 H 1.09001 * 117.49545 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8263 -1.1907 6 6 4.1731 -1.4281 -2.1914 7 8 3.5700 -1.8822 -3.1406 8 6 5.6749 -1.5368 -2.1308 9 16 6.2782 -2.3898 -3.6089 10 6 8.0100 -2.3770 -3.2841 11 1 8.3863 -1.9239 -2.3789 12 6 8.8905 -2.9492 -4.1917 13 7 10.1843 -2.9391 -3.9494 14 14 8.2397 -3.7322 -5.7578 15 1 8.1828 -2.7115 -6.8349 16 1 9.1416 -4.8375 -6.1704 17 1 6.8773 -4.2702 -5.5131 18 7 2.0197 -0.6926 1.1993 19 6 2.0825 0.2224 2.3469 20 6 2.5885 -0.5218 3.5556 21 7 1.8618 -1.2292 4.3822 22 6 2.6348 -1.7419 5.3385 23 6 2.1619 -2.6132 6.4737 24 6 3.1652 -2.9338 7.5835 25 6 2.7587 -4.0179 6.5821 26 7 3.8698 -1.3668 5.1327 27 7 3.8645 -0.5701 3.9761 28 1 4.6295 -0.1407 3.5623 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6054 -1.7197 -1.2953 33 1 1.7516 -0.1582 -2.1370 34 1 3.9823 -0.4628 -0.4317 35 1 6.1098 -0.5385 -2.0840 36 1 5.9629 -2.1006 -1.2435 37 1 10.7997 -3.3386 -4.5838 38 1 2.9174 -1.1206 1.0285 39 1 1.0872 0.6161 2.5525 40 1 2.7590 1.0460 2.1182 41 1 1.1180 -2.4865 6.7602 42 1 4.1671 -2.5142 7.4928 43 1 2.7811 -3.0183 8.6000 44 1 2.1075 -4.8151 6.9402 45 1 3.4931 -4.3119 5.8322 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713298217.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:03 Heat of formation + Delta-G solvation = 75.206446 kcal Electronic energy + Delta-G solvation = -25756.389888 eV Core-core repulsion = 21937.786921 eV Total energy + Delta-G solvation = -3818.602967 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.54294 -39.66488 -37.93983 -37.41561 -34.39049 -32.80466 -32.54140 -32.47735 -30.49072 -29.55210 -26.68339 -25.76526 -25.40261 -24.84956 -22.73346 -21.39812 -21.11510 -20.64781 -20.20307 -18.46844 -18.00340 -16.91657 -16.59369 -16.40786 -16.05464 -15.72359 -15.49059 -15.17992 -15.00625 -14.94583 -14.27741 -13.92183 -13.61730 -13.50491 -13.11518 -13.02207 -12.84017 -12.57502 -12.40008 -12.32032 -12.04935 -11.94262 -11.83656 -11.51677 -11.35396 -11.30084 -11.04720 -10.89345 -10.66254 -10.34001 -10.26447 -9.90487 -9.72955 -9.64928 -9.15956 -9.07615 -9.04123 -8.56389 -6.97663 -6.33572 -4.06001 1.13859 2.18916 2.36210 2.66645 2.85643 3.20085 3.29648 3.31515 3.47023 3.55475 3.60847 3.69045 4.10972 4.21992 4.28837 4.31237 4.46915 4.56969 4.64400 4.67972 4.74140 4.89169 4.96991 5.05522 5.08538 5.17162 5.29742 5.36144 5.41207 5.42315 5.50575 5.65778 5.69950 5.70328 5.78084 5.89769 5.90104 5.92911 6.03623 6.31325 6.33998 6.63645 6.69771 7.38914 7.74977 7.89307 8.34983 8.36255 9.12468 10.75613 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010862 B = 0.002252 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.078236 B =12432.121781 C =14314.867742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.077 3.923 3 H 0.056 0.944 4 C 0.117 3.883 5 N -0.742 5.742 6 C 0.532 3.468 7 O -0.513 6.513 8 C -0.125 4.125 9 S -0.139 6.139 10 C -0.523 4.523 11 H 0.088 0.912 12 C 0.096 3.904 13 N -0.880 5.880 14 Si 0.857 3.143 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.235 1.235 18 N -0.676 5.676 19 C 0.137 3.863 20 C 0.287 3.713 21 N -0.514 5.514 22 C 0.257 3.743 23 C -0.074 4.074 24 C -0.161 4.161 25 C -0.157 4.157 26 N -0.308 5.308 27 N -0.479 5.479 28 H 0.441 0.559 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.392 0.608 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.271 0.729 38 H 0.345 0.655 39 H 0.114 0.886 40 H 0.058 0.942 41 H 0.132 0.868 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.105 0.895 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.858 7.939 19.961 28.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.033 4.033 3 H 0.074 0.926 4 C -0.007 4.007 5 N -0.398 5.398 6 C 0.318 3.682 7 O -0.387 6.387 8 C -0.276 4.276 9 S 0.087 5.913 10 C -0.670 4.670 11 H 0.106 0.894 12 C -0.113 4.113 13 N -0.516 5.516 14 Si 0.682 3.318 15 H -0.192 1.192 16 H -0.199 1.199 17 H -0.159 1.159 18 N -0.312 5.312 19 C 0.006 3.994 20 C 0.008 3.992 21 N -0.243 5.243 22 C -0.025 4.025 23 C -0.095 4.095 24 C -0.199 4.199 25 C -0.196 4.196 26 N -0.137 5.137 27 N -0.198 5.198 28 H 0.287 0.713 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.225 0.775 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.081 0.919 38 H 0.166 0.834 39 H 0.132 0.868 40 H 0.076 0.924 41 H 0.149 0.851 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -20.098 6.616 18.918 28.383 hybrid contribution 2.327 1.314 0.120 2.675 sum -17.771 7.929 19.038 27.224 Atomic orbital electron populations 1.21751 0.92743 1.03382 1.01890 1.21831 0.97365 0.96031 0.88038 0.92578 1.21559 0.80119 1.01991 0.97016 1.46003 1.07287 1.62143 1.24322 1.20270 0.89429 0.76774 0.81725 1.90718 1.69829 1.45725 1.32412 1.23283 0.93296 1.05458 1.05567 1.84825 1.07009 1.74641 1.24801 1.22299 0.88575 1.44810 1.11346 0.89434 1.24719 0.94110 0.94483 0.98012 1.69935 1.01544 1.43415 1.36710 0.86730 0.81331 0.80244 0.83528 1.19174 1.19878 1.15903 1.60397 1.34247 1.32705 1.03817 1.20465 1.02802 0.91520 0.84628 1.24127 0.81896 0.96363 0.96825 1.70286 1.34088 1.14708 1.05180 1.23218 0.86753 0.97080 0.95426 1.20083 0.99400 0.96093 0.93912 1.23064 0.99888 1.02344 0.94615 1.23063 1.03197 0.90950 1.02391 1.77970 1.20978 1.13096 1.01687 1.48030 1.09570 1.40411 1.21781 0.71347 0.92053 0.91841 0.91215 0.90295 0.90416 0.77463 0.88562 0.88539 0.91887 0.83408 0.86799 0.92428 0.85066 0.87819 0.87808 0.87616 0.88391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.42 37.16 0.35 -0.51 16 2 C 0.08 0.51 2.81 -67.71 -0.19 0.32 16 3 H 0.06 0.30 7.80 -51.93 -0.40 -0.11 16 4 C 0.12 1.13 5.31 -4.04 -0.02 1.11 16 5 N -0.74 -8.21 4.99 -60.29 -0.30 -8.52 16 6 C 0.53 8.86 7.85 -10.99 -0.09 8.77 16 7 O -0.51 -10.66 15.86 5.55 0.09 -10.57 16 8 C -0.13 -2.31 6.16 36.00 0.22 -2.09 16 9 S -0.14 -3.46 18.55 -107.50 -1.99 -5.45 16 10 C -0.52 -14.84 10.04 30.94 0.31 -14.53 16 11 H 0.09 2.58 8.03 -52.49 -0.42 2.16 16 12 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 13 N -0.88 -26.32 13.97 55.49 0.78 -25.55 16 14 Si 0.86 21.60 27.74 -169.99 -4.71 16.88 16 15 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 18 N -0.68 -4.89 6.29 -108.00 -0.68 -5.57 16 19 C 0.14 0.82 6.11 -4.98 -0.03 0.79 16 20 C 0.29 2.57 7.75 -155.69 -1.21 1.37 16 21 N -0.51 -5.94 11.19 -8.16 -0.09 -6.03 16 22 C 0.26 2.90 7.69 -156.86 -1.21 1.69 16 23 C -0.07 -0.64 6.33 -91.76 -0.58 -1.22 16 24 C -0.16 -1.13 10.14 -26.69 -0.27 -1.40 16 25 C -0.16 -1.17 10.24 -26.69 -0.27 -1.45 16 26 N -0.31 -3.47 12.34 32.42 0.40 -3.07 16 27 N -0.48 -4.11 7.45 32.62 0.24 -3.87 16 28 H 0.44 2.40 8.96 -182.34 -1.63 0.77 16 29 H 0.06 0.34 7.45 -51.93 -0.39 -0.05 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.39 3.15 7.37 -40.82 -0.30 2.85 16 35 H 0.10 1.62 8.14 -51.92 -0.42 1.20 16 36 H 0.10 1.65 8.14 -51.92 -0.42 1.23 16 37 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.35 2.66 6.70 -39.29 -0.26 2.40 16 39 H 0.11 0.64 7.44 -51.93 -0.39 0.25 16 40 H 0.06 0.20 8.06 -51.93 -0.42 -0.22 16 41 H 0.13 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.10 0.84 7.88 -51.93 -0.41 0.43 16 43 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 394.06 15.07 5.94 5.94 Total: -1.00 -36.69 394.06 -11.42 -48.11 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -8.01 Total: 2.18 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -3.08 Total: -4.48 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: 0.35 Total: -52.61 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.71 Total: 16.88 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -1.99 Total: -5.45 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.69 -11.42 -48.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713298217.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.314 kcal (2) G-P(sol) polarization free energy of solvation -36.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds