Wall clock time and date at job start Sat Apr 11 2020 05:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47213 * 2 1 4 4 C 1.53006 * 109.46761 * 119.99746 * 2 1 3 5 5 N 1.46900 * 109.46887 * 174.99772 * 4 2 1 6 6 C 1.46903 * 110.99853 * 180.02562 * 5 4 2 7 7 C 1.53002 * 109.47101 * 179.97438 * 6 5 4 8 8 H 1.08999 * 110.28320 * 304.48882 * 7 6 5 9 9 C 1.54424 * 110.24054 * 182.51840 * 7 6 5 10 10 C 1.54580 * 101.66975 * 215.49905 * 9 7 6 11 11 C 1.51477 * 104.21473 * 24.95978 * 10 9 7 12 12 N 1.31163 * 141.93472 * 163.86062 * 11 10 9 13 13 C 1.33162 * 109.83622 * 180.24289 * 12 11 10 14 14 N 1.30656 * 108.94537 * 359.51630 * 13 12 11 15 15 N 1.34115 * 110.05251 * 343.54052 * 11 10 9 16 16 N 1.46495 * 109.47073 * 239.99340 * 2 1 3 17 17 C 1.34781 * 119.99654 * 85.00517 * 16 2 1 18 18 O 1.21273 * 120.00181 * 0.02562 * 17 16 2 19 19 C 1.50701 * 119.99601 * 180.02562 * 17 16 2 20 20 S 1.81003 * 109.46707 * 180.02562 * 19 17 16 21 21 C 1.76208 * 99.99813 * 179.97438 * 20 19 17 22 22 H 1.07995 * 120.00290 * 359.97438 * 21 20 19 23 23 C 1.38797 * 119.99816 * 179.97438 * 21 20 19 24 24 N 1.31633 * 120.00100 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99890 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46799 * 90.00325 * 25 23 21 27 27 H 1.48500 * 109.47092 * 210.00131 * 25 23 21 28 28 H 1.48490 * 109.47406 * 330.00267 * 25 23 21 29 29 H 1.08994 * 109.47941 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47257 * 300.00883 * 1 2 3 31 31 H 1.09003 * 109.47022 * 60.00256 * 1 2 3 32 32 H 1.09000 * 109.47037 * 54.99980 * 4 2 1 33 33 H 1.08998 * 109.47222 * 294.99984 * 4 2 1 34 34 H 1.00904 * 110.99885 * 303.95350 * 5 4 2 35 35 H 1.08998 * 109.47321 * 60.00174 * 6 5 4 36 36 H 1.09000 * 109.47189 * 299.99978 * 6 5 4 37 37 H 1.08999 * 110.99477 * 333.59352 * 9 7 6 38 38 H 1.09001 * 110.98922 * 97.36629 * 9 7 6 39 39 H 1.08990 * 110.48410 * 143.64576 * 10 9 7 40 40 H 1.09002 * 110.47908 * 266.14488 * 10 9 7 41 41 H 1.08002 * 125.53079 * 179.78518 * 13 12 11 42 42 H 0.97004 * 120.00158 * 265.00452 * 16 2 1 43 43 H 1.09002 * 109.47267 * 299.99623 * 19 17 16 44 44 H 1.08999 * 109.47359 * 60.00281 * 19 17 16 45 45 H 0.97004 * 119.99882 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5039 -0.8267 1.1905 6 6 4.0301 -1.5159 2.3763 7 6 5.5543 -1.6070 2.2789 8 1 5.8451 -2.0927 1.3474 9 6 6.1214 -2.3844 3.4866 10 6 7.4515 -1.6393 3.7415 11 6 7.2180 -0.2556 3.1712 12 7 7.7016 0.9635 3.1881 13 6 6.9621 1.7539 2.4125 14 7 6.0006 1.0469 1.8806 15 7 6.1497 -0.2667 2.3604 16 7 2.0183 -0.6907 -1.1961 17 6 2.1471 -0.0184 -2.3571 18 8 1.8592 1.1584 -2.4115 19 6 2.6488 -0.7291 -3.5876 20 16 2.7107 0.4341 -4.9730 21 6 3.3137 -0.6313 -6.2403 22 1 3.5229 -1.6677 -6.0204 23 6 3.5199 -0.1384 -7.5214 24 7 3.2654 1.1249 -7.7894 25 14 4.1599 -1.2677 -8.8647 26 1 3.0146 -1.9054 -9.5626 27 1 4.9551 -0.4774 -9.8386 28 1 5.0187 -2.3180 -8.2611 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6052 -1.7198 1.2953 33 1 1.7515 -0.1583 2.1370 34 1 3.7994 -1.2885 0.3434 35 1 3.6093 -2.5200 2.4297 36 1 3.7556 -0.9588 3.2721 37 1 5.4584 -2.3054 4.3482 38 1 6.3011 -3.4283 3.2295 39 1 7.6576 -1.5816 4.8102 40 1 8.2718 -2.1347 3.2221 41 1 7.1322 2.8073 2.2462 42 1 2.2489 -1.6319 -1.1524 43 1 3.6480 -1.1217 -3.3985 44 1 1.9759 -1.5508 -3.8324 45 1 3.4099 1.4694 -8.6846 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716429544.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:20 Heat of formation + Delta-G solvation = 39.042080 kcal Electronic energy + Delta-G solvation = -26495.951898 eV Core-core repulsion = 22675.780726 eV Total energy + Delta-G solvation = -3820.171172 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.33480 -40.82164 -38.81294 -37.56647 -35.25215 -34.59774 -33.01211 -32.55426 -30.67752 -30.11538 -29.70328 -27.67588 -26.51467 -24.16637 -23.51882 -22.75017 -21.63545 -21.46282 -21.35867 -19.87570 -18.15561 -17.96548 -17.44329 -16.90909 -16.87080 -16.48502 -16.27890 -16.00059 -15.86592 -15.52270 -15.25014 -14.98522 -14.82259 -14.64660 -14.54856 -13.99889 -13.89429 -13.37473 -13.33171 -13.18092 -13.13950 -12.94832 -12.90662 -12.86847 -12.58802 -12.40083 -12.27818 -12.13716 -11.84823 -11.72076 -11.15558 -10.91777 -10.90025 -10.66778 -10.35039 -10.28214 -10.12985 -9.31659 -8.68297 -8.35799 -6.14245 0.75089 1.25720 1.33559 1.41326 1.46086 1.56285 1.64508 1.98253 2.24664 2.28888 2.70389 2.98209 3.00264 3.31566 3.35623 3.70945 3.72708 3.84286 4.00306 4.02437 4.16976 4.19621 4.25562 4.31883 4.37244 4.44071 4.47170 4.48155 4.62940 4.68773 4.73507 4.76727 4.83621 4.99617 5.06782 5.10924 5.23717 5.39867 5.49604 5.53013 5.58328 5.77251 6.00496 6.18262 6.33230 6.51177 7.05082 7.23110 7.28370 8.73555 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011270 B = 0.002470 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.832964 B =11333.632150 C =12534.174774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.146 3.854 3 H 0.054 0.946 4 C 0.072 3.928 5 N -0.704 5.704 6 C 0.060 3.940 7 C 0.139 3.861 8 H 0.104 0.896 9 C -0.107 4.107 10 C -0.044 4.044 11 C 0.230 3.770 12 N -0.572 5.572 13 C 0.173 3.827 14 N -0.308 5.308 15 N -0.382 5.382 16 N -0.704 5.704 17 C 0.536 3.464 18 O -0.566 6.566 19 C -0.127 4.127 20 S -0.156 6.156 21 C -0.545 4.545 22 H 0.083 0.917 23 C 0.011 3.989 24 N -0.913 5.913 25 Si 1.000 3.000 26 H -0.266 1.266 27 H -0.279 1.279 28 H -0.257 1.257 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.031 0.969 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.341 0.659 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.107 0.893 38 H 0.147 0.853 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.232 0.768 42 H 0.412 0.588 43 H 0.106 0.894 44 H 0.110 0.890 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.280 -16.606 29.225 33.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.042 3.958 3 H 0.072 0.928 4 C -0.057 4.057 5 N -0.337 5.337 6 C -0.069 4.069 7 C 0.037 3.963 8 H 0.122 0.878 9 C -0.146 4.146 10 C -0.084 4.084 11 C -0.047 4.047 12 N -0.302 5.302 13 C -0.129 4.129 14 N -0.135 5.135 15 N -0.173 5.173 16 N -0.358 5.358 17 C 0.321 3.679 18 O -0.444 6.444 19 C -0.278 4.278 20 S 0.071 5.929 21 C -0.693 4.693 22 H 0.101 0.899 23 C -0.194 4.194 24 N -0.549 5.549 25 Si 0.822 3.178 26 H -0.192 1.192 27 H -0.204 1.204 28 H -0.181 1.181 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.051 0.949 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.160 0.840 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.126 0.874 38 H 0.165 0.835 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.249 0.751 42 H 0.248 0.752 43 H 0.124 0.876 44 H 0.129 0.871 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.461 -13.491 28.858 31.951 hybrid contribution 0.481 -2.045 -1.451 2.553 sum 2.942 -15.535 27.407 31.641 Atomic orbital electron populations 1.22093 0.94129 1.03157 1.02113 1.20982 0.94266 0.96843 0.83754 0.92772 1.22102 0.87117 1.00136 0.96345 1.60218 1.10340 1.58095 1.05004 1.22268 0.91674 0.99101 0.93856 1.22671 0.94557 0.76152 1.02881 0.87803 1.23034 0.94577 1.01036 0.95931 1.21133 1.00463 0.82607 1.04152 1.26253 0.88080 0.96836 0.93566 1.70022 1.32369 1.01227 1.26567 1.26572 0.90136 1.02055 0.94139 1.78227 1.24095 0.87945 1.23247 1.51736 1.24220 1.07498 1.33892 1.45708 1.67645 1.14109 1.08383 1.20032 0.76604 0.86533 0.84694 1.90692 1.50640 1.17899 1.85156 1.23351 1.05297 1.03102 0.96049 1.85662 1.86707 1.17554 1.02950 1.23195 1.50910 0.98401 0.96746 0.89852 1.26172 0.95104 0.97235 1.00848 1.70198 1.46924 1.15546 1.22240 0.84928 0.78445 0.77700 0.76740 1.19158 1.20398 1.18078 0.90324 0.89926 0.94930 0.91598 0.89377 0.83978 0.89309 0.91080 0.87447 0.83478 0.85946 0.85960 0.75149 0.75160 0.87554 0.87139 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.21 9.48 71.98 0.68 -2.53 16 2 C 0.15 3.35 2.88 44.99 0.13 3.48 16 3 H 0.05 1.74 7.58 -2.39 -0.02 1.73 16 4 C 0.07 1.04 5.30 86.31 0.46 1.49 16 5 N -0.70 -11.59 6.46 -513.87 -3.32 -14.91 16 6 C 0.06 0.57 5.26 86.30 0.45 1.03 16 7 C 0.14 1.40 3.69 45.40 0.17 1.56 16 8 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 9 C -0.11 -0.08 6.69 31.62 0.21 0.13 16 10 C -0.04 -0.26 6.86 30.63 0.21 -0.05 16 11 C 0.23 4.50 8.65 138.47 1.20 5.70 16 12 N -0.57 -15.02 11.20 -191.09 -2.14 -17.16 16 13 C 0.17 4.69 13.03 180.81 2.36 7.04 16 14 N -0.31 -9.08 12.80 -61.32 -0.79 -9.86 16 15 N -0.38 -8.04 4.49 -314.12 -1.41 -9.45 16 16 N -0.70 -17.49 4.36 -442.55 -1.93 -19.42 16 17 C 0.54 20.30 7.81 87.66 0.68 20.99 16 18 O -0.57 -27.54 15.52 -3.01 -0.05 -27.59 16 19 C -0.13 -5.10 6.16 71.24 0.44 -4.66 16 20 S -0.16 -8.88 20.57 -56.49 -1.16 -10.04 16 21 C -0.54 -31.52 9.50 67.95 0.65 -30.88 16 22 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 23 C 0.01 0.63 5.49 84.86 0.47 1.10 16 24 N -0.91 -57.14 13.22 21.65 0.29 -56.85 16 25 Si 1.00 44.02 29.55 68.60 2.03 46.05 16 26 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 27 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 28 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.34 5.67 7.58 -89.69 -0.68 4.99 16 35 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 36 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 37 H 0.11 -0.15 7.91 -2.39 -0.02 -0.17 16 38 H 0.15 -0.91 8.14 -2.39 -0.02 -0.93 16 39 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 41 H 0.23 4.89 8.06 -2.91 -0.02 4.86 16 42 H 0.41 6.93 8.15 -92.71 -0.76 6.17 16 43 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 44 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 45 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -94.00 391.53 -0.80 -94.79 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -0.42 Total: 20.03 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: 8.10 Total: 4.41 kcal Atomic # 7 Polarization: -118.36 SS G_CDS: -9.29 Total: -127.66 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.05 Total: -27.59 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: -8.88 SS G_CDS: -1.16 Total: -10.04 kcal Total: -94.00 -0.80 -94.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716429544.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.836 kcal (2) G-P(sol) polarization free energy of solvation -93.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds