Wall clock time and date at job start Sat Apr 11 2020 05:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.47582 * 2 1 4 4 N 1.46499 * 109.47557 * 239.99653 * 2 1 3 5 5 C 1.34774 * 120.00226 * 84.99606 * 4 2 1 6 6 O 1.21287 * 119.99594 * 0.02562 * 5 4 2 7 7 C 1.50697 * 120.00316 * 180.02562 * 5 4 2 8 8 S 1.81008 * 109.47284 * 180.02562 * 7 5 4 9 9 C 1.76199 * 100.00104 * 180.02562 * 8 7 5 10 10 H 1.08002 * 119.99893 * 0.02562 * 9 8 7 11 11 C 1.38793 * 119.99963 * 180.02562 * 9 8 7 12 12 N 1.31633 * 119.99973 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 119.99990 * 359.97438 * 11 9 8 14 14 H 1.48507 * 109.46640 * 90.00756 * 13 11 9 15 15 H 1.48499 * 109.47156 * 210.00224 * 13 11 9 16 16 H 1.48495 * 109.47158 * 330.00840 * 13 11 9 17 17 C 1.53002 * 109.47204 * 119.99663 * 2 1 3 18 18 C 1.53515 * 114.17322 * 185.05321 * 17 2 1 19 19 N 1.47477 * 87.93385 * 139.85921 * 18 17 2 20 20 C 1.46901 * 111.00365 * 221.29800 * 19 18 17 21 21 C 1.50707 * 109.47196 * 169.99978 * 20 19 18 22 22 N 1.30514 * 126.34492 * 270.00080 * 21 20 19 23 23 N 1.28597 * 109.67146 * 179.73010 * 22 21 20 24 24 C 1.30522 * 109.67147 * 0.44535 * 23 22 21 25 25 N 1.35488 * 126.34386 * 89.99918 * 21 20 19 26 26 C 1.46502 * 126.98283 * 0.02562 * 25 21 20 27 27 C 1.47481 * 87.83781 * 332.99293 * 19 18 17 28 28 H 1.08997 * 109.47396 * 299.14743 * 1 2 3 29 29 H 1.08996 * 109.47236 * 59.15204 * 1 2 3 30 30 H 1.09004 * 109.46978 * 179.14946 * 1 2 3 31 31 H 0.97002 * 120.00302 * 265.00507 * 4 2 1 32 32 H 1.08997 * 109.47343 * 299.99931 * 7 5 4 33 33 H 1.09002 * 109.47502 * 60.00317 * 7 5 4 34 34 H 0.97002 * 119.99551 * 179.97438 * 12 11 9 35 35 H 1.09001 * 113.25832 * 52.10436 * 17 2 1 36 36 H 1.08999 * 113.47293 * 25.09611 * 18 17 2 37 37 H 1.08998 * 113.53628 * 254.63584 * 18 17 2 38 38 H 1.09002 * 109.46718 * 50.00206 * 20 19 18 39 39 H 1.08993 * 109.46877 * 289.99936 * 20 19 18 40 40 H 1.08000 * 126.34680 * 179.82118 * 24 23 22 41 41 H 1.08998 * 109.46758 * 269.97283 * 26 25 21 42 42 H 1.08998 * 109.46760 * 29.96514 * 26 25 21 43 43 H 1.08996 * 109.47331 * 149.96863 * 26 25 21 44 44 H 1.08998 * 113.47962 * 141.77416 * 27 19 18 45 45 H 1.09000 * 113.47720 * 272.24454 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8589 1.1584 -2.4115 7 6 2.6489 -0.7290 -3.5876 8 16 2.7106 0.4342 -4.9731 9 6 3.3124 -0.6315 -6.2407 10 1 3.5204 -1.6683 -6.0210 11 6 3.5191 -0.1385 -7.5216 12 7 3.9682 -0.9348 -8.4687 13 14 3.1587 1.6545 -7.9018 14 1 4.3785 2.4664 -7.6608 15 1 2.7491 1.7866 -9.3231 16 1 2.0621 2.1360 -7.0238 17 6 2.0399 -0.7212 1.2493 18 6 3.5648 -0.6782 1.4215 19 7 3.3424 -0.4702 2.8645 20 6 4.2710 0.5337 3.4011 21 6 3.8598 0.8992 4.8041 22 7 3.0382 1.8541 5.1454 23 7 2.9120 1.8800 6.4249 24 6 3.6549 0.9488 6.9585 25 7 4.2747 0.2975 5.9449 26 6 5.2050 -0.8285 6.0594 27 6 2.0451 0.1406 2.5197 28 1 -0.3634 0.5005 0.8975 29 1 -0.3633 0.5269 -0.8822 30 1 -0.3633 -1.0276 -0.0153 31 1 2.2490 -1.6318 -1.1525 32 1 3.6481 -1.1215 -3.3985 33 1 1.9761 -1.5509 -3.8325 34 1 4.1122 -0.5903 -9.3640 35 1 1.6035 -1.7110 1.3832 36 1 4.0337 0.1728 0.9274 37 1 4.0559 -1.6232 1.1896 38 1 4.2471 1.4236 2.7720 39 1 5.2811 0.1244 3.4134 40 1 3.7536 0.7344 8.0124 41 1 4.6477 -1.7647 6.0282 42 1 5.9137 -0.7998 5.2317 43 1 5.7456 -0.7587 7.0033 44 1 1.2472 -0.1111 3.2184 45 1 2.1084 1.2100 2.3186 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717541691.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:40 Heat of formation + Delta-G solvation = 82.794759 kcal Electronic energy + Delta-G solvation = -26245.211113 eV Core-core repulsion = 22426.937200 eV Total energy + Delta-G solvation = -3818.273913 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.50637 -40.87341 -39.12060 -35.63365 -35.30504 -32.80714 -32.44512 -31.30416 -29.25035 -28.55879 -28.08463 -26.27024 -25.62402 -25.40964 -22.77496 -22.43606 -21.01433 -20.46673 -19.97461 -17.92547 -17.60442 -17.02943 -16.60860 -16.45337 -16.10614 -15.59494 -15.42508 -15.09323 -14.99466 -14.91959 -14.09987 -13.93240 -13.74711 -13.66945 -13.32593 -13.25656 -13.06318 -12.83692 -12.79542 -12.42655 -12.05398 -11.90264 -11.80393 -11.33543 -11.25786 -11.09831 -11.01026 -10.86958 -10.72253 -10.62138 -10.59037 -9.86500 -9.76428 -9.50837 -9.39444 -9.02293 -8.95664 -8.50501 -6.92389 -6.29728 -4.01395 1.35308 2.03230 2.48752 2.74581 2.97256 3.26235 3.32938 3.49676 3.50332 3.60811 3.80214 4.02943 4.11296 4.16209 4.32405 4.34697 4.38605 4.49058 4.71640 4.75008 4.82461 4.88241 4.91049 5.02811 5.08903 5.09528 5.16989 5.24363 5.33580 5.36988 5.41360 5.45185 5.61420 5.69245 5.71935 5.75312 5.76751 5.98355 6.00897 6.18253 6.37464 6.45424 6.58231 7.62265 7.93331 8.35066 8.40657 8.50004 9.16587 10.79440 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.024194 B = 0.001893 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.028947 B =14785.132751 C =14973.430926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.155 3.845 3 H 0.088 0.912 4 N -0.731 5.731 5 C 0.532 3.468 6 O -0.519 6.519 7 C -0.124 4.124 8 S -0.142 6.142 9 C -0.521 4.521 10 H 0.088 0.912 11 C 0.095 3.905 12 N -0.880 5.880 13 Si 0.857 3.143 14 H -0.267 1.267 15 H -0.274 1.274 16 H -0.235 1.235 17 C -0.123 4.123 18 C 0.007 3.993 19 N -0.472 5.472 20 C 0.103 3.897 21 C 0.185 3.815 22 N -0.287 5.287 23 N -0.297 5.297 24 C 0.147 3.853 25 N -0.469 5.469 26 C 0.075 3.925 27 C 0.017 3.983 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.399 0.601 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.271 0.729 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.218 0.782 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.876 -4.241 31.368 31.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.050 3.950 3 H 0.106 0.894 4 N -0.385 5.385 5 C 0.318 3.682 6 O -0.393 6.393 7 C -0.275 4.275 8 S 0.084 5.916 9 C -0.669 4.669 10 H 0.106 0.894 11 C -0.113 4.113 12 N -0.517 5.517 13 Si 0.681 3.319 14 H -0.192 1.192 15 H -0.200 1.200 16 H -0.159 1.159 17 C -0.142 4.142 18 C -0.121 4.121 19 N -0.195 5.195 20 C -0.028 4.028 21 C -0.083 4.083 22 N -0.129 5.129 23 N -0.136 5.136 24 C -0.141 4.141 25 N -0.160 5.160 26 C -0.068 4.068 27 C -0.113 4.113 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.233 0.767 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.080 0.920 35 H 0.126 0.874 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.100 0.900 39 H 0.114 0.886 40 H 0.235 0.765 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.104 0.896 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.586 -1.690 31.480 31.531 hybrid contribution 1.456 -1.702 -0.485 2.292 sum 2.042 -3.392 30.995 31.247 Atomic orbital electron populations 1.22151 0.95023 1.02201 1.02736 1.20839 0.94359 0.97008 0.82806 0.89374 1.45998 1.69165 1.13986 1.09344 1.20273 0.76913 0.87231 0.83825 1.90705 1.48453 1.15769 1.84407 1.23281 1.04413 1.03467 0.96315 1.84805 1.87246 1.16743 1.02778 1.22317 1.50414 0.98749 0.95418 0.89407 1.24716 0.93365 0.98291 0.94961 1.69941 1.43417 1.35785 1.02549 0.86736 0.81116 0.84843 0.79163 1.19224 1.19950 1.15909 1.23047 0.95982 1.00847 0.94341 1.23864 0.96995 1.03248 0.88018 1.69018 1.03164 1.32204 1.15086 1.21004 0.97895 0.96736 0.87124 1.24548 0.98897 0.94283 0.90560 1.74288 1.15599 1.17307 1.05669 1.74272 1.19414 1.18737 1.01168 1.26456 0.96599 0.94425 0.96578 1.46145 1.35668 1.27351 1.06792 1.22116 0.92574 0.87383 1.04761 1.23813 0.93286 0.98512 0.95657 0.91748 0.91617 0.92442 0.76742 0.88582 0.88507 0.91952 0.87404 0.90331 0.89018 0.89988 0.88644 0.76538 0.89512 0.89082 0.89041 0.89591 0.89942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.47 37.15 0.35 -1.31 16 2 C 0.16 1.58 2.34 -67.93 -0.16 1.42 16 3 H 0.09 1.09 7.45 -51.93 -0.39 0.70 16 4 N -0.73 -8.40 4.96 -53.81 -0.27 -8.66 16 5 C 0.53 8.91 7.81 -10.99 -0.09 8.83 16 6 O -0.52 -10.77 15.53 5.55 0.09 -10.68 16 7 C -0.12 -2.31 6.16 36.00 0.22 -2.09 16 8 S -0.14 -3.55 18.55 -107.50 -1.99 -5.54 16 9 C -0.52 -14.86 10.04 30.94 0.31 -14.55 16 10 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 11 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 12 N -0.88 -26.39 13.97 55.49 0.78 -25.62 16 13 Si 0.86 21.69 27.74 -169.99 -4.71 16.98 16 14 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 17 C -0.12 -0.92 3.48 -90.09 -0.31 -1.23 16 18 C 0.01 0.05 7.17 -7.54 -0.05 0.00 16 19 N -0.47 -3.55 6.40 -246.07 -1.58 -5.12 16 20 C 0.10 0.74 5.18 -4.97 -0.03 0.72 16 21 C 0.19 1.70 7.18 -154.99 -1.11 0.58 16 22 N -0.29 -3.57 12.21 32.80 0.40 -3.17 16 23 N -0.30 -3.51 12.21 29.69 0.36 -3.15 16 24 C 0.15 1.09 12.74 -89.94 -1.15 -0.06 16 25 N -0.47 -3.10 3.15 -122.69 -0.39 -3.49 16 26 C 0.07 0.16 11.04 59.85 0.66 0.82 16 27 C 0.02 0.14 6.87 -7.54 -0.05 0.09 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.40 3.48 8.60 -40.82 -0.35 3.13 16 32 H 0.10 1.65 8.14 -51.92 -0.42 1.22 16 33 H 0.10 1.69 8.14 -51.92 -0.42 1.26 16 34 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.62 7.73 -51.93 -0.40 0.21 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.64 7.56 -51.93 -0.39 0.24 16 39 H 0.10 0.48 7.21 -51.93 -0.37 0.11 16 40 H 0.22 0.60 8.06 -52.49 -0.42 0.18 16 41 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 42 H 0.09 0.13 7.20 -51.93 -0.37 -0.24 16 43 H 0.09 -0.01 8.14 -51.93 -0.42 -0.43 16 44 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.08 0.76 7.57 -51.93 -0.39 0.37 16 LS Contribution 389.80 15.07 5.87 5.87 Total: -1.00 -37.63 389.80 -9.84 -47.47 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -6.90 Total: -0.78 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -1.50 Total: -4.11 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: -0.69 Total: -49.20 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.71 Total: 16.98 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.63 -9.84 -47.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717541691.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.265 kcal (2) G-P(sol) polarization free energy of solvation -37.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds