Wall clock time and date at job start Sat Apr 11 2020 05:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.47582 * 2 1 4 4 N 1.46499 * 109.47557 * 239.99653 * 2 1 3 5 5 C 1.34774 * 120.00226 * 84.99606 * 4 2 1 6 6 O 1.21287 * 119.99594 * 0.02562 * 5 4 2 7 7 C 1.50697 * 120.00316 * 180.02562 * 5 4 2 8 8 S 1.81008 * 109.47284 * 180.02562 * 7 5 4 9 9 C 1.76199 * 100.00104 * 180.02562 * 8 7 5 10 10 H 1.08002 * 119.99893 * 0.02562 * 9 8 7 11 11 C 1.38793 * 119.99963 * 180.02562 * 9 8 7 12 12 N 1.31633 * 119.99973 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 119.99990 * 359.97438 * 11 9 8 14 14 H 1.48507 * 109.46640 * 90.00756 * 13 11 9 15 15 H 1.48499 * 109.47156 * 210.00224 * 13 11 9 16 16 H 1.48495 * 109.47158 * 330.00840 * 13 11 9 17 17 C 1.53002 * 109.47204 * 119.99663 * 2 1 3 18 18 C 1.53515 * 114.17322 * 185.05321 * 17 2 1 19 19 N 1.47477 * 87.93385 * 139.85921 * 18 17 2 20 20 C 1.46901 * 111.00365 * 221.29800 * 19 18 17 21 21 C 1.50707 * 109.47196 * 169.99978 * 20 19 18 22 22 N 1.30514 * 126.34492 * 270.00080 * 21 20 19 23 23 N 1.28597 * 109.67146 * 179.73010 * 22 21 20 24 24 C 1.30522 * 109.67147 * 0.44535 * 23 22 21 25 25 N 1.35488 * 126.34386 * 89.99918 * 21 20 19 26 26 C 1.46502 * 126.98283 * 0.02562 * 25 21 20 27 27 C 1.47481 * 87.83781 * 332.99293 * 19 18 17 28 28 H 1.08997 * 109.47396 * 299.14743 * 1 2 3 29 29 H 1.08996 * 109.47236 * 59.15204 * 1 2 3 30 30 H 1.09004 * 109.46978 * 179.14946 * 1 2 3 31 31 H 0.97002 * 120.00302 * 265.00507 * 4 2 1 32 32 H 1.08997 * 109.47343 * 299.99931 * 7 5 4 33 33 H 1.09002 * 109.47502 * 60.00317 * 7 5 4 34 34 H 0.97002 * 119.99551 * 179.97438 * 12 11 9 35 35 H 1.09001 * 113.25832 * 52.10436 * 17 2 1 36 36 H 1.08999 * 113.47293 * 25.09611 * 18 17 2 37 37 H 1.08998 * 113.53628 * 254.63584 * 18 17 2 38 38 H 1.09002 * 109.46718 * 50.00206 * 20 19 18 39 39 H 1.08993 * 109.46877 * 289.99936 * 20 19 18 40 40 H 1.08000 * 126.34680 * 179.82118 * 24 23 22 41 41 H 1.08998 * 109.46758 * 269.97283 * 26 25 21 42 42 H 1.08998 * 109.46760 * 29.96514 * 26 25 21 43 43 H 1.08996 * 109.47331 * 149.96863 * 26 25 21 44 44 H 1.08998 * 113.47962 * 141.77416 * 27 19 18 45 45 H 1.09000 * 113.47720 * 272.24454 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8589 1.1584 -2.4115 7 6 2.6489 -0.7290 -3.5876 8 16 2.7106 0.4342 -4.9731 9 6 3.3124 -0.6315 -6.2407 10 1 3.5204 -1.6683 -6.0210 11 6 3.5191 -0.1385 -7.5216 12 7 3.9682 -0.9348 -8.4687 13 14 3.1587 1.6545 -7.9018 14 1 4.3785 2.4664 -7.6608 15 1 2.7491 1.7866 -9.3231 16 1 2.0621 2.1360 -7.0238 17 6 2.0399 -0.7212 1.2493 18 6 3.5648 -0.6782 1.4215 19 7 3.3424 -0.4702 2.8645 20 6 4.2710 0.5337 3.4011 21 6 3.8598 0.8992 4.8041 22 7 3.0382 1.8541 5.1454 23 7 2.9120 1.8800 6.4249 24 6 3.6549 0.9488 6.9585 25 7 4.2747 0.2975 5.9449 26 6 5.2050 -0.8285 6.0594 27 6 2.0451 0.1406 2.5197 28 1 -0.3634 0.5005 0.8975 29 1 -0.3633 0.5269 -0.8822 30 1 -0.3633 -1.0276 -0.0153 31 1 2.2490 -1.6318 -1.1525 32 1 3.6481 -1.1215 -3.3985 33 1 1.9761 -1.5509 -3.8325 34 1 4.1122 -0.5903 -9.3640 35 1 1.6035 -1.7110 1.3832 36 1 4.0337 0.1728 0.9274 37 1 4.0559 -1.6232 1.1896 38 1 4.2471 1.4236 2.7720 39 1 5.2811 0.1244 3.4134 40 1 3.7536 0.7344 8.0124 41 1 4.6477 -1.7647 6.0282 42 1 5.9137 -0.7998 5.2317 43 1 5.7456 -0.7587 7.0033 44 1 1.2472 -0.1111 3.2184 45 1 2.1084 1.2100 2.3186 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717541691.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:39 Heat of formation + Delta-G solvation = 54.672867 kcal Electronic energy + Delta-G solvation = -26246.430570 eV Core-core repulsion = 22426.937200 eV Total energy + Delta-G solvation = -3819.493370 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.10803 -41.61437 -40.33781 -36.52741 -35.95858 -34.65903 -33.59809 -32.33833 -30.22975 -29.56070 -28.40571 -27.83676 -26.91385 -26.10422 -23.35172 -23.30008 -21.77090 -21.44630 -20.82516 -19.80681 -18.15247 -17.91050 -17.64701 -17.39779 -17.07863 -16.73386 -16.44065 -16.19722 -16.02796 -15.82125 -15.64025 -14.97037 -14.73100 -14.55476 -14.25110 -14.18305 -13.89483 -13.81646 -13.56820 -13.34227 -13.28916 -13.08103 -12.99884 -12.74373 -12.57934 -12.50297 -12.01521 -11.88565 -11.84300 -11.53037 -11.34884 -11.16115 -11.09350 -10.92061 -10.50658 -10.45174 -10.15380 -9.95377 -8.97482 -8.50522 -6.20583 0.80466 1.01090 1.31630 1.47884 1.57074 1.61483 1.62108 1.82581 2.21692 2.26594 2.73480 2.87848 2.88996 3.20855 3.40117 3.64791 3.69069 3.88882 3.90813 3.94833 4.14593 4.18407 4.26259 4.27886 4.34784 4.40887 4.45797 4.49211 4.51113 4.56775 4.71878 4.72977 4.77260 4.81140 4.92439 4.98529 5.08514 5.15911 5.18779 5.33275 5.53163 5.72024 5.81853 5.95858 6.12849 6.54227 6.95140 7.26602 7.71095 8.61679 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.024194 B = 0.001893 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.028947 B =14785.132751 C =14973.430926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.158 3.842 3 H 0.065 0.935 4 N -0.703 5.703 5 C 0.537 3.463 6 O -0.564 6.564 7 C -0.110 4.110 8 S -0.180 6.180 9 C -0.527 4.527 10 H 0.064 0.936 11 C 0.045 3.955 12 N -0.916 5.916 13 Si 0.913 3.087 14 H -0.263 1.263 15 H -0.260 1.260 16 H -0.238 1.238 17 C -0.107 4.107 18 C 0.011 3.989 19 N -0.466 5.466 20 C 0.105 3.895 21 C 0.180 3.820 22 N -0.336 5.336 23 N -0.352 5.352 24 C 0.161 3.839 25 N -0.465 5.465 26 C 0.067 3.933 27 C 0.017 3.983 28 H 0.076 0.924 29 H 0.035 0.965 30 H 0.074 0.926 31 H 0.417 0.583 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.276 0.724 35 H 0.128 0.872 36 H 0.070 0.930 37 H 0.111 0.889 38 H 0.071 0.929 39 H 0.121 0.879 40 H 0.260 0.740 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.119 0.881 44 H 0.079 0.921 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.615 -5.810 33.538 34.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.053 3.947 3 H 0.083 0.917 4 N -0.357 5.357 5 C 0.322 3.678 6 O -0.442 6.442 7 C -0.261 4.261 8 S 0.047 5.953 9 C -0.674 4.674 10 H 0.082 0.918 11 C -0.160 4.160 12 N -0.555 5.555 13 Si 0.735 3.265 14 H -0.187 1.187 15 H -0.185 1.185 16 H -0.162 1.162 17 C -0.126 4.126 18 C -0.118 4.118 19 N -0.189 5.189 20 C -0.025 4.025 21 C -0.090 4.090 22 N -0.177 5.177 23 N -0.191 5.191 24 C -0.128 4.128 25 N -0.155 5.155 26 C -0.074 4.074 27 C -0.112 4.112 28 H 0.094 0.906 29 H 0.054 0.946 30 H 0.093 0.907 31 H 0.255 0.745 32 H 0.134 0.866 33 H 0.131 0.869 34 H 0.086 0.914 35 H 0.146 0.854 36 H 0.088 0.912 37 H 0.129 0.871 38 H 0.089 0.911 39 H 0.139 0.861 40 H 0.276 0.724 41 H 0.112 0.888 42 H 0.119 0.881 43 H 0.137 0.863 44 H 0.097 0.903 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.338 -3.319 33.684 33.873 hybrid contribution 1.253 -1.349 -0.964 2.079 sum 2.591 -4.669 32.720 33.152 Atomic orbital electron populations 1.22112 0.94730 1.03009 1.01903 1.20891 0.94511 0.96222 0.83115 0.91659 1.45729 1.67235 1.14672 1.08062 1.19933 0.76754 0.86545 0.84523 1.90701 1.50783 1.17622 1.85107 1.23273 1.06264 1.02136 0.94438 1.84768 1.87054 1.18783 1.04718 1.22463 1.49987 0.98257 0.96721 0.91809 1.25544 0.93333 1.02112 0.95003 1.70017 1.44623 1.37623 1.03188 0.85886 0.80953 0.80185 0.79460 1.18728 1.18468 1.16194 1.22953 0.96495 1.01000 0.92141 1.23869 0.96483 1.03828 0.87592 1.69009 1.02696 1.31925 1.15272 1.21068 0.98976 0.96414 0.86083 1.24768 0.98422 0.93967 0.91845 1.74169 1.17687 1.19457 1.06423 1.74153 1.22112 1.21479 1.01370 1.27224 0.94612 0.92711 0.98213 1.46397 1.35635 1.27774 1.05681 1.22477 0.92170 0.85984 1.06755 1.23718 0.93813 0.97838 0.95870 0.90557 0.94604 0.90671 0.74529 0.86632 0.86897 0.91427 0.85423 0.91192 0.87116 0.91107 0.86067 0.72445 0.88804 0.88129 0.86289 0.90270 0.91508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 9.47 71.98 0.68 -2.38 16 2 C 0.16 3.00 2.34 44.99 0.11 3.10 16 3 H 0.07 1.61 7.45 -2.39 -0.02 1.59 16 4 N -0.70 -14.63 4.96 -442.55 -2.19 -16.82 16 5 C 0.54 17.35 7.81 87.66 0.68 18.04 16 6 O -0.56 -23.42 15.53 -3.05 -0.05 -23.47 16 7 C -0.11 -3.95 6.16 71.23 0.44 -3.51 16 8 S -0.18 -8.95 18.55 -56.49 -1.05 -10.00 16 9 C -0.53 -30.27 10.04 67.95 0.68 -29.58 16 10 H 0.06 3.85 8.03 -2.91 -0.02 3.82 16 11 C 0.05 2.65 5.50 84.86 0.47 3.12 16 12 N -0.92 -55.40 13.97 21.65 0.30 -55.10 16 13 Si 0.91 44.93 27.74 68.60 1.90 46.83 16 14 H -0.26 -12.60 7.11 99.48 0.71 -11.90 16 15 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 16 H -0.24 -11.74 6.74 99.48 0.67 -11.07 16 17 C -0.11 -1.35 3.48 -10.45 -0.04 -1.39 16 18 C 0.01 0.12 7.17 83.58 0.60 0.72 16 19 N -0.47 -6.09 6.40 -932.43 -5.97 -12.06 16 20 C 0.10 1.38 5.18 85.56 0.44 1.83 16 21 C 0.18 3.15 7.18 137.98 0.99 4.14 16 22 N -0.34 -8.55 12.21 -50.16 -0.61 -9.17 16 23 N -0.35 -8.40 12.21 -59.99 -0.73 -9.14 16 24 C 0.16 2.12 12.74 180.11 2.30 4.42 16 25 N -0.47 -5.20 3.15 -542.08 -1.71 -6.91 16 26 C 0.07 0.07 11.04 127.77 1.41 1.48 16 27 C 0.02 0.27 6.87 83.58 0.57 0.84 16 28 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.42 5.81 8.60 -92.71 -0.80 5.01 16 32 H 0.12 3.72 8.14 -2.40 -0.02 3.70 16 33 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 34 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 35 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.07 0.98 7.73 -2.39 -0.02 0.96 16 37 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.07 1.10 7.56 -2.39 -0.02 1.08 16 39 H 0.12 0.92 7.21 -2.39 -0.02 0.90 16 40 H 0.26 0.65 8.06 -2.91 -0.02 0.63 16 41 H 0.09 0.02 8.14 -2.39 -0.02 0.00 16 42 H 0.10 -0.06 7.20 -2.39 -0.02 -0.07 16 43 H 0.12 -0.50 8.14 -2.39 -0.02 -0.52 16 44 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.07 1.27 7.57 -2.39 -0.02 1.25 16 Total: -1.00 -85.17 389.80 -0.60 -85.77 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: 0.17 Total: 9.23 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: 9.34 Total: 0.83 kcal Atomic # 7 Polarization: -98.29 SS G_CDS: -10.91 Total: -109.20 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.05 Total: -23.47 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.90 Total: 46.83 kcal Atomic # 16 Polarization: -8.95 SS G_CDS: -1.05 Total: -10.00 kcal Total: -85.17 -0.60 -85.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717541691.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.444 kcal (2) G-P(sol) polarization free energy of solvation -85.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds