Wall clock time and date at job start Sat Apr 11 2020 05:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30634 * 1 3 3 Si 1.86799 * 119.99988 * 2 1 4 4 H 1.48504 * 109.47024 * 90.00216 * 3 2 1 5 5 H 1.48500 * 109.47397 * 210.00286 * 3 2 1 6 6 H 1.48506 * 109.47392 * 330.00331 * 3 2 1 7 7 C 1.40264 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00287 * 160.62377 * 7 2 1 9 9 C 1.40894 * 120.00175 * 340.62128 * 7 2 1 10 10 C 1.40704 * 120.32613 * 325.76889 * 9 7 2 11 11 C 1.37593 * 119.88420 * 179.97438 * 10 9 7 12 12 C 1.38831 * 120.56795 * 0.02562 * 11 10 9 13 13 C 1.38223 * 120.67558 * 0.02562 * 12 11 10 14 14 C 1.39229 * 120.09204 * 359.69290 * 13 12 11 15 15 C 1.47435 * 120.28311 * 180.28311 * 14 13 12 16 16 O 1.21609 * 119.99968 * 176.46800 * 15 14 13 17 17 N 1.34776 * 119.99851 * 356.47248 * 15 14 13 18 18 C 1.46494 * 120.00009 * 180.02562 * 17 15 14 19 19 H 1.09007 * 109.47266 * 324.99806 * 18 17 15 20 20 C 1.53001 * 109.47160 * 84.99538 * 18 17 15 21 21 C 1.52995 * 109.47183 * 295.00245 * 20 18 17 22 22 O 1.42902 * 109.47404 * 179.97438 * 21 20 18 23 23 C 1.52998 * 109.47343 * 204.99929 * 18 17 15 24 24 C 1.50701 * 109.47124 * 64.99897 * 23 18 17 25 25 C 1.38232 * 119.99849 * 269.72512 * 24 23 18 26 26 C 1.38237 * 119.99896 * 179.76644 * 25 24 23 27 27 C 1.38237 * 119.99883 * 0.50887 * 26 25 24 28 28 C 1.38240 * 119.99740 * 359.74942 * 27 26 25 29 29 C 1.38230 * 119.99762 * 90.00115 * 24 23 18 30 30 H 0.96999 * 119.99807 * 174.87042 * 1 2 3 31 31 H 1.08000 * 120.05949 * 359.95080 * 10 9 7 32 32 H 1.08002 * 119.71987 * 179.97438 * 11 10 9 33 33 H 1.08001 * 119.66251 * 179.97438 * 12 11 10 34 34 H 1.08002 * 119.95074 * 179.97438 * 13 12 11 35 35 H 0.96994 * 120.00160 * 0.02562 * 17 15 14 36 36 H 1.09002 * 109.47011 * 55.00513 * 20 18 17 37 37 H 1.09001 * 109.47345 * 174.99909 * 20 18 17 38 38 H 1.08996 * 109.47569 * 299.99667 * 21 20 18 39 39 H 1.08999 * 109.47375 * 60.00142 * 21 20 18 40 40 H 0.96699 * 114.00419 * 179.97438 * 22 21 20 41 41 H 1.09006 * 109.47252 * 185.00140 * 23 18 17 42 42 H 1.09002 * 109.47081 * 304.99501 * 23 18 17 43 43 H 1.08002 * 120.00192 * 0.02562 * 25 24 23 44 44 H 1.07995 * 120.00152 * 180.23352 * 26 25 24 45 45 H 1.07995 * 120.00029 * 179.72312 * 27 26 25 46 46 H 1.07995 * 119.99495 * 179.97438 * 28 27 26 47 47 H 1.08001 * 120.00429 * 0.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.4879 2.0464 1.4001 5 1 3.5379 1.4402 -0.7001 6 1 1.4378 2.6528 -0.7000 7 6 2.0077 -1.2147 -0.0005 8 1 3.0418 -1.2411 -0.3108 9 6 1.3631 -2.4005 0.4038 10 6 0.3894 -2.3692 1.4190 11 6 -0.2347 -3.5327 1.8064 12 6 0.0879 -4.7412 1.2042 13 6 1.0415 -4.7990 0.2053 14 6 1.6862 -3.6378 -0.2124 15 6 2.6996 -3.6936 -1.2818 16 8 3.2129 -2.6684 -1.6871 17 7 3.0570 -4.8809 -1.8101 18 6 4.0643 -4.9365 -2.8723 19 1 3.9660 -4.0598 -3.5126 20 6 5.4616 -4.9588 -2.2494 21 6 5.7157 -3.6386 -1.5192 22 8 7.0205 -3.6596 -0.9369 23 6 3.8572 -6.2026 -3.7059 24 6 2.5312 -6.1241 -4.4177 25 6 1.3917 -6.6207 -3.8130 26 6 0.1746 -6.5443 -4.4639 27 6 0.0988 -5.9808 -5.7239 28 6 1.2393 -5.4889 -6.3308 29 6 2.4555 -5.5605 -5.6777 30 1 -0.4850 -0.8367 -0.0751 31 1 0.1327 -1.4337 1.8937 32 1 -0.9814 -3.5057 2.5863 33 1 -0.4109 -5.6457 1.5199 34 1 1.2837 -5.7456 -0.2549 35 1 2.6472 -5.6986 -1.4871 36 1 5.5306 -5.7847 -1.5414 37 1 6.2071 -5.0895 -3.0338 38 1 5.6467 -2.8127 -2.2272 39 1 4.9703 -3.5079 -0.7348 40 1 7.2502 -2.8521 -0.4571 41 1 4.6588 -6.2898 -4.4395 42 1 3.8673 -7.0742 -3.0515 43 1 1.4516 -7.0647 -2.8303 44 1 -0.7163 -6.9290 -3.9899 45 1 -0.8514 -5.9251 -6.2343 46 1 1.1801 -5.0490 -7.3153 47 1 3.3466 -5.1769 -6.1521 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868061656.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:05 Heat of formation + Delta-G solvation = -58.632238 kcal Electronic energy + Delta-G solvation = -29754.840197 eV Core-core repulsion = 25866.237190 eV Total energy + Delta-G solvation = -3888.603007 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.82909 -38.89206 -37.45784 -36.37422 -35.34096 -33.98430 -32.16545 -31.25189 -30.82536 -29.72493 -29.21718 -27.60996 -25.27914 -23.67555 -22.67359 -22.42194 -21.14205 -21.06540 -20.38801 -19.54086 -18.05510 -17.06945 -16.78848 -16.39861 -16.12289 -15.20293 -15.00947 -14.77227 -14.51530 -14.23423 -14.02788 -13.94243 -13.73378 -13.54784 -13.36588 -13.14752 -12.80394 -12.71508 -12.34945 -12.13198 -12.03700 -11.82151 -11.69276 -11.27525 -11.12127 -10.97336 -10.95895 -10.87376 -10.75274 -10.56886 -10.40795 -10.16435 -9.64233 -9.53996 -9.09928 -8.87759 -8.67072 -8.49520 -8.39890 -7.80753 -7.62531 -7.16303 -4.48144 1.39300 1.45272 2.22189 2.71311 3.17244 3.28104 3.37880 3.79504 3.86684 4.01280 4.03988 4.38829 4.61818 4.79430 4.83240 5.03491 5.11797 5.14053 5.25189 5.35622 5.43465 5.50332 5.53210 5.60774 5.67079 5.79905 5.83186 5.89475 6.02357 6.04828 6.08440 6.10862 6.15111 6.34527 6.37773 6.49605 6.51892 6.55287 6.63941 6.69778 6.97139 7.04460 7.11723 7.26098 7.47385 7.58877 7.70325 7.86734 7.89650 8.06855 8.19117 8.35523 8.71033 8.83803 9.33759 10.02504 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.008667 B = 0.004387 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3229.774708 B = 6380.784901 C = 7339.960620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.031 3.969 3 Si 1.071 2.929 4 H -0.275 1.275 5 H -0.273 1.273 6 H -0.277 1.277 7 C -0.465 4.465 8 H 0.105 0.895 9 C 0.122 3.878 10 C -0.201 4.201 11 C -0.076 4.076 12 C -0.259 4.259 13 C -0.042 4.042 14 C -0.264 4.264 15 C 0.567 3.433 16 O -0.535 6.535 17 N -0.740 5.740 18 C 0.157 3.843 19 H 0.088 0.912 20 C -0.126 4.126 21 C 0.078 3.922 22 O -0.588 6.588 23 C -0.087 4.087 24 C -0.075 4.075 25 C -0.108 4.108 26 C -0.115 4.115 27 C -0.126 4.126 28 C -0.119 4.119 29 C -0.117 4.117 30 H 0.298 0.702 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.389 0.611 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.050 0.950 39 H 0.060 0.940 40 H 0.377 0.623 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.118 0.882 46 H 0.119 0.881 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.335 -10.427 -7.509 13.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.191 4.191 3 Si 0.895 3.105 4 H -0.201 1.201 5 H -0.198 1.198 6 H -0.202 1.202 7 C -0.492 4.492 8 H 0.123 0.877 9 C 0.117 3.883 10 C -0.221 4.221 11 C -0.094 4.094 12 C -0.279 4.279 13 C -0.061 4.061 14 C -0.269 4.269 15 C 0.361 3.639 16 O -0.414 6.414 17 N -0.394 5.394 18 C 0.052 3.948 19 H 0.106 0.894 20 C -0.165 4.165 21 C 0.001 3.999 22 O -0.393 6.393 23 C -0.125 4.125 24 C -0.075 4.075 25 C -0.126 4.126 26 C -0.133 4.133 27 C -0.144 4.144 28 C -0.137 4.137 29 C -0.135 4.135 30 H 0.112 0.888 31 H 0.124 0.876 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.224 0.776 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.224 0.776 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.136 0.864 46 H 0.137 0.863 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.459 -8.613 -8.049 12.604 hybrid contribution -0.388 -1.652 0.416 1.747 sum 4.070 -10.265 -7.633 13.424 Atomic orbital electron populations 1.70359 1.08278 1.34341 1.28756 1.27233 0.95697 1.04645 0.91477 0.83538 0.75715 0.73280 0.77977 1.20075 1.19815 1.20167 1.21159 1.01658 0.91865 1.34550 0.87735 1.17499 0.89671 0.92062 0.89064 1.21249 1.03099 0.97070 1.00635 1.20739 0.97622 0.93220 0.97863 1.20235 1.05938 0.96663 1.05025 1.20694 0.94858 0.95330 0.95256 1.19395 1.07999 0.95234 1.04288 1.18291 0.81690 0.82168 0.81730 1.90671 1.55380 1.33115 1.62250 1.46071 1.43669 1.09536 1.40148 1.20677 0.87004 0.98060 0.89084 0.89420 1.21947 0.96475 0.97973 1.00066 1.22363 0.83262 0.96988 0.97301 1.86330 1.35083 1.43877 1.74057 1.20897 0.94695 0.98117 0.98754 1.19755 0.95138 0.98162 0.94479 1.20987 0.92355 1.00000 0.99294 1.21130 0.97641 0.99453 0.95126 1.21115 0.98300 0.99245 0.95744 1.21097 0.92844 0.99835 0.99959 1.21010 0.97928 0.99686 0.94881 0.88776 0.87619 0.88953 0.88983 0.89324 0.77617 0.91474 0.91167 0.93130 0.92216 0.77631 0.89652 0.90489 0.86447 0.86199 0.86399 0.86337 0.86247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.11 12.58 55.56 0.70 -20.41 16 2 C 0.03 0.80 5.04 -17.30 -0.09 0.71 16 3 Si 1.07 22.27 29.98 -169.99 -5.10 17.17 16 4 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.47 -12.42 7.65 -37.82 -0.29 -12.71 16 8 H 0.10 2.88 5.93 -52.49 -0.31 2.57 16 9 C 0.12 3.15 5.17 -106.54 -0.55 2.60 16 10 C -0.20 -4.94 7.87 -38.89 -0.31 -5.25 16 11 C -0.08 -1.65 10.01 -39.60 -0.40 -2.05 16 12 C -0.26 -5.34 10.03 -39.37 -0.39 -5.73 16 13 C -0.04 -0.87 9.52 -39.22 -0.37 -1.25 16 14 C -0.26 -6.20 5.92 -104.37 -0.62 -6.82 16 15 C 0.57 12.32 6.29 -12.52 -0.08 12.24 16 16 O -0.54 -13.04 10.70 5.27 0.06 -12.98 16 17 N -0.74 -12.29 4.44 -54.88 -0.24 -12.53 16 18 C 0.16 2.25 2.24 -67.93 -0.15 2.10 16 19 H 0.09 1.46 7.58 -51.93 -0.39 1.07 16 20 C -0.13 -1.79 5.26 -26.73 -0.14 -1.93 16 21 C 0.08 1.32 5.65 37.15 0.21 1.53 16 22 O -0.59 -9.30 13.66 -35.23 -0.48 -9.78 16 23 C -0.09 -0.96 4.89 -27.88 -0.14 -1.10 16 24 C -0.08 -0.94 4.95 -104.63 -0.52 -1.46 16 25 C -0.11 -1.37 9.11 -39.58 -0.36 -1.73 16 26 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 27 C -0.13 -1.52 10.05 -39.58 -0.40 -1.91 16 28 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 29 C -0.12 -1.43 9.70 -39.59 -0.38 -1.82 16 30 H 0.30 8.14 6.56 -40.82 -0.27 7.87 16 31 H 0.11 2.66 6.95 -52.49 -0.36 2.30 16 32 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 33 H 0.09 1.65 8.06 -52.49 -0.42 1.22 16 34 H 0.09 1.50 6.41 -52.49 -0.34 1.17 16 35 H 0.39 5.74 5.89 -40.82 -0.24 5.50 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.05 0.91 7.84 -51.93 -0.41 0.50 16 39 H 0.06 1.19 5.65 -51.93 -0.29 0.90 16 40 H 0.38 4.59 9.12 45.56 0.42 5.00 16 41 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 42 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 43 H 0.12 1.32 7.59 -52.49 -0.40 0.92 16 44 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 45 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 46 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 47 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 382.44 15.07 5.76 5.76 Total: -1.00 -30.51 382.44 -10.69 -41.20 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: -5.62 Total: 19.78 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: -5.77 Total: -28.21 kcal Atomic # 7 Polarization: -33.40 SS G_CDS: 0.46 Total: -32.94 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.42 Total: -22.76 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.10 Total: 17.17 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.51 -10.69 -41.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868061656.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.430 kcal (2) G-P(sol) polarization free energy of solvation -30.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds