Wall clock time and date at job start Sat Apr 11 2020 05:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30634 * 1 3 3 Si 1.86799 * 119.99988 * 2 1 4 4 H 1.48504 * 109.47024 * 90.00216 * 3 2 1 5 5 H 1.48500 * 109.47397 * 210.00286 * 3 2 1 6 6 H 1.48506 * 109.47392 * 330.00331 * 3 2 1 7 7 C 1.40264 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00287 * 160.62377 * 7 2 1 9 9 C 1.40894 * 120.00175 * 340.62128 * 7 2 1 10 10 C 1.40704 * 120.32613 * 325.76889 * 9 7 2 11 11 C 1.37593 * 119.88420 * 179.97438 * 10 9 7 12 12 C 1.38831 * 120.56795 * 0.02562 * 11 10 9 13 13 C 1.38223 * 120.67558 * 0.02562 * 12 11 10 14 14 C 1.39229 * 120.09204 * 359.69290 * 13 12 11 15 15 C 1.47435 * 120.28311 * 180.28311 * 14 13 12 16 16 O 1.21609 * 119.99968 * 176.46800 * 15 14 13 17 17 N 1.34776 * 119.99851 * 356.47248 * 15 14 13 18 18 C 1.46494 * 120.00009 * 180.02562 * 17 15 14 19 19 H 1.09007 * 109.47266 * 324.99806 * 18 17 15 20 20 C 1.53001 * 109.47160 * 84.99538 * 18 17 15 21 21 C 1.52995 * 109.47183 * 295.00245 * 20 18 17 22 22 O 1.42902 * 109.47404 * 179.97438 * 21 20 18 23 23 C 1.52998 * 109.47343 * 204.99929 * 18 17 15 24 24 C 1.50701 * 109.47124 * 64.99897 * 23 18 17 25 25 C 1.38232 * 119.99849 * 269.72512 * 24 23 18 26 26 C 1.38237 * 119.99896 * 179.76644 * 25 24 23 27 27 C 1.38237 * 119.99883 * 0.50887 * 26 25 24 28 28 C 1.38240 * 119.99740 * 359.74942 * 27 26 25 29 29 C 1.38230 * 119.99762 * 90.00115 * 24 23 18 30 30 H 0.96999 * 119.99807 * 174.87042 * 1 2 3 31 31 H 1.08000 * 120.05949 * 359.95080 * 10 9 7 32 32 H 1.08002 * 119.71987 * 179.97438 * 11 10 9 33 33 H 1.08001 * 119.66251 * 179.97438 * 12 11 10 34 34 H 1.08002 * 119.95074 * 179.97438 * 13 12 11 35 35 H 0.96994 * 120.00160 * 0.02562 * 17 15 14 36 36 H 1.09002 * 109.47011 * 55.00513 * 20 18 17 37 37 H 1.09001 * 109.47345 * 174.99909 * 20 18 17 38 38 H 1.08996 * 109.47569 * 299.99667 * 21 20 18 39 39 H 1.08999 * 109.47375 * 60.00142 * 21 20 18 40 40 H 0.96699 * 114.00419 * 179.97438 * 22 21 20 41 41 H 1.09006 * 109.47252 * 185.00140 * 23 18 17 42 42 H 1.09002 * 109.47081 * 304.99501 * 23 18 17 43 43 H 1.08002 * 120.00192 * 0.02562 * 25 24 23 44 44 H 1.07995 * 120.00152 * 180.23352 * 26 25 24 45 45 H 1.07995 * 120.00029 * 179.72312 * 27 26 25 46 46 H 1.07995 * 119.99495 * 179.97438 * 28 27 26 47 47 H 1.08001 * 120.00429 * 0.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.4879 2.0464 1.4001 5 1 3.5379 1.4402 -0.7001 6 1 1.4378 2.6528 -0.7000 7 6 2.0077 -1.2147 -0.0005 8 1 3.0418 -1.2411 -0.3108 9 6 1.3631 -2.4005 0.4038 10 6 0.3894 -2.3692 1.4190 11 6 -0.2347 -3.5327 1.8064 12 6 0.0879 -4.7412 1.2042 13 6 1.0415 -4.7990 0.2053 14 6 1.6862 -3.6378 -0.2124 15 6 2.6996 -3.6936 -1.2818 16 8 3.2129 -2.6684 -1.6871 17 7 3.0570 -4.8809 -1.8101 18 6 4.0643 -4.9365 -2.8723 19 1 3.9660 -4.0598 -3.5126 20 6 5.4616 -4.9588 -2.2494 21 6 5.7157 -3.6386 -1.5192 22 8 7.0205 -3.6596 -0.9369 23 6 3.8572 -6.2026 -3.7059 24 6 2.5312 -6.1241 -4.4177 25 6 1.3917 -6.6207 -3.8130 26 6 0.1746 -6.5443 -4.4639 27 6 0.0988 -5.9808 -5.7239 28 6 1.2393 -5.4889 -6.3308 29 6 2.4555 -5.5605 -5.6777 30 1 -0.4850 -0.8367 -0.0751 31 1 0.1327 -1.4337 1.8937 32 1 -0.9814 -3.5057 2.5863 33 1 -0.4109 -5.6457 1.5199 34 1 1.2837 -5.7456 -0.2549 35 1 2.6472 -5.6986 -1.4871 36 1 5.5306 -5.7847 -1.5414 37 1 6.2071 -5.0895 -3.0338 38 1 5.6467 -2.8127 -2.2272 39 1 4.9703 -3.5079 -0.7348 40 1 7.2502 -2.8521 -0.4571 41 1 4.6588 -6.2898 -4.4395 42 1 3.8673 -7.0742 -3.0515 43 1 1.4516 -7.0647 -2.8303 44 1 -0.7163 -6.9290 -3.9899 45 1 -0.8514 -5.9251 -6.2343 46 1 1.1801 -5.0490 -7.3153 47 1 3.3466 -5.1769 -6.1521 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868061656.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:04 Heat of formation + Delta-G solvation = -76.712296 kcal Electronic energy + Delta-G solvation = -29755.624207 eV Core-core repulsion = 25866.237190 eV Total energy + Delta-G solvation = -3889.387017 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.20227 -40.07908 -39.03616 -37.80538 -36.68991 -35.79346 -33.45879 -32.51140 -31.74461 -31.47605 -30.91018 -28.68940 -27.10785 -24.94655 -24.12630 -23.46183 -22.85804 -22.13985 -21.67578 -21.14353 -19.86976 -18.38683 -18.06613 -17.62994 -17.46835 -16.52196 -16.20053 -16.08026 -16.05014 -15.82461 -15.54480 -15.42179 -15.16548 -14.94430 -14.43412 -14.37926 -14.25080 -13.97719 -13.85892 -13.69798 -13.15435 -13.04631 -12.91890 -12.81184 -12.69761 -12.48208 -12.32331 -12.07059 -12.02181 -11.89718 -11.80067 -11.69667 -11.43653 -10.95226 -10.90481 -10.25621 -9.95180 -9.76550 -9.60497 -9.53855 -9.47187 -9.07737 -6.43428 0.43698 0.47319 0.53870 0.91671 1.44863 1.60961 1.74267 2.29644 2.32099 2.46569 2.76856 2.85987 3.25003 3.59124 3.84093 3.92566 4.02295 4.10039 4.17562 4.22099 4.28513 4.32301 4.36150 4.38402 4.46302 4.53503 4.63563 4.65794 4.77397 4.80604 4.88001 4.88899 4.93821 5.05380 5.16329 5.17260 5.20011 5.23477 5.44797 5.59278 5.63148 5.65611 5.67654 5.72273 5.78090 5.92355 5.99535 6.16207 6.22638 6.35348 6.72517 6.73599 6.89202 6.96785 7.69717 8.06310 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.008667 B = 0.004387 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3229.774708 B = 6380.784901 C = 7339.960620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C -0.003 4.003 3 Si 1.115 2.885 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.506 4.506 8 H 0.083 0.917 9 C 0.097 3.903 10 C -0.227 4.227 11 C -0.074 4.074 12 C -0.245 4.245 13 C -0.042 4.042 14 C -0.279 4.279 15 C 0.564 3.436 16 O -0.568 6.568 17 N -0.719 5.719 18 C 0.160 3.840 19 H 0.061 0.939 20 C -0.118 4.118 21 C 0.084 3.916 22 O -0.590 6.590 23 C -0.076 4.076 24 C -0.088 4.088 25 C -0.123 4.123 26 C -0.132 4.132 27 C -0.139 4.139 28 C -0.132 4.132 29 C -0.131 4.131 30 H 0.282 0.718 31 H 0.086 0.914 32 H 0.121 0.879 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.402 0.598 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.032 0.968 39 H 0.025 0.975 40 H 0.391 0.609 41 H 0.110 0.890 42 H 0.099 0.901 43 H 0.131 0.869 44 H 0.132 0.868 45 H 0.134 0.866 46 H 0.135 0.865 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.770 -13.444 -7.789 16.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.218 4.218 3 Si 0.933 3.067 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.534 4.534 8 H 0.101 0.899 9 C 0.093 3.907 10 C -0.247 4.247 11 C -0.093 4.093 12 C -0.264 4.264 13 C -0.061 4.061 14 C -0.284 4.284 15 C 0.357 3.643 16 O -0.449 6.449 17 N -0.373 5.373 18 C 0.056 3.944 19 H 0.079 0.921 20 C -0.157 4.157 21 C 0.007 3.993 22 O -0.398 6.398 23 C -0.113 4.113 24 C -0.089 4.089 25 C -0.140 4.140 26 C -0.150 4.150 27 C -0.157 4.157 28 C -0.150 4.150 29 C -0.149 4.149 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.139 0.861 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.238 0.762 36 H 0.096 0.904 37 H 0.112 0.888 38 H 0.050 0.950 39 H 0.043 0.957 40 H 0.239 0.761 41 H 0.128 0.872 42 H 0.117 0.883 43 H 0.149 0.851 44 H 0.150 0.850 45 H 0.151 0.849 46 H 0.153 0.847 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.899 -11.681 -8.321 15.155 hybrid contribution -0.532 -0.988 0.499 1.228 sum 4.367 -12.669 -7.822 15.516 Atomic orbital electron populations 1.70470 1.08721 1.33039 1.32360 1.28395 0.95822 1.07358 0.90247 0.83015 0.74578 0.70111 0.78977 1.18123 1.19734 1.19535 1.21068 1.01153 0.93342 1.37833 0.89867 1.17883 0.90256 0.93068 0.89470 1.21196 1.04476 0.97626 1.01354 1.21130 0.97317 0.92759 0.98085 1.20782 1.04686 0.97491 1.03434 1.21127 0.93929 0.96009 0.95004 1.19862 1.08421 0.95582 1.04536 1.18216 0.81351 0.83160 0.81607 1.90661 1.56376 1.34808 1.63060 1.45834 1.43420 1.08275 1.39786 1.20785 0.86403 0.99029 0.88225 0.92093 1.21917 0.96744 0.96381 1.00651 1.22202 0.82886 0.98257 0.96003 1.86299 1.34241 1.45065 1.74191 1.20873 0.94863 0.96638 0.98937 1.19970 0.95771 0.98351 0.94760 1.21261 0.92494 1.00263 1.00031 1.21426 0.98327 0.99721 0.95515 1.21429 0.99178 0.99073 0.95981 1.21415 0.92894 0.99813 1.00871 1.21326 0.98683 0.99661 0.95249 0.90594 0.89564 0.86120 0.84827 0.85003 0.76155 0.90379 0.88750 0.94979 0.95658 0.76055 0.87199 0.88277 0.85071 0.84967 0.84852 0.84699 0.84923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.13 12.58 21.88 0.28 -45.85 16 2 C 0.00 -0.17 5.04 85.36 0.43 0.26 16 3 Si 1.12 47.09 29.98 68.60 2.06 49.15 16 4 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 5 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 6 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 7 C -0.51 -28.69 7.65 23.41 0.18 -28.52 16 8 H 0.08 4.95 5.93 -2.91 -0.02 4.93 16 9 C 0.10 5.23 5.17 -21.11 -0.11 5.12 16 10 C -0.23 -11.47 7.87 22.72 0.18 -11.29 16 11 C -0.07 -3.13 10.01 22.26 0.22 -2.91 16 12 C -0.24 -9.20 10.03 22.41 0.22 -8.97 16 13 C -0.04 -1.61 9.52 22.50 0.21 -1.40 16 14 C -0.28 -13.13 5.92 -19.70 -0.12 -13.25 16 15 C 0.56 24.75 6.29 86.67 0.55 25.30 16 16 O -0.57 -28.95 10.70 -4.06 -0.04 -29.00 16 17 N -0.72 -22.77 4.44 -445.79 -1.98 -24.75 16 18 C 0.16 4.31 2.24 44.99 0.10 4.41 16 19 H 0.06 2.01 7.58 -2.38 -0.02 2.00 16 20 C -0.12 -3.11 5.26 30.59 0.16 -2.95 16 21 C 0.08 2.87 5.65 71.98 0.41 3.27 16 22 O -0.59 -18.24 13.66 -148.98 -2.04 -20.27 16 23 C -0.08 -1.42 4.89 29.85 0.15 -1.27 16 24 C -0.09 -2.00 4.95 -19.87 -0.10 -2.10 16 25 C -0.12 -2.80 9.11 22.27 0.20 -2.59 16 26 C -0.13 -3.05 10.05 22.27 0.22 -2.83 16 27 C -0.14 -3.15 10.05 22.27 0.22 -2.92 16 28 C -0.13 -2.97 10.05 22.27 0.22 -2.75 16 29 C -0.13 -3.00 9.70 22.27 0.22 -2.78 16 30 H 0.28 16.35 6.56 -92.71 -0.61 15.74 16 31 H 0.09 4.60 6.95 -2.91 -0.02 4.58 16 32 H 0.12 4.33 8.06 -2.91 -0.02 4.31 16 33 H 0.13 3.98 8.06 -2.91 -0.02 3.96 16 34 H 0.13 3.84 6.41 -2.91 -0.02 3.83 16 35 H 0.40 10.56 5.89 -92.71 -0.55 10.01 16 36 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.03 1.19 7.84 -2.39 -0.02 1.17 16 39 H 0.03 1.04 5.65 -2.39 -0.01 1.02 16 40 H 0.39 9.45 9.12 -74.06 -0.68 8.77 16 41 H 0.11 1.58 8.09 -2.38 -0.02 1.56 16 42 H 0.10 1.46 8.08 -2.39 -0.02 1.44 16 43 H 0.13 2.49 7.59 -2.91 -0.02 2.47 16 44 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 45 H 0.13 2.46 8.06 -2.91 -0.02 2.44 16 46 H 0.14 2.45 8.06 -2.91 -0.02 2.42 16 47 H 0.13 2.54 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -71.10 382.44 1.80 -69.31 By element: Atomic # 1 Polarization: 49.62 SS G_CDS: -0.06 Total: 49.57 kcal Atomic # 6 Polarization: -51.73 SS G_CDS: 3.58 Total: -48.15 kcal Atomic # 7 Polarization: -68.90 SS G_CDS: -1.70 Total: -70.61 kcal Atomic # 8 Polarization: -47.19 SS G_CDS: -2.08 Total: -49.27 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.06 Total: 49.15 kcal Total: -71.10 1.80 -69.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868061656.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.403 kcal (2) G-P(sol) polarization free energy of solvation -71.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds