Wall clock time and date at job start Sat Apr 11 2020 05:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30622 * 1 3 3 Si 1.86804 * 120.00077 * 2 1 4 4 H 1.48497 * 109.47200 * 239.99574 * 3 2 1 5 5 H 1.48503 * 109.46975 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46839 * 119.99608 * 3 2 1 7 7 C 1.40274 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00040 * 170.76100 * 7 2 1 9 9 C 1.40895 * 119.99800 * 350.77262 * 7 2 1 10 10 C 1.40700 * 120.32511 * 325.82253 * 9 7 2 11 11 C 1.37597 * 119.88175 * 180.02562 * 10 9 7 12 12 C 1.38825 * 120.57066 * 359.71680 * 11 10 9 13 13 C 1.38223 * 120.67167 * 0.56850 * 12 11 10 14 14 C 1.39220 * 120.09263 * 359.43706 * 13 12 11 15 15 C 1.47430 * 120.28270 * 180.30172 * 14 13 12 16 16 O 1.21614 * 120.00342 * 174.16080 * 15 14 13 17 17 N 1.34774 * 120.00106 * 354.15939 * 15 14 13 18 18 C 1.46503 * 120.00263 * 180.02562 * 17 15 14 19 19 H 1.08997 * 109.47330 * 34.99554 * 18 17 15 20 20 C 1.53000 * 109.46617 * 274.99823 * 18 17 15 21 21 C 1.53004 * 109.47359 * 65.00417 * 20 18 17 22 22 O 1.42894 * 109.47499 * 179.97438 * 21 20 18 23 23 C 1.53003 * 109.47206 * 155.00359 * 18 17 15 24 24 C 1.50705 * 109.46790 * 294.99394 * 23 18 17 25 25 C 1.38233 * 120.00119 * 269.72915 * 24 23 18 26 26 C 1.38236 * 119.99596 * 179.76435 * 25 24 23 27 27 C 1.38234 * 120.00252 * 0.51361 * 26 25 24 28 28 C 1.38234 * 119.99775 * 359.73844 * 27 26 25 29 29 C 1.38229 * 120.00068 * 0.02562 * 28 27 26 30 30 H 0.97001 * 120.00134 * 0.02562 * 1 2 3 31 31 H 1.08005 * 120.06619 * 0.02562 * 10 9 7 32 32 H 1.08004 * 119.71647 * 179.97438 * 11 10 9 33 33 H 1.08000 * 119.66806 * 180.29856 * 12 11 10 34 34 H 1.08008 * 119.95032 * 179.71936 * 13 12 11 35 35 H 0.97003 * 120.00025 * 0.02562 * 17 15 14 36 36 H 1.09001 * 109.47000 * 184.99730 * 20 18 17 37 37 H 1.08997 * 109.47599 * 304.99839 * 20 18 17 38 38 H 1.09001 * 109.46503 * 299.99616 * 21 20 18 39 39 H 1.08997 * 109.47237 * 59.99201 * 21 20 18 40 40 H 0.96695 * 114.00231 * 179.97438 * 22 21 20 41 41 H 1.08994 * 109.47672 * 54.99543 * 23 18 17 42 42 H 1.09001 * 109.46846 * 174.99929 * 23 18 17 43 43 H 1.08000 * 120.00357 * 0.02562 * 25 24 23 44 44 H 1.08006 * 119.99519 * 180.22782 * 26 25 24 45 45 H 1.08003 * 119.99956 * 179.72537 * 27 26 25 46 46 H 1.08003 * 119.99832 * 179.97438 * 28 27 26 47 47 H 1.08007 * 119.99877 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0941 1.6964 -1.2124 5 1 1.2752 2.7465 0.0006 6 1 3.0939 1.6964 1.2125 7 6 2.0076 -1.2148 0.0005 8 1 3.0771 -1.2209 -0.1496 9 6 1.3168 -2.4270 0.1967 10 6 0.1988 -2.4775 1.0494 11 6 -0.4688 -3.6664 1.2348 12 6 -0.0526 -4.8190 0.5825 13 6 1.0463 -4.7971 -0.2557 14 6 1.7422 -3.6094 -0.4634 15 6 2.9108 -3.5798 -1.3617 16 8 3.4503 -2.5217 -1.6232 17 7 3.3813 -4.7255 -1.8933 18 6 4.5429 -4.6962 -2.7856 19 1 5.2348 -3.9211 -2.4561 20 6 4.0819 -4.3951 -4.2131 21 6 3.4911 -2.9849 -4.2715 22 8 3.0610 -2.7035 -5.6048 23 6 5.2458 -6.0548 -2.7526 24 6 5.8073 -6.2966 -1.3751 25 6 7.0930 -5.8895 -1.0715 26 6 7.6062 -6.1069 0.1935 27 6 6.8375 -6.7408 1.1517 28 6 5.5537 -7.1525 0.8465 29 6 5.0387 -6.9308 -0.4170 30 1 -0.4850 0.8400 -0.0004 31 1 -0.1350 -1.5848 1.5575 32 1 -1.3265 -3.7022 1.8902 33 1 -0.5902 -5.7432 0.7349 34 1 1.3626 -5.7018 -0.7538 35 1 2.9509 -5.5694 -1.6851 36 1 4.9328 -4.4608 -4.8911 37 1 3.3236 -5.1194 -4.5104 38 1 2.6402 -2.9193 -3.5934 39 1 4.2494 -2.2607 -3.9741 40 1 2.6745 -1.8241 -5.7160 41 1 4.5303 -6.8401 -2.9962 42 1 6.0560 -6.0625 -3.4817 43 1 7.6950 -5.3979 -1.8214 44 1 8.6094 -5.7856 0.4317 45 1 7.2401 -6.9146 2.1387 46 1 4.9533 -7.6481 1.5951 47 1 4.0358 -7.2528 -0.6555 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868061657.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:09 Heat of formation + Delta-G solvation = -52.796046 kcal Electronic energy + Delta-G solvation = -29691.832613 eV Core-core repulsion = 25803.482682 eV Total energy + Delta-G solvation = -3888.349931 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.77963 -38.83073 -37.28035 -36.27516 -35.28567 -33.74156 -32.13509 -31.19101 -30.80530 -29.85491 -29.19690 -27.57072 -25.43809 -23.62181 -22.61989 -22.32016 -21.10521 -21.02756 -20.26241 -19.42606 -17.49651 -16.99775 -16.76390 -16.28589 -16.05300 -15.24554 -15.17179 -14.97029 -14.41118 -14.27679 -13.95901 -13.78467 -13.64680 -13.38255 -13.24962 -12.96670 -12.77245 -12.71457 -12.41984 -12.00821 -11.96712 -11.76882 -11.59924 -11.20187 -11.12941 -11.01067 -10.95118 -10.83375 -10.71007 -10.55747 -10.49558 -10.07043 -9.69607 -9.47151 -9.27272 -8.86068 -8.64629 -8.47054 -8.28136 -7.59256 -7.36281 -6.80808 -4.39573 1.40867 1.46863 2.35663 2.81106 3.07496 3.13230 3.23149 3.81433 3.92082 3.95696 4.14864 4.44161 4.67277 4.82367 4.85391 5.04975 5.14186 5.17841 5.28839 5.40290 5.51486 5.55081 5.63474 5.64560 5.70196 5.85192 5.93197 5.97822 6.07330 6.07971 6.14467 6.17360 6.28159 6.42239 6.46052 6.51212 6.56697 6.61960 6.66995 6.94681 7.06035 7.08950 7.16282 7.23890 7.45554 7.61663 7.88022 7.96059 7.97584 8.16830 8.38025 8.65483 8.81636 8.88911 9.40356 10.14528 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.008947 B = 0.004287 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3128.801524 B = 6529.088311 C = 7405.405663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.070 3.930 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.416 4.416 8 H 0.105 0.895 9 C 0.147 3.853 10 C -0.148 4.148 11 C -0.096 4.096 12 C -0.245 4.245 13 C -0.057 4.057 14 C -0.261 4.261 15 C 0.568 3.432 16 O -0.536 6.536 17 N -0.740 5.740 18 C 0.158 3.842 19 H 0.088 0.912 20 C -0.126 4.126 21 C 0.078 3.922 22 O -0.588 6.588 23 C -0.087 4.087 24 C -0.075 4.075 25 C -0.117 4.117 26 C -0.120 4.120 27 C -0.126 4.126 28 C -0.115 4.115 29 C -0.107 4.107 30 H 0.282 0.718 31 H 0.117 0.883 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.390 0.610 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.050 0.950 40 H 0.377 0.623 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.118 0.882 46 H 0.120 0.880 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.020 -10.207 -2.460 13.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.148 4.148 3 Si 0.739 3.261 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.444 4.444 8 H 0.122 0.878 9 C 0.143 3.857 10 C -0.167 4.167 11 C -0.115 4.115 12 C -0.265 4.265 13 C -0.076 4.076 14 C -0.266 4.266 15 C 0.362 3.638 16 O -0.415 6.415 17 N -0.394 5.394 18 C 0.052 3.948 19 H 0.106 0.894 20 C -0.165 4.165 21 C 0.000 4.000 22 O -0.394 6.394 23 C -0.125 4.125 24 C -0.075 4.075 25 C -0.135 4.135 26 C -0.138 4.138 27 C -0.145 4.145 28 C -0.133 4.133 29 C -0.125 4.125 30 H 0.093 0.907 31 H 0.134 0.866 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.224 0.776 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.224 0.776 41 H 0.095 0.905 42 H 0.103 0.897 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.136 0.864 46 H 0.138 0.862 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 9.447 -9.866 -2.755 13.934 hybrid contribution -0.310 0.862 0.261 0.953 sum 9.136 -9.004 -2.495 13.068 Atomic orbital electron populations 1.69706 1.07725 1.29623 1.34825 1.26099 0.94756 1.01665 0.92277 0.86248 0.79995 0.79587 0.80259 1.18688 1.20486 1.18824 1.20115 0.97305 0.89402 1.37587 0.87769 1.17462 0.89928 0.91316 0.87014 1.21354 0.98616 0.96291 1.00477 1.20796 0.98252 0.93616 0.98806 1.20271 1.01787 0.97371 1.07048 1.20626 0.95118 0.95121 0.96694 1.19457 1.02697 0.96070 1.08336 1.18344 0.83641 0.82547 0.79248 1.90670 1.59775 1.29651 1.61437 1.46093 1.32492 1.10166 1.50693 1.20672 0.88554 0.96678 0.88902 0.89440 1.21954 1.00997 0.96978 0.96561 1.22370 0.99431 0.95759 0.82390 1.86316 1.83375 1.38902 1.30821 1.20897 1.00344 0.97323 0.93911 1.19764 0.94080 0.97863 0.95771 1.21011 0.95375 1.00202 0.96961 1.21089 0.99829 0.99285 0.93593 1.21107 0.94808 0.99363 0.99173 1.21130 0.95630 0.99972 0.96615 1.20999 0.99175 0.99012 0.93336 0.90700 0.86556 0.89170 0.89204 0.89462 0.77565 0.91263 0.91481 0.91979 0.93213 0.77624 0.90476 0.89701 0.86282 0.86393 0.86440 0.86187 0.86360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.31 11.14 55.56 0.62 -19.69 16 2 C 0.07 1.77 5.25 -17.30 -0.09 1.68 16 3 Si 0.91 19.41 29.57 -169.99 -5.03 14.38 16 4 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 7 C -0.42 -11.14 7.68 -37.81 -0.29 -11.43 16 8 H 0.10 2.89 5.92 -52.49 -0.31 2.58 16 9 C 0.15 3.85 5.51 -106.54 -0.59 3.26 16 10 C -0.15 -3.71 8.62 -38.89 -0.34 -4.05 16 11 C -0.10 -2.14 10.01 -39.60 -0.40 -2.53 16 12 C -0.25 -5.13 10.03 -39.37 -0.39 -5.53 16 13 C -0.06 -1.18 9.52 -39.22 -0.37 -1.55 16 14 C -0.26 -6.15 5.92 -104.37 -0.62 -6.77 16 15 C 0.57 12.33 6.28 -12.52 -0.08 12.25 16 16 O -0.54 -13.01 10.73 5.27 0.06 -12.96 16 17 N -0.74 -12.29 4.43 -54.88 -0.24 -12.54 16 18 C 0.16 2.25 2.24 -67.93 -0.15 2.10 16 19 H 0.09 1.44 7.58 -51.93 -0.39 1.05 16 20 C -0.13 -1.82 5.26 -26.73 -0.14 -1.97 16 21 C 0.08 1.36 5.65 37.16 0.21 1.57 16 22 O -0.59 -9.72 13.66 -35.23 -0.48 -10.20 16 23 C -0.09 -0.96 4.89 -27.88 -0.14 -1.09 16 24 C -0.07 -0.92 4.95 -104.62 -0.52 -1.43 16 25 C -0.12 -1.40 9.70 -39.58 -0.38 -1.79 16 26 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 27 C -0.13 -1.47 10.05 -39.58 -0.40 -1.87 16 28 C -0.12 -1.40 10.05 -39.59 -0.40 -1.79 16 29 C -0.11 -1.33 9.10 -39.59 -0.36 -1.69 16 30 H 0.28 6.61 8.29 -40.82 -0.34 6.27 16 31 H 0.12 2.99 6.59 -52.48 -0.35 2.65 16 32 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 33 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 34 H 0.09 1.50 6.44 -52.48 -0.34 1.16 16 35 H 0.39 5.75 5.89 -40.82 -0.24 5.51 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.06 1.29 5.64 -51.93 -0.29 1.00 16 39 H 0.05 0.91 7.84 -51.93 -0.41 0.51 16 40 H 0.38 4.93 9.12 45.56 0.42 5.34 16 41 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 42 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 43 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 44 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 45 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 46 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 47 H 0.12 1.32 7.57 -52.48 -0.40 0.92 16 LS Contribution 383.30 15.07 5.78 5.78 Total: -1.00 -30.25 383.30 -10.81 -41.06 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: -5.67 Total: 18.57 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -5.84 Total: -24.40 kcal Atomic # 7 Polarization: -32.60 SS G_CDS: 0.38 Total: -32.22 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.42 Total: -23.16 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.25 -10.81 -41.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868061657.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.737 kcal (2) G-P(sol) polarization free energy of solvation -30.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds