Wall clock time and date at job start Sat Apr 11 2020 05:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30622 * 1 3 3 Si 1.86804 * 120.00077 * 2 1 4 4 H 1.48497 * 109.47200 * 239.99574 * 3 2 1 5 5 H 1.48503 * 109.46975 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46839 * 119.99608 * 3 2 1 7 7 C 1.40274 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00040 * 170.76100 * 7 2 1 9 9 C 1.40895 * 119.99800 * 350.77262 * 7 2 1 10 10 C 1.40700 * 120.32511 * 325.82253 * 9 7 2 11 11 C 1.37597 * 119.88175 * 180.02562 * 10 9 7 12 12 C 1.38825 * 120.57066 * 359.71680 * 11 10 9 13 13 C 1.38223 * 120.67167 * 0.56850 * 12 11 10 14 14 C 1.39220 * 120.09263 * 359.43706 * 13 12 11 15 15 C 1.47430 * 120.28270 * 180.30172 * 14 13 12 16 16 O 1.21614 * 120.00342 * 174.16080 * 15 14 13 17 17 N 1.34774 * 120.00106 * 354.15939 * 15 14 13 18 18 C 1.46503 * 120.00263 * 180.02562 * 17 15 14 19 19 H 1.08997 * 109.47330 * 34.99554 * 18 17 15 20 20 C 1.53000 * 109.46617 * 274.99823 * 18 17 15 21 21 C 1.53004 * 109.47359 * 65.00417 * 20 18 17 22 22 O 1.42894 * 109.47499 * 179.97438 * 21 20 18 23 23 C 1.53003 * 109.47206 * 155.00359 * 18 17 15 24 24 C 1.50705 * 109.46790 * 294.99394 * 23 18 17 25 25 C 1.38233 * 120.00119 * 269.72915 * 24 23 18 26 26 C 1.38236 * 119.99596 * 179.76435 * 25 24 23 27 27 C 1.38234 * 120.00252 * 0.51361 * 26 25 24 28 28 C 1.38234 * 119.99775 * 359.73844 * 27 26 25 29 29 C 1.38229 * 120.00068 * 0.02562 * 28 27 26 30 30 H 0.97001 * 120.00134 * 0.02562 * 1 2 3 31 31 H 1.08005 * 120.06619 * 0.02562 * 10 9 7 32 32 H 1.08004 * 119.71647 * 179.97438 * 11 10 9 33 33 H 1.08000 * 119.66806 * 180.29856 * 12 11 10 34 34 H 1.08008 * 119.95032 * 179.71936 * 13 12 11 35 35 H 0.97003 * 120.00025 * 0.02562 * 17 15 14 36 36 H 1.09001 * 109.47000 * 184.99730 * 20 18 17 37 37 H 1.08997 * 109.47599 * 304.99839 * 20 18 17 38 38 H 1.09001 * 109.46503 * 299.99616 * 21 20 18 39 39 H 1.08997 * 109.47237 * 59.99201 * 21 20 18 40 40 H 0.96695 * 114.00231 * 179.97438 * 22 21 20 41 41 H 1.08994 * 109.47672 * 54.99543 * 23 18 17 42 42 H 1.09001 * 109.46846 * 174.99929 * 23 18 17 43 43 H 1.08000 * 120.00357 * 0.02562 * 25 24 23 44 44 H 1.08006 * 119.99519 * 180.22782 * 26 25 24 45 45 H 1.08003 * 119.99956 * 179.72537 * 27 26 25 46 46 H 1.08003 * 119.99832 * 179.97438 * 28 27 26 47 47 H 1.08007 * 119.99877 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0941 1.6964 -1.2124 5 1 1.2752 2.7465 0.0006 6 1 3.0939 1.6964 1.2125 7 6 2.0076 -1.2148 0.0005 8 1 3.0771 -1.2209 -0.1496 9 6 1.3168 -2.4270 0.1967 10 6 0.1988 -2.4775 1.0494 11 6 -0.4688 -3.6664 1.2348 12 6 -0.0526 -4.8190 0.5825 13 6 1.0463 -4.7971 -0.2557 14 6 1.7422 -3.6094 -0.4634 15 6 2.9108 -3.5798 -1.3617 16 8 3.4503 -2.5217 -1.6232 17 7 3.3813 -4.7255 -1.8933 18 6 4.5429 -4.6962 -2.7856 19 1 5.2348 -3.9211 -2.4561 20 6 4.0819 -4.3951 -4.2131 21 6 3.4911 -2.9849 -4.2715 22 8 3.0610 -2.7035 -5.6048 23 6 5.2458 -6.0548 -2.7526 24 6 5.8073 -6.2966 -1.3751 25 6 7.0930 -5.8895 -1.0715 26 6 7.6062 -6.1069 0.1935 27 6 6.8375 -6.7408 1.1517 28 6 5.5537 -7.1525 0.8465 29 6 5.0387 -6.9308 -0.4170 30 1 -0.4850 0.8400 -0.0004 31 1 -0.1350 -1.5848 1.5575 32 1 -1.3265 -3.7022 1.8902 33 1 -0.5902 -5.7432 0.7349 34 1 1.3626 -5.7018 -0.7538 35 1 2.9509 -5.5694 -1.6851 36 1 4.9328 -4.4608 -4.8911 37 1 3.3236 -5.1194 -4.5104 38 1 2.6402 -2.9193 -3.5934 39 1 4.2494 -2.2607 -3.9741 40 1 2.6745 -1.8241 -5.7160 41 1 4.5303 -6.8401 -2.9962 42 1 6.0560 -6.0625 -3.4817 43 1 7.6950 -5.3979 -1.8214 44 1 8.6094 -5.7856 0.4317 45 1 7.2401 -6.9146 2.1387 46 1 4.9533 -7.6481 1.5951 47 1 4.0358 -7.2528 -0.6555 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868061657.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:08 Heat of formation + Delta-G solvation = -70.579745 kcal Electronic energy + Delta-G solvation = -29692.603772 eV Core-core repulsion = 25803.482682 eV Total energy + Delta-G solvation = -3889.121090 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.12022 -40.00341 -38.85605 -37.75382 -36.63689 -35.55727 -33.40881 -32.45406 -31.71047 -31.64812 -30.85587 -28.65324 -27.26139 -24.87394 -24.01376 -23.41719 -22.81214 -22.07145 -21.56719 -21.03743 -19.30838 -18.35600 -17.97510 -17.57732 -17.41754 -17.04098 -16.14909 -16.04880 -15.91401 -15.82513 -15.36191 -15.27914 -14.99522 -14.82506 -14.47570 -14.32527 -14.20190 -13.94458 -13.81162 -13.44893 -13.17189 -13.02309 -12.86436 -12.80789 -12.78212 -12.46773 -12.29220 -12.28043 -11.99800 -11.84890 -11.74648 -11.67143 -11.45811 -11.12845 -10.88206 -10.17456 -9.88344 -9.72043 -9.52274 -9.35634 -9.19135 -8.65532 -6.33071 0.51248 0.56511 0.58329 1.03547 1.32318 1.43117 1.50119 2.19889 2.42799 2.52965 2.82384 2.89894 3.27584 3.75806 3.88284 3.96715 4.06192 4.13485 4.21664 4.30444 4.36224 4.40057 4.41953 4.43548 4.57335 4.60416 4.68436 4.69623 4.82425 4.87606 4.94243 4.97321 5.07901 5.13015 5.20993 5.23716 5.25984 5.28964 5.37205 5.63337 5.64801 5.68487 5.72034 5.83288 5.86324 6.08736 6.13532 6.20166 6.36742 6.67949 6.73735 6.84700 6.96516 7.05606 7.76797 8.31804 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.008947 B = 0.004287 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3128.801524 B = 6529.088311 C = 7405.405663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.034 3.966 3 Si 0.974 3.026 4 H -0.272 1.272 5 H -0.262 1.262 6 H -0.260 1.260 7 C -0.453 4.453 8 H 0.082 0.918 9 C 0.116 3.884 10 C -0.179 4.179 11 C -0.095 4.095 12 C -0.237 4.237 13 C -0.055 4.055 14 C -0.276 4.276 15 C 0.565 3.435 16 O -0.569 6.569 17 N -0.720 5.720 18 C 0.161 3.839 19 H 0.063 0.937 20 C -0.118 4.118 21 C 0.083 3.917 22 O -0.591 6.591 23 C -0.076 4.076 24 C -0.088 4.088 25 C -0.131 4.131 26 C -0.132 4.132 27 C -0.138 4.138 28 C -0.131 4.131 29 C -0.122 4.122 30 H 0.287 0.713 31 H 0.097 0.903 32 H 0.116 0.884 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.402 0.598 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.025 0.975 39 H 0.032 0.968 40 H 0.390 0.610 41 H 0.098 0.902 42 H 0.109 0.891 43 H 0.132 0.868 44 H 0.135 0.865 45 H 0.134 0.866 46 H 0.132 0.868 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.395 -12.825 -3.223 16.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.181 4.181 3 Si 0.795 3.205 4 H -0.197 1.197 5 H -0.186 1.186 6 H -0.185 1.185 7 C -0.482 4.482 8 H 0.100 0.900 9 C 0.112 3.888 10 C -0.198 4.198 11 C -0.113 4.113 12 C -0.256 4.256 13 C -0.073 4.073 14 C -0.281 4.281 15 C 0.358 3.642 16 O -0.450 6.450 17 N -0.374 5.374 18 C 0.056 3.944 19 H 0.081 0.919 20 C -0.157 4.157 21 C 0.006 3.994 22 O -0.399 6.399 23 C -0.113 4.113 24 C -0.088 4.088 25 C -0.149 4.149 26 C -0.150 4.150 27 C -0.156 4.156 28 C -0.149 4.149 29 C -0.140 4.140 30 H 0.098 0.902 31 H 0.115 0.885 32 H 0.134 0.866 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.239 0.761 36 H 0.112 0.888 37 H 0.095 0.905 38 H 0.043 0.957 39 H 0.050 0.950 40 H 0.238 0.762 41 H 0.116 0.884 42 H 0.127 0.873 43 H 0.150 0.850 44 H 0.153 0.847 45 H 0.152 0.848 46 H 0.150 0.850 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 9.814 -12.526 -3.524 16.298 hybrid contribution -0.429 1.473 0.484 1.609 sum 9.385 -11.053 -3.040 14.815 Atomic orbital electron populations 1.69741 1.08581 1.30478 1.36333 1.26726 0.95510 1.04114 0.91741 0.85383 0.78917 0.76495 0.79664 1.19689 1.18552 1.18475 1.20048 0.96506 0.90988 1.40708 0.89993 1.17834 0.90834 0.92322 0.87789 1.21285 0.99803 0.97023 1.01693 1.21155 0.98381 0.93096 0.98678 1.20772 1.01326 0.98201 1.05305 1.21047 0.94443 0.95547 0.96284 1.19892 1.03571 0.96441 1.08175 1.18240 0.83293 0.83384 0.79254 1.90656 1.60603 1.31309 1.62405 1.45852 1.32652 1.09040 1.49830 1.20779 0.87195 0.98315 0.88118 0.91912 1.21926 1.01993 0.94845 0.96934 1.22222 0.97551 0.97585 0.82054 1.86289 1.83412 1.40153 1.30006 1.20867 1.01156 0.95284 0.94003 1.19959 0.94339 0.98134 0.96389 1.21318 0.95779 1.00220 0.97588 1.21408 1.00795 0.99147 0.93628 1.21421 0.94908 0.99149 1.00092 1.21419 0.96132 1.00291 0.97100 1.21260 0.99871 0.99284 0.93564 0.90190 0.88489 0.86588 0.85214 0.85212 0.76138 0.88796 0.90464 0.95660 0.94952 0.76178 0.88376 0.87272 0.84967 0.84696 0.84805 0.84979 0.85170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.20 11.14 21.88 0.24 -43.95 16 2 C 0.03 1.79 5.25 85.37 0.45 2.23 16 3 Si 0.97 41.69 29.57 68.60 2.03 43.72 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 6 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 7 C -0.45 -25.78 7.68 23.42 0.18 -25.60 16 8 H 0.08 4.89 5.92 -2.91 -0.02 4.87 16 9 C 0.12 6.32 5.51 -21.11 -0.12 6.20 16 10 C -0.18 -9.22 8.62 22.72 0.20 -9.03 16 11 C -0.09 -4.11 10.01 22.26 0.22 -3.88 16 12 C -0.24 -9.17 10.03 22.41 0.22 -8.95 16 13 C -0.05 -2.14 9.52 22.50 0.21 -1.92 16 14 C -0.28 -13.11 5.92 -19.70 -0.12 -13.23 16 15 C 0.57 24.88 6.28 86.67 0.54 25.43 16 16 O -0.57 -28.90 10.73 -4.07 -0.04 -28.95 16 17 N -0.72 -22.93 4.43 -445.78 -1.97 -24.90 16 18 C 0.16 4.33 2.24 44.99 0.10 4.44 16 19 H 0.06 2.05 7.58 -2.39 -0.02 2.03 16 20 C -0.12 -3.18 5.26 30.60 0.16 -3.02 16 21 C 0.08 2.94 5.65 71.98 0.41 3.35 16 22 O -0.59 -19.12 13.66 -148.98 -2.03 -21.15 16 23 C -0.08 -1.42 4.89 29.85 0.15 -1.27 16 24 C -0.09 -1.96 4.95 -19.86 -0.10 -2.06 16 25 C -0.13 -2.92 9.70 22.27 0.22 -2.70 16 26 C -0.13 -2.86 10.05 22.27 0.22 -2.64 16 27 C -0.14 -3.01 10.05 22.27 0.22 -2.79 16 28 C -0.13 -2.97 10.05 22.27 0.22 -2.74 16 29 C -0.12 -2.75 9.10 22.27 0.20 -2.55 16 30 H 0.29 14.01 8.29 -92.71 -0.77 13.24 16 31 H 0.10 5.27 6.59 -2.91 -0.02 5.25 16 32 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 33 H 0.13 4.03 8.06 -2.91 -0.02 4.00 16 34 H 0.13 3.89 6.44 -2.91 -0.02 3.87 16 35 H 0.40 10.69 5.89 -92.71 -0.55 10.14 16 36 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.08 1.95 8.14 -2.39 -0.02 1.94 16 38 H 0.03 1.08 5.64 -2.39 -0.01 1.06 16 39 H 0.03 1.23 7.84 -2.39 -0.02 1.21 16 40 H 0.39 10.15 9.12 -74.06 -0.68 9.48 16 41 H 0.10 1.47 8.08 -2.39 -0.02 1.45 16 42 H 0.11 1.57 8.08 -2.39 -0.02 1.55 16 43 H 0.13 2.47 8.06 -2.91 -0.02 2.44 16 44 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 45 H 0.13 2.35 8.06 -2.91 -0.02 2.32 16 46 H 0.13 2.52 8.06 -2.91 -0.02 2.50 16 47 H 0.13 2.49 7.57 -2.91 -0.02 2.47 16 Total: -1.00 -69.93 383.30 1.61 -68.32 By element: Atomic # 1 Polarization: 47.87 SS G_CDS: -0.22 Total: 47.65 kcal Atomic # 6 Polarization: -44.35 SS G_CDS: 3.60 Total: -40.74 kcal Atomic # 7 Polarization: -67.12 SS G_CDS: -1.73 Total: -68.85 kcal Atomic # 8 Polarization: -48.02 SS G_CDS: -2.08 Total: -50.10 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -69.93 1.61 -68.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868061657.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.256 kcal (2) G-P(sol) polarization free energy of solvation -69.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds