Wall clock time and date at job start Sat Apr 11 2020 05:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86806 * 120.00099 * 2 1 4 4 H 1.48500 * 109.46917 * 85.01253 * 3 2 1 5 5 H 1.48499 * 109.46991 * 205.01003 * 3 2 1 6 6 H 1.48496 * 109.46864 * 325.01250 * 3 2 1 7 7 C 1.40028 * 119.99779 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99566 * 189.40925 * 7 2 1 9 9 C 1.41336 * 120.00398 * 9.40739 * 7 2 1 10 10 C 1.40603 * 119.79199 * 190.17663 * 9 7 2 11 11 C 1.38309 * 119.13366 * 179.76438 * 10 9 7 12 12 C 1.38695 * 118.66139 * 0.50333 * 11 10 9 13 13 C 1.39627 * 119.50044 * 359.74366 * 12 11 10 14 14 N 1.39276 * 119.57695 * 180.02562 * 13 12 11 15 15 C 1.34778 * 119.99970 * 175.16768 * 14 13 12 16 16 O 1.21272 * 120.00169 * 3.85733 * 15 14 13 17 17 C 1.50706 * 119.99571 * 183.85700 * 15 14 13 18 18 C 1.53118 * 109.52327 * 299.68105 * 17 15 14 19 19 C 1.53036 * 109.28094 * 182.44206 * 18 17 15 20 20 N 1.46853 * 109.51791 * 59.17719 * 19 18 17 21 21 C 1.46904 * 110.99470 * 174.16101 * 20 19 18 22 22 C 1.53000 * 109.46980 * 200.98155 * 21 20 19 23 23 F 1.39898 * 109.47141 * 293.89041 * 22 21 20 24 24 F 1.39898 * 109.47077 * 53.88699 * 22 21 20 25 25 C 1.46834 * 111.20183 * 298.25964 * 20 19 18 26 26 C 1.53041 * 109.52574 * 61.74476 * 25 20 19 27 27 N 1.31930 * 120.85187 * 359.97438 * 13 12 11 28 28 H 0.97006 * 119.99749 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.43332 * 0.02562 * 10 9 7 30 30 H 1.07995 * 120.66864 * 180.21837 * 11 10 9 31 31 H 1.08007 * 120.24918 * 179.76244 * 12 11 10 32 32 H 0.97004 * 119.99850 * 355.17624 * 14 13 12 33 33 H 1.09000 * 109.52054 * 59.87465 * 17 15 14 34 34 H 1.09004 * 109.50322 * 302.38820 * 18 17 15 35 35 H 1.09002 * 109.50101 * 62.49814 * 18 17 15 36 36 H 1.08998 * 109.46100 * 299.17256 * 19 18 17 37 37 H 1.08990 * 109.45700 * 179.18951 * 19 18 17 38 38 H 1.08993 * 109.47326 * 320.98095 * 21 20 19 39 39 H 1.08993 * 109.47012 * 80.98329 * 21 20 19 40 40 H 1.08997 * 109.47204 * 173.88697 * 22 21 20 41 41 H 1.09001 * 109.46720 * 301.72718 * 25 20 19 42 42 H 1.09009 * 109.45711 * 181.75301 * 25 20 19 43 43 H 1.09002 * 109.50549 * 180.88100 * 26 25 20 44 44 H 1.08999 * 109.50257 * 60.76131 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.3835 2.1073 1.3948 5 1 3.5878 1.4120 -0.5919 6 1 1.4956 2.6199 -0.8028 7 6 2.0075 -1.2127 -0.0005 8 1 3.0766 -1.2190 0.1524 9 6 1.3151 -2.4284 -0.2011 10 6 1.9755 -3.6516 0.0103 11 6 1.2835 -4.8330 -0.1853 12 6 -0.0400 -4.7687 -0.5950 13 6 -0.6387 -3.5230 -0.7933 14 7 -1.9678 -3.4566 -1.2043 15 6 -2.5833 -2.2618 -1.3043 16 8 -1.9608 -1.2404 -1.1045 17 6 -4.0452 -2.1951 -1.6645 18 6 -4.2628 -2.8320 -3.0399 19 6 -5.7381 -2.7070 -3.4268 20 7 -6.1187 -1.2889 -3.4583 21 6 -7.4894 -1.1228 -3.9600 22 6 -7.6756 0.3073 -4.4708 23 9 -7.5867 1.2010 -3.3981 24 9 -6.6784 0.6018 -5.4068 25 6 -5.9630 -0.6679 -2.1369 26 6 -4.4943 -0.7321 -1.7114 27 7 0.0382 -2.4080 -0.5955 28 1 -0.4850 0.8401 0.0004 29 1 3.0084 -3.6683 0.3254 30 1 1.7654 -5.7864 -0.0267 31 1 -0.6034 -5.6755 -0.7592 32 1 -2.4505 -4.2703 -1.4183 33 1 -4.6293 -2.7318 -0.9169 34 1 -3.6478 -2.3195 -3.7796 35 1 -3.9847 -3.8852 -3.0013 36 1 -6.3515 -3.2313 -2.6941 37 1 -5.8936 -3.1467 -4.4119 38 1 -7.6659 -1.8253 -4.7744 39 1 -8.1971 -1.3157 -3.1539 40 1 -8.6544 0.4005 -4.9412 41 1 -6.5753 -1.2018 -1.4102 42 1 -6.2819 0.3734 -2.1853 43 1 -4.3817 -0.2850 -0.7237 44 1 -3.8830 -0.1865 -2.4303 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882473246.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:39 Heat of formation + Delta-G solvation = -106.425866 kcal Electronic energy + Delta-G solvation = -29859.176078 eV Core-core repulsion = 25446.563805 eV Total energy + Delta-G solvation = -4412.612273 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.75523 -47.78371 -41.30087 -39.98119 -38.83948 -35.95062 -34.95201 -34.75265 -32.24955 -31.85722 -31.06481 -29.99532 -27.53812 -26.00582 -24.27843 -23.70398 -23.14993 -22.77594 -21.32395 -20.47158 -19.57400 -18.51918 -18.15389 -17.98950 -17.68028 -17.26353 -16.56031 -16.42160 -16.27928 -15.87599 -15.76409 -15.50610 -15.24993 -14.85033 -14.78951 -14.62719 -14.34020 -14.29213 -14.15136 -13.71633 -13.62462 -13.33219 -13.17212 -12.94730 -12.91478 -12.72284 -12.60536 -12.40497 -12.32786 -12.18329 -11.86390 -11.81296 -11.56927 -11.41234 -11.19430 -10.85617 -10.50665 -9.93239 -9.31389 -9.08083 -8.81992 -8.18399 -6.40529 0.91225 1.23903 1.37281 1.49190 1.52503 2.16076 2.24549 2.34387 2.74135 2.96619 3.12360 3.51988 3.64701 3.69974 3.81472 3.86021 4.04586 4.14176 4.23842 4.26049 4.36326 4.42301 4.44378 4.60392 4.61361 4.69503 4.74628 4.79427 4.85536 4.91486 4.95621 4.97858 5.06659 5.13557 5.22269 5.28323 5.37383 5.68206 5.86040 5.92057 6.02473 6.06335 6.15191 6.37540 6.74685 6.85846 7.06811 7.71187 8.33525 8.53327 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013258 B = 0.003170 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.424408 B = 8830.908276 C =10528.960843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.703 5.703 2 C 0.019 3.981 3 Si 0.973 3.027 4 H -0.260 1.260 5 H -0.256 1.256 6 H -0.277 1.277 7 C -0.473 4.473 8 H 0.085 0.915 9 C 0.242 3.758 10 C -0.331 4.331 11 C -0.035 4.035 12 C -0.344 4.344 13 C 0.349 3.651 14 N -0.654 5.654 15 C 0.468 3.532 16 O -0.471 6.471 17 C -0.089 4.089 18 C -0.102 4.102 19 C 0.066 3.934 20 N -0.559 5.559 21 C 0.003 3.997 22 C 0.254 3.746 23 F -0.224 7.224 24 F -0.220 7.220 25 C 0.056 3.944 26 C -0.089 4.089 27 N -0.515 5.515 28 H 0.272 0.728 29 H 0.104 0.896 30 H 0.138 0.862 31 H 0.134 0.866 32 H 0.420 0.580 33 H 0.113 0.887 34 H 0.048 0.952 35 H 0.095 0.905 36 H 0.060 0.940 37 H 0.099 0.901 38 H 0.128 0.872 39 H 0.087 0.913 40 H 0.156 0.844 41 H 0.053 0.947 42 H 0.084 0.916 43 H 0.055 0.945 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.319 -5.531 -8.061 23.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.322 5.322 2 C -0.206 4.206 3 Si 0.794 3.206 4 H -0.185 1.185 5 H -0.179 1.179 6 H -0.203 1.203 7 C -0.503 4.503 8 H 0.103 0.897 9 C 0.116 3.884 10 C -0.354 4.354 11 C -0.059 4.059 12 C -0.369 4.369 13 C 0.110 3.890 14 N -0.303 5.303 15 C 0.252 3.748 16 O -0.338 6.338 17 C -0.111 4.111 18 C -0.141 4.141 19 C -0.060 4.060 20 N -0.285 5.285 21 C -0.125 4.125 22 C 0.201 3.799 23 F -0.205 7.205 24 F -0.202 7.202 25 C -0.072 4.072 26 C -0.128 4.128 27 N -0.235 5.235 28 H 0.082 0.918 29 H 0.122 0.878 30 H 0.156 0.844 31 H 0.152 0.848 32 H 0.258 0.742 33 H 0.131 0.869 34 H 0.067 0.933 35 H 0.114 0.886 36 H 0.078 0.922 37 H 0.117 0.883 38 H 0.146 0.854 39 H 0.105 0.895 40 H 0.173 0.827 41 H 0.071 0.929 42 H 0.102 0.898 43 H 0.074 0.926 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -21.184 -3.524 -8.348 23.040 hybrid contribution 0.675 -0.539 0.798 1.176 sum -20.509 -4.063 -7.550 22.229 Atomic orbital electron populations 1.70298 1.07846 1.28392 1.25621 1.26932 0.95752 1.04029 0.93904 0.85336 0.79219 0.76834 0.79168 1.18483 1.17930 1.20257 1.19847 0.95431 0.90940 1.44120 0.89656 1.18846 0.88024 0.93357 0.88173 1.21816 1.01235 0.93884 1.18431 1.21061 0.93583 0.97388 0.93859 1.20994 0.97859 0.95677 1.22393 1.19147 0.86172 0.90923 0.92747 1.43453 1.09498 1.10321 1.67027 1.21723 0.90675 0.83803 0.78562 1.91084 1.66216 1.33870 1.42667 1.21360 0.90503 0.98898 1.00344 1.21571 0.97679 1.01233 0.93573 1.22121 0.94291 0.86868 1.02768 1.61782 1.23735 1.16751 1.26212 1.23349 0.90420 0.95483 1.03275 1.22684 0.91990 0.87784 0.77478 1.92876 1.97126 1.71951 1.58585 1.92961 1.66405 1.94476 1.66326 1.22305 0.94918 1.00932 0.89007 1.21246 0.96158 0.94699 1.00660 1.68525 1.08314 1.26477 1.20135 0.91797 0.87807 0.84430 0.84813 0.74233 0.86871 0.93322 0.88620 0.92202 0.88271 0.85351 0.89525 0.82704 0.92866 0.89831 0.92645 0.94015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -42.06 9.54 21.84 0.21 -41.85 16 2 C 0.02 1.08 5.45 85.29 0.46 1.54 16 3 Si 0.97 42.53 29.57 68.60 2.03 44.56 16 4 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 5 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 6 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 7 C -0.47 -27.84 9.13 23.47 0.21 -27.62 16 8 H 0.09 4.71 7.86 -2.91 -0.02 4.69 16 9 C 0.24 14.39 6.49 40.20 0.26 14.65 16 10 C -0.33 -17.16 9.83 22.86 0.22 -16.94 16 11 C -0.03 -1.54 10.15 22.40 0.23 -1.31 16 12 C -0.34 -14.84 9.95 22.71 0.23 -14.62 16 13 C 0.35 17.22 7.43 133.23 0.99 18.21 16 14 N -0.65 -25.34 5.31 -308.37 -1.64 -26.97 16 15 C 0.47 19.20 7.12 87.66 0.62 19.82 16 16 O -0.47 -25.31 12.09 -3.00 -0.04 -25.35 16 17 C -0.09 -2.49 2.60 -11.46 -0.03 -2.52 16 18 C -0.10 -2.21 5.25 30.65 0.16 -2.05 16 19 C 0.07 1.01 5.42 86.32 0.47 1.47 16 20 N -0.56 -10.65 4.40 -896.39 -3.94 -14.59 16 21 C 0.00 0.03 5.38 86.30 0.46 0.50 16 22 C 0.25 3.52 5.58 71.98 0.40 3.92 16 23 F -0.22 -4.52 14.70 44.97 0.66 -3.86 16 24 F -0.22 -4.92 17.15 44.97 0.77 -4.15 16 25 C 0.06 1.25 5.23 86.33 0.45 1.71 16 26 C -0.09 -2.74 4.68 30.65 0.14 -2.60 16 27 N -0.52 -30.48 5.82 -186.37 -1.09 -31.57 16 28 H 0.27 15.39 8.29 -92.70 -0.77 14.62 16 29 H 0.10 5.03 8.06 -2.91 -0.02 5.01 16 30 H 0.14 4.85 8.06 -2.91 -0.02 4.82 16 31 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 32 H 0.42 11.65 8.08 -92.70 -0.75 10.90 16 33 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.10 1.59 7.58 -2.39 -0.02 1.57 16 36 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.10 1.13 7.92 -2.39 -0.02 1.11 16 38 H 0.13 0.75 7.77 -2.39 -0.02 0.73 16 39 H 0.09 0.64 7.98 -2.39 -0.02 0.63 16 40 H 0.16 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.08 2.05 5.48 -2.38 -0.01 2.04 16 43 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.04 1.58 8.04 -2.39 -0.02 1.56 16 Total: -1.00 -83.31 361.63 2.55 -80.77 By element: Atomic # 1 Polarization: 28.57 SS G_CDS: 0.29 Total: 28.86 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: 5.29 Total: -5.85 kcal Atomic # 7 Polarization: -108.52 SS G_CDS: -6.46 Total: -114.98 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.04 Total: -25.35 kcal Atomic # 9 Polarization: -9.45 SS G_CDS: 1.43 Total: -8.01 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -83.31 2.55 -80.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882473246.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.657 kcal (2) G-P(sol) polarization free energy of solvation -83.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds