Wall clock time and date at job start Sat Apr 11 2020 05:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86800 * 119.99910 * 2 1 4 4 H 1.48505 * 109.46649 * 239.99712 * 3 2 1 5 5 H 1.48497 * 109.47096 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47430 * 119.99430 * 3 2 1 7 7 C 1.39934 * 120.00332 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00300 * 164.62571 * 7 2 1 9 9 C 1.41410 * 119.99900 * 344.62910 * 7 2 1 10 10 C 1.40780 * 120.21054 * 335.34967 * 9 7 2 11 11 C 1.37645 * 119.88322 * 179.76912 * 10 9 7 12 12 C 1.38529 * 120.31667 * 0.50392 * 11 10 9 13 13 C 1.39237 * 120.43233 * 359.49045 * 12 11 10 14 14 N 1.39960 * 119.94618 * 180.27173 * 13 12 11 15 15 C 1.34778 * 119.99987 * 144.24353 * 14 13 12 16 16 O 1.21591 * 120.00036 * 4.51143 * 15 14 13 17 17 N 1.34777 * 120.00283 * 184.51692 * 15 14 13 18 18 C 1.46494 * 120.00296 * 179.97438 * 17 15 14 19 19 C 1.52995 * 109.47466 * 179.97438 * 18 17 15 20 20 H 1.08999 * 109.50512 * 55.07629 * 19 18 17 21 21 C 1.53035 * 109.50366 * 295.00345 * 19 18 17 22 22 N 1.46843 * 109.52636 * 180.87810 * 21 19 18 23 23 C 1.46850 * 111.19885 * 61.73829 * 22 21 19 24 24 C 1.53033 * 109.52422 * 298.26317 * 23 22 21 25 25 C 1.53118 * 109.27973 * 59.17812 * 24 23 22 26 26 F 1.39906 * 109.52219 * 182.44550 * 25 24 23 27 27 F 1.39891 * 109.52539 * 62.25319 * 25 24 23 28 28 C 1.38275 * 120.10930 * 0.25553 * 13 12 11 29 29 H 0.96993 * 120.00110 * 0.02562 * 1 2 3 30 30 H 1.08004 * 120.05725 * 0.02562 * 10 9 7 31 31 H 1.07994 * 119.83713 * 180.27947 * 11 10 9 32 32 H 1.08007 * 119.78076 * 179.76471 * 12 11 10 33 33 H 0.97001 * 120.00383 * 324.24497 * 14 13 12 34 34 H 0.96998 * 119.99862 * 359.97438 * 17 15 14 35 35 H 1.08997 * 109.47092 * 299.99959 * 18 17 15 36 36 H 1.09008 * 109.47018 * 59.99840 * 18 17 15 37 37 H 1.09004 * 109.46470 * 300.89192 * 21 19 18 38 38 H 1.08994 * 109.46696 * 60.86966 * 21 19 18 39 39 H 1.00900 * 111.00337 * 185.83831 * 22 21 19 40 40 H 1.09000 * 109.45984 * 58.27585 * 23 22 21 41 41 H 1.09003 * 109.46389 * 178.24262 * 23 22 21 42 42 H 1.08998 * 109.50736 * 179.12244 * 24 23 22 43 43 H 1.09002 * 109.50545 * 299.19518 * 24 23 22 44 44 H 1.08000 * 120.16015 * 180.02562 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0959 1.6966 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0590 -1.2287 -0.2474 9 6 1.3390 -2.4144 0.3257 10 6 0.1798 -2.3866 1.1241 11 6 -0.4688 -3.5608 1.4325 12 6 0.0194 -4.7718 0.9697 13 6 1.1647 -4.8147 0.1790 14 7 1.6458 -6.0433 -0.2878 15 6 2.2048 -6.1271 -1.5114 16 8 2.3658 -5.1220 -2.1764 17 7 2.5852 -7.3251 -1.9979 18 6 3.1922 -7.4163 -3.3280 19 6 3.5291 -8.8766 -3.6359 20 1 2.6333 -9.4877 -3.5257 21 6 4.6054 -9.3682 -2.6655 22 7 4.9442 -10.7633 -2.9740 23 6 5.4932 -10.8890 -4.3302 24 6 4.4434 -10.4428 -5.3503 25 6 4.0524 -8.9890 -5.0705 26 9 3.0523 -8.5933 -5.9653 27 9 5.1726 -8.1655 -5.2255 28 6 1.8274 -3.6454 -0.1460 29 1 -0.4850 0.8400 -0.0004 30 1 -0.2022 -1.4452 1.4905 31 1 -1.3605 -3.5382 2.0413 32 1 -0.4943 -5.6883 1.2201 33 1 1.5770 -6.8344 0.2691 34 1 2.4569 -8.1269 -1.4673 35 1 2.4920 -7.0396 -4.0736 36 1 4.1046 -6.8203 -3.3526 37 1 5.4959 -8.7475 -2.7659 38 1 4.2307 -9.3030 -1.6440 39 1 5.5822 -11.1404 -2.2892 40 1 6.3795 -10.2611 -4.4228 41 1 5.7634 -11.9282 -4.5178 42 1 4.8565 -10.5214 -6.3559 43 1 3.5625 -11.0794 -5.2681 44 1 2.7156 -3.6776 -0.7595 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886958790.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:51 Heat of formation + Delta-G solvation = -130.806014 kcal Electronic energy + Delta-G solvation = -29113.116198 eV Core-core repulsion = 24699.446722 eV Total energy + Delta-G solvation = -4413.669476 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.10938 -48.09818 -41.50444 -39.53326 -38.91351 -36.45314 -36.01994 -34.84040 -32.69671 -32.21250 -31.72772 -29.77317 -27.29757 -26.95130 -24.82171 -23.79177 -22.91147 -22.62254 -21.78225 -21.14470 -19.67430 -19.43447 -18.48983 -17.87107 -17.59488 -17.36076 -17.02520 -16.87266 -16.78708 -16.41403 -16.04013 -15.77571 -15.44621 -14.99634 -14.92926 -14.79616 -14.65689 -14.44353 -14.38619 -13.97608 -13.90665 -13.55785 -13.32245 -13.18926 -13.14369 -12.97239 -12.81305 -12.57452 -12.36898 -12.21428 -12.11939 -12.00300 -11.59206 -11.45700 -11.29907 -11.02639 -10.66944 -10.24466 -9.56590 -9.36640 -8.69071 -8.59165 -6.35687 0.94508 1.04930 1.35373 1.47349 1.51599 1.55871 2.14695 2.21793 2.63366 2.75318 2.93436 2.97663 3.14120 3.33344 3.45954 3.70727 3.76723 3.87966 4.06427 4.21981 4.33935 4.47311 4.50080 4.55081 4.55967 4.67200 4.68924 4.83606 4.88365 5.01512 5.06912 5.12052 5.15066 5.21411 5.30449 5.36583 5.72848 5.82199 5.84615 6.07493 6.14487 6.18071 6.37219 6.38679 6.71024 6.96114 7.03043 7.08912 7.57961 8.35259 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.017730 B = 0.002340 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.902120 B =11960.961619 C =12823.467068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.033 3.967 3 Si 0.984 3.016 4 H -0.267 1.267 5 H -0.261 1.261 6 H -0.257 1.257 7 C -0.501 4.501 8 H 0.063 0.937 9 C 0.085 3.915 10 C -0.199 4.199 11 C -0.092 4.092 12 C -0.248 4.248 13 C 0.173 3.827 14 N -0.665 5.665 15 C 0.693 3.307 16 O -0.619 6.619 17 N -0.718 5.718 18 C 0.145 3.855 19 C -0.122 4.122 20 H 0.133 0.867 21 C 0.064 3.936 22 N -0.685 5.685 23 C 0.056 3.944 24 C -0.149 4.149 25 C 0.281 3.719 26 F -0.211 7.211 27 F -0.212 7.212 28 C -0.237 4.237 29 H 0.288 0.712 30 H 0.107 0.893 31 H 0.124 0.876 32 H 0.134 0.866 33 H 0.420 0.580 34 H 0.417 0.583 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.033 0.967 38 H 0.105 0.895 39 H 0.365 0.635 40 H 0.035 0.965 41 H 0.115 0.885 42 H 0.102 0.898 43 H 0.116 0.884 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.244 -25.349 -4.763 27.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.181 4.181 3 Si 0.804 3.196 4 H -0.191 1.191 5 H -0.185 1.185 6 H -0.181 1.181 7 C -0.531 4.531 8 H 0.082 0.918 9 C 0.082 3.918 10 C -0.219 4.219 11 C -0.111 4.111 12 C -0.270 4.270 13 C 0.079 3.921 14 N -0.314 5.314 15 C 0.394 3.606 16 O -0.498 6.498 17 N -0.377 5.377 18 C 0.020 3.980 19 C -0.142 4.142 20 H 0.151 0.849 21 C -0.066 4.066 22 N -0.318 5.318 23 C -0.074 4.074 24 C -0.187 4.187 25 C 0.244 3.756 26 F -0.192 7.192 27 F -0.193 7.193 28 C -0.259 4.259 29 H 0.099 0.901 30 H 0.125 0.875 31 H 0.142 0.858 32 H 0.152 0.848 33 H 0.258 0.742 34 H 0.255 0.745 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.052 0.948 38 H 0.124 0.876 39 H 0.186 0.814 40 H 0.053 0.947 41 H 0.133 0.867 42 H 0.121 0.879 43 H 0.135 0.865 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.576 -24.499 -5.631 26.254 hybrid contribution 1.063 1.121 0.051 1.545 sum 8.638 -23.378 -5.580 25.540 Atomic orbital electron populations 1.69860 1.08783 1.30474 1.36112 1.26748 0.95659 1.04396 0.91276 0.85241 0.78810 0.75614 0.79899 1.19133 1.18519 1.18081 1.19734 0.97118 0.92595 1.43666 0.91848 1.17872 0.92420 0.92445 0.89042 1.21382 0.99731 0.97736 1.03100 1.20842 0.98812 0.92123 0.99301 1.20459 0.98305 0.98189 1.10001 1.17276 0.93779 0.83888 0.97144 1.42224 1.62539 1.10683 1.15956 1.16196 0.78611 0.84178 0.81658 1.90991 1.61491 1.36639 1.60707 1.44640 1.66616 1.07157 1.19248 1.21008 0.97603 0.95906 0.83501 1.22374 1.03015 0.96125 0.92702 0.84862 1.21908 0.96065 0.89387 0.99217 1.60295 1.49781 1.17359 1.04352 1.21972 0.94241 1.03341 0.87821 1.22644 1.03502 0.90295 1.02250 1.21537 0.74652 0.90856 0.88511 1.93012 1.62387 1.92705 1.71095 1.92985 1.53953 1.75853 1.96493 1.21043 1.04042 0.92720 1.08084 0.90101 0.87521 0.85801 0.84809 0.74169 0.74498 0.92782 0.92739 0.94830 0.87638 0.81400 0.94662 0.86683 0.87907 0.86529 0.89528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.89 10.82 21.82 0.24 -45.65 16 2 C 0.03 1.82 5.19 85.25 0.44 2.26 16 3 Si 0.98 41.31 29.59 68.60 2.03 43.34 16 4 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 6 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 7 C -0.50 -29.94 9.06 23.46 0.21 -29.72 16 8 H 0.06 3.76 7.89 -2.92 -0.02 3.74 16 9 C 0.08 5.03 5.58 -21.31 -0.12 4.91 16 10 C -0.20 -10.96 8.69 22.75 0.20 -10.76 16 11 C -0.09 -4.25 10.02 22.20 0.22 -4.03 16 12 C -0.25 -10.44 9.97 22.58 0.23 -10.21 16 13 C 0.17 7.89 6.28 38.09 0.24 8.13 16 14 N -0.67 -22.87 5.34 -317.32 -1.69 -24.56 16 15 C 0.69 25.57 8.40 179.05 1.50 27.07 16 16 O -0.62 -31.05 13.81 -4.00 -0.06 -31.10 16 17 N -0.72 -17.22 5.30 -478.54 -2.53 -19.76 16 18 C 0.15 3.59 4.81 86.38 0.42 4.00 16 19 C -0.12 -1.93 2.03 -10.74 -0.02 -1.95 16 20 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 21 C 0.06 0.76 5.58 86.33 0.48 1.24 16 22 N -0.68 -5.55 6.85 -514.02 -3.52 -9.06 16 23 C 0.06 0.44 6.44 86.32 0.56 1.00 16 24 C -0.15 -1.56 5.62 30.64 0.17 -1.39 16 25 C 0.28 5.06 1.65 30.67 0.05 5.11 16 26 F -0.21 -4.84 16.58 44.97 0.75 -4.09 16 27 F -0.21 -4.85 15.71 44.97 0.71 -4.14 16 28 C -0.24 -13.19 8.43 22.85 0.19 -13.00 16 29 H 0.29 14.39 8.30 -92.71 -0.77 13.62 16 30 H 0.11 6.07 6.07 -2.91 -0.02 6.05 16 31 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 32 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 33 H 0.42 9.82 8.84 -92.71 -0.82 9.00 16 34 H 0.42 6.07 7.68 -92.71 -0.71 5.36 16 35 H 0.05 1.61 7.75 -2.39 -0.02 1.59 16 36 H 0.05 1.59 7.90 -2.38 -0.02 1.57 16 37 H 0.03 0.51 7.88 -2.38 -0.02 0.49 16 38 H 0.11 0.96 7.21 -2.39 -0.02 0.94 16 39 H 0.37 1.70 8.90 -89.69 -0.80 0.90 16 40 H 0.04 0.36 7.87 -2.39 -0.02 0.34 16 41 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.09 5.17 6.26 -2.91 -0.02 5.15 16 Total: -1.00 -79.47 364.28 -0.57 -80.03 By element: Atomic # 1 Polarization: 33.59 SS G_CDS: -1.25 Total: 32.34 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: 4.77 Total: -17.34 kcal Atomic # 7 Polarization: -91.52 SS G_CDS: -7.51 Total: -99.04 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: -0.06 Total: -31.10 kcal Atomic # 9 Polarization: -9.69 SS G_CDS: 1.45 Total: -8.23 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -79.47 -0.57 -80.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886958790.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.774 kcal (2) G-P(sol) polarization free energy of solvation -79.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds