Wall clock time and date at job start Sat Apr 11 2020 05:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30650 * 1 3 3 Si 1.86794 * 119.99739 * 2 1 4 4 H 1.48504 * 109.47040 * 269.99626 * 3 2 1 5 5 H 1.48498 * 109.47531 * 30.00168 * 3 2 1 6 6 H 1.48505 * 109.47310 * 150.00335 * 3 2 1 7 7 C 1.40225 * 120.00211 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00159 * 197.87704 * 7 2 1 9 9 C 1.41113 * 119.99501 * 17.87474 * 7 2 1 10 10 C 1.40889 * 120.10619 * 24.64295 * 9 7 2 11 11 C 1.36319 * 119.88721 * 180.02562 * 10 9 7 12 12 C 1.40011 * 120.11254 * 0.25206 * 11 10 9 13 13 C 1.47642 * 119.89387 * 179.74664 * 12 11 10 14 14 O 1.21579 * 120.00391 * 359.97438 * 13 12 11 15 15 N 1.34775 * 119.99552 * 179.97438 * 13 12 11 16 16 C 1.46504 * 119.99792 * 179.97438 * 15 13 12 17 17 H 1.09001 * 109.47052 * 324.99945 * 16 15 13 18 18 C 1.52997 * 109.46846 * 85.00368 * 16 15 13 19 19 O 1.42902 * 109.47507 * 64.99971 * 18 16 15 20 20 C 1.53002 * 109.46791 * 205.00168 * 16 15 13 21 21 C 1.52997 * 109.47284 * 65.00165 * 20 16 15 22 22 C 1.50703 * 109.47136 * 179.97438 * 21 20 16 23 23 C 1.38235 * 120.00109 * 269.72964 * 22 21 20 24 24 C 1.38237 * 120.00114 * 179.76933 * 23 22 21 25 25 C 1.38242 * 119.99657 * 0.49905 * 24 23 22 26 26 C 1.38234 * 119.99682 * 359.75457 * 25 24 23 27 27 C 1.38232 * 119.99828 * 89.99869 * 22 21 20 28 28 C 1.40009 * 120.20395 * 359.48861 * 12 11 10 29 29 C 1.36320 * 120.11062 * 0.51606 * 28 12 11 30 30 H 0.97002 * 120.00128 * 359.97438 * 1 2 3 31 31 H 1.07992 * 120.05266 * 359.97438 * 10 9 7 32 32 H 1.08004 * 119.93756 * 179.97438 * 11 10 9 33 33 H 0.97004 * 120.00376 * 0.02562 * 15 13 12 34 34 H 1.08997 * 109.46854 * 185.00027 * 18 16 15 35 35 H 1.09002 * 109.46906 * 304.99772 * 18 16 15 36 36 H 0.96695 * 113.99645 * 179.97438 * 19 18 16 37 37 H 1.09004 * 109.46714 * 184.99853 * 20 16 15 38 38 H 1.08997 * 109.47324 * 304.99668 * 20 16 15 39 39 H 1.08991 * 109.47177 * 299.99678 * 21 20 16 40 40 H 1.09005 * 109.47128 * 60.00103 * 21 20 16 41 41 H 1.08005 * 119.99928 * 359.97438 * 23 22 21 42 42 H 1.07995 * 120.00071 * 180.23247 * 24 23 22 43 43 H 1.07995 * 119.99905 * 179.72514 * 25 24 23 44 44 H 1.08000 * 119.99604 * 179.97438 * 26 25 24 45 45 H 1.07998 * 120.00029 * 0.02562 * 27 22 21 46 46 H 1.08002 * 119.94487 * 180.25438 * 28 12 11 47 47 H 1.07999 * 120.05370 * 179.72150 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4880 2.0464 -1.4001 5 1 1.4379 2.6527 0.7000 6 1 3.5380 1.4402 0.7000 7 6 2.0077 -1.2144 0.0005 8 1 3.0485 -1.2368 0.2877 9 6 1.3531 -2.4071 -0.3740 10 6 0.2242 -2.3593 -1.2156 11 6 -0.4050 -3.5142 -1.5742 12 6 0.0657 -4.7460 -1.1035 13 6 -0.6228 -5.9934 -1.4904 14 8 -1.5971 -5.9500 -2.2163 15 7 -0.1712 -7.1802 -1.0389 16 6 -0.8547 -8.4180 -1.4224 17 1 -1.9262 -8.2329 -1.4980 18 6 -0.3229 -8.8962 -2.7749 19 8 1.0558 -9.2497 -2.6468 20 6 -0.5961 -9.4922 -0.3640 21 6 -1.2371 -9.0692 0.9592 22 6 -0.9829 -10.1276 2.0015 23 6 -1.8832 -11.1631 2.1690 24 6 -1.6477 -12.1365 3.1218 25 6 -0.5170 -12.0688 3.9142 26 6 0.3807 -11.0304 3.7502 27 6 0.1478 -10.0599 2.7939 28 6 1.1904 -4.7988 -0.2714 29 6 1.8263 -3.6493 0.0928 30 1 -0.4850 0.8400 0.0004 31 1 -0.1425 -1.4094 -1.5752 32 1 -1.2707 -3.4786 -2.2190 33 1 0.6060 -7.2149 -0.4594 34 1 -0.8922 -9.7662 -3.1021 35 1 -0.4264 -8.0971 -3.5091 36 1 1.4594 -9.5629 -3.4678 37 1 -1.0295 -10.4371 -0.6920 38 1 0.4781 -9.6141 -0.2249 39 1 -0.8037 -8.1244 1.2872 40 1 -2.3113 -8.9474 0.8201 41 1 -2.7691 -11.2134 1.5531 42 1 -2.3492 -12.9475 3.2501 43 1 -0.3352 -12.8269 4.6616 44 1 1.2638 -10.9773 4.3696 45 1 0.8488 -9.2483 2.6663 46 1 1.5524 -5.7515 0.0860 47 1 2.6911 -3.6908 0.7384 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928266821.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:43 Heat of formation + Delta-G solvation = -63.959010 kcal Electronic energy + Delta-G solvation = -27963.687241 eV Core-core repulsion = 24074.853247 eV Total energy + Delta-G solvation = -3888.833993 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.67629 -39.14491 -37.56785 -36.68250 -35.15647 -33.87332 -33.09688 -31.01403 -30.79051 -29.88140 -29.23978 -27.81195 -25.80574 -24.09378 -22.69926 -22.28805 -21.24964 -20.95279 -20.30882 -19.64821 -17.56307 -17.39221 -16.93629 -16.76141 -15.89794 -15.41170 -15.35428 -15.21292 -14.70101 -14.34748 -13.98525 -13.78216 -13.57768 -13.53495 -13.42447 -13.20289 -13.11043 -12.77995 -12.53157 -12.32646 -12.18031 -11.87037 -11.56108 -11.44517 -11.36112 -11.26143 -11.22591 -10.93535 -10.83521 -10.75525 -10.61285 -10.03370 -9.98456 -9.51956 -9.32266 -9.05338 -8.94624 -8.83359 -8.53594 -7.67771 -7.54557 -7.00447 -4.58532 1.23082 1.26977 2.25691 2.92757 2.97002 2.99408 3.05478 3.65038 3.75499 3.78517 3.88171 4.34335 4.53139 4.59487 4.71356 4.84376 4.96564 5.01592 5.08880 5.15817 5.36789 5.40043 5.42809 5.52850 5.60004 5.62740 5.69135 5.83966 5.88970 5.93435 5.98255 6.03557 6.16904 6.28322 6.32646 6.33685 6.37811 6.55823 6.82175 6.85793 6.88523 7.00833 7.09072 7.13212 7.45872 7.61511 7.64225 7.81520 7.90061 8.07578 8.29641 8.45091 8.64963 8.77556 9.10385 9.91459 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.013021 B = 0.002366 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.875456 B =11832.941100 C =13101.922643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.444 4.444 8 H 0.084 0.916 9 C 0.128 3.872 10 C -0.183 4.183 11 C -0.036 4.036 12 C -0.282 4.282 13 C 0.572 3.428 14 O -0.578 6.578 15 N -0.728 5.728 16 C 0.151 3.849 17 H 0.096 0.904 18 C 0.064 3.936 19 O -0.567 6.567 20 C -0.112 4.112 21 C -0.085 4.085 22 C -0.074 4.074 23 C -0.120 4.120 24 C -0.121 4.121 25 C -0.130 4.130 26 C -0.118 4.118 27 C -0.116 4.116 28 C -0.047 4.047 29 C -0.235 4.235 30 H 0.287 0.713 31 H 0.120 0.880 32 H 0.099 0.901 33 H 0.398 0.602 34 H 0.047 0.953 35 H 0.053 0.947 36 H 0.374 0.626 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.123 0.877 46 H 0.089 0.911 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.315 -18.418 2.672 18.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.148 4.148 3 Si 0.737 3.263 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.471 4.471 8 H 0.102 0.898 9 C 0.125 3.875 10 C -0.202 4.202 11 C -0.056 4.056 12 C -0.287 4.287 13 C 0.367 3.633 14 O -0.460 6.460 15 N -0.381 5.381 16 C 0.046 3.954 17 H 0.114 0.886 18 C -0.015 4.015 19 O -0.372 6.372 20 C -0.149 4.149 21 C -0.123 4.123 22 C -0.074 4.074 23 C -0.138 4.138 24 C -0.139 4.139 25 C -0.148 4.148 26 C -0.136 4.136 27 C -0.134 4.134 28 C -0.067 4.067 29 C -0.255 4.255 30 H 0.098 0.902 31 H 0.138 0.862 32 H 0.117 0.883 33 H 0.233 0.767 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.220 0.780 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.141 0.859 46 H 0.107 0.893 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.341 -18.050 2.808 18.316 hybrid contribution 0.754 0.505 -0.222 0.935 sum -0.587 -17.545 2.586 17.744 Atomic orbital electron populations 1.69753 1.07907 1.30080 1.31527 1.26105 0.94806 1.01888 0.91993 0.86213 0.80519 0.79895 0.79648 1.18933 1.20026 1.18320 1.19836 0.98372 0.91227 1.37698 0.89764 1.17786 0.90468 0.92110 0.87147 1.21015 1.00037 0.97006 1.02188 1.20478 0.97112 0.91586 0.96406 1.18908 1.03728 0.91858 1.14191 1.18608 0.82786 0.83456 0.78455 1.90623 1.28535 1.87654 1.39186 1.45884 1.33691 1.05027 1.53501 1.20920 0.97675 0.84625 0.92207 0.88637 1.22676 0.82295 0.98232 0.98341 1.86475 1.24705 1.88023 1.37976 1.21716 1.02296 0.97717 0.93212 1.20685 1.01718 0.96880 0.92999 1.19971 0.94589 0.96144 0.96707 1.21071 0.99390 0.94607 0.98695 1.21122 0.97607 0.98850 0.96295 1.21119 0.95098 0.98687 0.99909 1.21159 0.99370 0.94770 0.98345 1.21136 0.97285 0.99154 0.95792 1.20361 0.94199 0.96503 0.95591 1.20668 1.04400 0.92798 1.07614 0.90190 0.86192 0.88259 0.76659 0.93513 0.92892 0.77977 0.90925 0.90404 0.90298 0.90902 0.86194 0.86335 0.86407 0.86178 0.85886 0.89290 0.88543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.91 10.95 55.56 0.61 -18.31 16 2 C 0.07 1.74 5.14 -17.31 -0.09 1.65 16 3 Si 0.91 17.49 29.60 -169.99 -5.03 12.46 16 4 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 5 H -0.28 -5.16 7.11 56.52 0.40 -4.76 16 6 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 7 C -0.44 -11.08 9.04 -37.75 -0.34 -11.42 16 8 H 0.08 1.99 7.91 -52.49 -0.42 1.58 16 9 C 0.13 3.28 5.58 -106.80 -0.60 2.68 16 10 C -0.18 -4.70 8.64 -39.27 -0.34 -5.04 16 11 C -0.04 -0.90 9.52 -39.61 -0.38 -1.27 16 12 C -0.28 -6.44 5.89 -104.73 -0.62 -7.06 16 13 C 0.57 11.96 7.73 -12.42 -0.10 11.86 16 14 O -0.58 -13.51 15.98 5.30 0.08 -13.42 16 15 N -0.73 -11.85 4.43 -54.81 -0.24 -12.09 16 16 C 0.15 2.05 2.37 -67.93 -0.16 1.89 16 17 H 0.10 1.39 7.58 -51.93 -0.39 1.00 16 18 C 0.06 0.79 6.85 37.16 0.25 1.05 16 19 O -0.57 -6.74 12.83 -35.23 -0.45 -7.20 16 20 C -0.11 -1.23 4.45 -26.73 -0.12 -1.35 16 21 C -0.09 -0.96 5.23 -27.88 -0.15 -1.10 16 22 C -0.07 -0.81 5.13 -104.62 -0.54 -1.35 16 23 C -0.12 -1.20 9.70 -39.58 -0.38 -1.58 16 24 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 25 C -0.13 -1.18 10.05 -39.58 -0.40 -1.58 16 26 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 27 C -0.12 -1.24 9.70 -39.59 -0.38 -1.63 16 28 C -0.05 -1.02 9.47 -39.61 -0.38 -1.39 16 29 C -0.24 -5.47 9.73 -39.27 -0.38 -5.85 16 30 H 0.29 6.35 8.29 -40.82 -0.34 6.02 16 31 H 0.12 3.15 6.15 -52.49 -0.32 2.83 16 32 H 0.10 2.41 7.63 -52.48 -0.40 2.01 16 33 H 0.40 6.03 6.60 -40.82 -0.27 5.76 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.37 2.89 9.12 45.56 0.42 3.30 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.92 7.73 -51.93 -0.40 0.51 16 39 H 0.08 0.97 7.70 -51.93 -0.40 0.57 16 40 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 41 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 42 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 44 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 45 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 46 H 0.09 1.59 6.37 -52.49 -0.33 1.25 16 47 H 0.10 2.07 8.06 -52.49 -0.42 1.64 16 LS Contribution 395.36 15.07 5.96 5.96 Total: -1.00 -29.90 395.36 -10.84 -40.74 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: -5.88 Total: 16.40 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -5.88 Total: -24.54 kcal Atomic # 7 Polarization: -30.76 SS G_CDS: 0.37 Total: -30.40 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.37 Total: -20.62 kcal Atomic # 14 Polarization: 17.49 SS G_CDS: -5.03 Total: 12.46 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.90 -10.84 -40.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928266821.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.218 kcal (2) G-P(sol) polarization free energy of solvation -29.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds