Wall clock time and date at job start Sat Apr 11 2020 05:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42900 * 109.47176 * 2 1 4 4 C 1.42898 * 113.99953 * 184.85700 * 3 2 1 5 5 H 1.08997 * 109.47477 * 4.93811 * 4 3 2 6 6 C 1.50702 * 109.47007 * 124.93839 * 4 3 2 7 7 O 1.21279 * 120.00398 * 4.99171 * 6 4 3 8 8 N 1.34781 * 119.99720 * 185.26760 * 6 4 3 9 9 C 1.46496 * 119.99741 * 174.70970 * 8 6 4 10 10 H 1.08997 * 109.47550 * 35.00229 * 9 8 6 11 11 C 1.50700 * 109.47101 * 155.00137 * 9 8 6 12 12 H 1.08000 * 120.00242 * 0.02562 * 11 9 8 13 13 C 1.37876 * 120.00165 * 180.02562 * 11 9 8 14 14 N 1.31511 * 120.00127 * 359.97438 * 13 11 9 15 15 Si 1.86805 * 120.00086 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47230 * 59.99895 * 15 13 11 17 17 H 1.48500 * 109.46993 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47066 * 299.99743 * 15 13 11 19 19 C 1.52999 * 109.47363 * 275.00245 * 9 8 6 20 20 F 1.39898 * 109.47401 * 59.99864 * 19 9 8 21 21 F 1.39900 * 109.47284 * 180.02562 * 19 9 8 22 22 F 1.39900 * 109.47040 * 300.00063 * 19 9 8 23 23 C 1.53004 * 109.46980 * 244.93580 * 4 3 2 24 24 C 1.53175 * 109.54110 * 65.20382 * 23 4 3 25 25 C 1.53101 * 109.15679 * 183.24133 * 24 23 4 26 26 O 1.42908 * 109.48802 * 57.47111 * 25 24 23 27 27 C 1.42908 * 114.09604 * 298.88799 * 26 25 24 28 28 C 1.53097 * 109.41256 * 61.15959 * 27 26 25 29 29 H 1.08996 * 109.47475 * 299.99777 * 1 2 3 30 30 H 1.09002 * 109.47417 * 60.00135 * 1 2 3 31 31 H 1.09008 * 109.47276 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.47388 * 239.99841 * 2 1 3 33 33 H 1.08995 * 109.47475 * 120.00274 * 2 1 3 34 34 H 0.97002 * 120.00257 * 354.71281 * 8 6 4 35 35 H 0.97001 * 120.00288 * 179.97438 * 14 13 11 36 36 H 1.09004 * 109.53769 * 185.37530 * 23 4 3 37 37 H 1.09003 * 109.52067 * 303.05639 * 24 23 4 38 38 H 1.09001 * 109.52766 * 63.24783 * 24 23 4 39 39 H 1.09001 * 109.40717 * 297.49357 * 25 24 23 40 40 H 1.08993 * 109.49495 * 177.50553 * 25 24 23 41 41 H 1.08998 * 109.47939 * 301.17801 * 27 26 25 42 42 H 1.08997 * 109.47647 * 181.13723 * 27 26 25 43 43 H 1.08997 * 109.52285 * 182.48447 * 28 27 26 44 44 H 1.08994 * 109.57372 * 62.32467 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4264 1.4616 -0.1105 5 1 3.8599 0.4731 -0.2620 6 6 3.7695 2.3455 -1.2819 7 8 2.8873 2.9025 -1.9003 8 7 5.0564 2.5126 -1.6459 9 6 5.3831 3.2765 -2.8524 10 1 4.6709 4.0932 -2.9694 11 6 6.7760 3.8386 -2.7293 12 1 7.3596 3.6457 -1.8413 13 6 7.3052 4.5992 -3.7502 14 7 6.5948 4.8337 -4.8318 15 14 9.0320 5.2953 -3.5979 16 1 10.0023 4.1823 -3.4396 17 1 9.3627 6.0708 -4.8204 18 1 9.1035 6.1867 -2.4124 19 6 5.3102 2.3574 -4.0734 20 9 4.0172 1.8356 -4.1878 21 9 5.6227 3.0869 -5.2255 22 9 6.2245 1.3092 -3.9233 23 6 3.9901 2.0745 1.1731 24 6 3.7560 1.1156 2.3444 25 6 4.2499 1.7712 3.6368 26 8 3.5729 3.0149 3.8294 27 6 3.7955 3.9677 2.7878 28 6 3.2813 3.4013 1.4616 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 5.7663 2.1269 -1.1089 35 1 6.9670 5.3691 -5.5500 36 1 5.0592 2.2505 1.0540 37 1 2.6911 0.8995 2.4310 38 1 4.3038 0.1892 2.1720 39 1 5.3230 1.9487 3.5657 40 1 4.0456 1.1118 4.4803 41 1 4.8627 4.1738 2.7056 42 1 3.2636 4.8904 3.0196 43 1 3.4899 4.1080 0.6584 44 1 2.2065 3.2330 1.5287 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928800697.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:56 Heat of formation + Delta-G solvation = -277.338389 kcal Electronic energy + Delta-G solvation = -32378.756312 eV Core-core repulsion = 27495.670739 eV Total energy + Delta-G solvation = -4883.085572 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.41036 -46.07071 -45.66538 -40.21572 -38.68526 -37.43140 -34.66634 -34.19429 -32.56021 -31.27215 -31.02023 -29.11530 -27.14281 -24.62250 -23.90249 -23.54323 -22.72948 -21.49521 -20.28715 -19.70812 -17.77721 -17.03290 -16.75168 -16.72215 -16.63934 -16.27943 -15.91118 -15.73030 -15.27628 -14.99389 -14.81488 -14.54391 -14.28712 -13.84276 -13.68564 -13.42922 -12.99463 -12.86844 -12.62678 -12.47900 -12.40792 -12.34421 -12.30079 -12.12493 -12.01392 -11.86413 -11.77997 -11.39470 -11.28084 -11.22366 -11.02875 -10.91153 -10.83932 -10.68551 -10.43736 -10.30472 -9.94851 -9.71985 -9.59448 -8.85823 -8.75960 -8.30404 -6.27362 -4.51929 3.10351 3.16941 3.21316 3.22921 3.32089 3.83568 4.02998 4.18272 4.49855 4.56324 4.63791 4.78854 4.89099 4.92365 5.01942 5.04478 5.14022 5.23552 5.31928 5.33209 5.42909 5.45168 5.55131 5.61026 5.65013 5.68333 5.79832 5.82575 5.87142 5.89016 5.99527 6.10716 6.15889 6.17686 6.42728 6.88183 7.06535 7.14532 7.20422 7.42852 7.59002 8.26026 8.45650 8.83805 9.16150 10.64233 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012396 B = 0.004320 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.205784 B = 6479.224768 C = 8048.079299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.348 6.348 4 C 0.081 3.919 5 H 0.085 0.915 6 C 0.498 3.502 7 O -0.515 6.515 8 N -0.712 5.712 9 C 0.246 3.754 10 H 0.086 0.914 11 C -0.552 4.552 12 H 0.077 0.923 13 C 0.065 3.935 14 N -0.839 5.839 15 Si 0.915 3.085 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.272 1.272 19 C 0.416 3.584 20 F -0.220 7.220 21 F -0.136 7.136 22 F -0.210 7.210 23 C -0.095 4.095 24 C -0.151 4.151 25 C 0.063 3.937 26 O -0.385 6.385 27 C 0.062 3.938 28 C -0.146 4.146 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.397 0.603 35 H 0.269 0.731 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.050 0.950 40 H 0.091 0.909 41 H 0.051 0.949 42 H 0.093 0.907 43 H 0.078 0.922 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.030 -8.232 13.029 15.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 O -0.266 6.266 4 C 0.019 3.981 5 H 0.103 0.897 6 C 0.282 3.718 7 O -0.389 6.389 8 N -0.364 5.364 9 C 0.141 3.859 10 H 0.104 0.896 11 C -0.589 4.589 12 H 0.095 0.905 13 C -0.144 4.144 14 N -0.472 5.472 15 Si 0.741 3.259 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.198 1.198 19 C 0.360 3.640 20 F -0.202 7.202 21 F -0.117 7.117 22 F -0.191 7.191 23 C -0.114 4.114 24 C -0.188 4.188 25 C -0.014 4.014 26 O -0.304 6.304 27 C -0.015 4.015 28 C -0.183 4.183 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.230 0.770 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.068 0.932 40 H 0.109 0.891 41 H 0.069 0.931 42 H 0.112 0.888 43 H 0.096 0.904 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.955 -7.544 12.493 15.412 hybrid contribution 1.615 -0.444 -0.462 1.737 sum -3.340 -7.988 12.032 14.823 Atomic orbital electron populations 1.21711 0.93647 1.01928 1.03377 1.22632 0.95915 0.83998 0.99797 1.88024 1.18869 1.25850 1.93851 1.21988 0.83742 0.98922 0.93481 0.89722 1.20642 0.83407 0.82531 0.85203 1.90708 1.47092 1.46896 1.54206 1.46061 1.06550 1.55620 1.28131 1.19707 1.00556 0.88398 0.77275 0.89621 1.20812 0.97852 1.34712 1.05531 0.90523 1.25081 0.99154 0.95672 0.94450 1.70382 1.37002 1.33871 1.05963 0.86278 0.82657 0.79112 0.77839 1.19830 1.20846 1.19760 1.23194 0.71157 0.79951 0.89708 1.93063 1.41435 1.88705 1.96967 1.93408 1.91816 1.74655 1.51819 1.92986 1.68460 1.61467 1.96232 1.21533 1.00264 0.96313 0.93266 1.22263 1.03112 0.98461 0.94984 1.22520 0.95838 0.85782 0.97249 1.87912 1.72233 1.24522 1.45714 1.22620 1.00105 0.91762 0.87008 1.22121 1.02076 0.96245 0.97893 0.91902 0.91533 0.91340 0.93350 0.93454 0.76961 0.92011 0.89558 0.90349 0.90974 0.93183 0.89085 0.93090 0.88836 0.90360 0.89813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.28 37.15 0.38 -1.18 16 2 C 0.05 0.63 6.22 37.15 0.23 0.86 16 3 O -0.35 -5.31 8.09 -55.09 -0.45 -5.75 16 4 C 0.08 1.17 2.34 -27.88 -0.07 1.11 16 5 H 0.08 1.05 7.59 -51.93 -0.39 0.66 16 6 C 0.50 9.67 5.70 -10.98 -0.06 9.61 16 7 O -0.51 -12.28 15.32 -14.30 -0.22 -12.50 16 8 N -0.71 -14.01 4.91 -54.93 -0.27 -14.28 16 9 C 0.25 5.98 2.22 -69.08 -0.15 5.83 16 10 H 0.09 2.36 7.51 -51.93 -0.39 1.97 16 11 C -0.55 -13.70 8.46 -34.44 -0.29 -13.99 16 12 H 0.08 1.77 7.74 -52.49 -0.41 1.37 16 13 C 0.07 1.67 5.20 -17.82 -0.09 1.58 16 14 N -0.84 -22.73 9.50 55.43 0.53 -22.20 16 15 Si 0.91 19.71 29.54 -169.99 -5.02 14.69 16 16 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 17 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 18 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 19 C 0.42 10.53 2.81 37.16 0.10 10.63 16 20 F -0.22 -5.55 15.88 2.25 0.04 -5.51 16 21 F -0.14 -3.73 12.91 2.25 0.03 -3.70 16 22 F -0.21 -5.06 16.94 2.25 0.04 -5.02 16 23 C -0.09 -1.16 2.08 -90.44 -0.19 -1.35 16 24 C -0.15 -1.49 5.29 -26.59 -0.14 -1.63 16 25 C 0.06 0.61 6.84 37.21 0.25 0.86 16 26 O -0.39 -4.74 10.77 -35.23 -0.38 -5.12 16 27 C 0.06 0.73 6.84 37.21 0.25 0.98 16 28 C -0.15 -1.97 5.03 -26.59 -0.13 -2.11 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 32 H 0.05 0.58 8.11 -51.92 -0.42 0.16 16 33 H 0.05 0.45 7.50 -51.93 -0.39 0.06 16 34 H 0.40 6.61 8.10 -40.82 -0.33 6.28 16 35 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 36 H 0.09 1.00 7.65 -51.93 -0.40 0.60 16 37 H 0.08 0.83 7.05 -51.93 -0.37 0.47 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.08 1.22 7.51 -51.93 -0.39 0.83 16 44 H 0.08 1.23 7.45 -51.93 -0.39 0.85 16 LS Contribution 364.17 15.07 5.49 5.49 Total: -1.00 -30.90 364.17 -6.51 -37.40 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -6.39 Total: 5.29 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: 0.10 Total: 11.22 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.26 Total: -36.48 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -1.04 Total: -23.38 kcal Atomic # 9 Polarization: -14.34 SS G_CDS: 0.10 Total: -14.24 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.90 -6.51 -37.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928800697.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -239.934 kcal (2) G-P(sol) polarization free energy of solvation -30.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -270.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -277.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds