Wall clock time and date at job start Sat Apr 11 2020 05:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28718 * 125.86958 * 2 1 4 4 N 1.28629 * 110.17835 * 179.97438 * 3 2 1 5 5 C 1.33769 * 108.88747 * 359.76916 * 4 3 2 6 6 C 1.35313 * 125.86824 * 179.97438 * 2 1 3 7 7 C 1.50701 * 126.91222 * 359.97438 * 6 2 1 8 8 N 1.46895 * 109.47042 * 274.99140 * 7 6 2 9 9 C 1.46847 * 110.99982 * 189.99790 * 8 7 6 10 10 C 1.53034 * 109.51345 * 185.84805 * 9 8 7 11 11 C 1.53123 * 109.27992 * 300.80438 * 10 9 8 12 12 N 1.46500 * 109.57501 * 177.60191 * 11 10 9 13 13 C 1.34774 * 119.99952 * 85.29823 * 12 11 10 14 14 O 1.21280 * 119.99968 * 0.02562 * 13 12 11 15 15 C 1.50704 * 120.00154 * 179.97438 * 13 12 11 16 16 S 1.80999 * 109.47013 * 180.02562 * 15 13 12 17 17 C 1.76203 * 99.99508 * 180.02562 * 16 15 13 18 18 H 1.07991 * 120.00570 * 359.97438 * 17 16 15 19 19 C 1.38803 * 119.99816 * 180.02562 * 17 16 15 20 20 N 1.31634 * 120.00091 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00033 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46814 * 60.00307 * 21 19 17 23 23 H 1.48504 * 109.46942 * 179.97438 * 21 19 17 24 24 H 1.48489 * 109.47260 * 299.99782 * 21 19 17 25 25 C 1.53127 * 109.15019 * 57.67185 * 11 10 9 26 26 C 1.46843 * 110.99970 * 314.21155 * 8 7 6 27 27 H 1.08996 * 109.47552 * 270.02431 * 1 2 3 28 28 H 1.09005 * 109.46933 * 30.02938 * 1 2 3 29 29 H 1.09002 * 109.47052 * 150.02416 * 1 2 3 30 30 H 1.07995 * 126.75222 * 180.23328 * 5 4 3 31 31 H 1.08997 * 109.47013 * 154.98967 * 7 6 2 32 32 H 1.09001 * 109.47015 * 34.99841 * 7 6 2 33 33 H 1.09002 * 109.46481 * 305.85957 * 9 8 7 34 34 H 1.08994 * 109.46283 * 65.83811 * 9 8 7 35 35 H 1.08997 * 109.50952 * 60.75924 * 10 9 8 36 36 H 1.08998 * 109.50459 * 180.87821 * 10 9 8 37 37 H 1.09003 * 109.53012 * 297.76758 * 11 10 9 38 38 H 0.96998 * 120.00140 * 265.29622 * 12 11 10 39 39 H 1.09003 * 109.46994 * 300.00480 * 15 13 12 40 40 H 1.08997 * 109.46431 * 60.00087 * 15 13 12 41 41 H 0.96992 * 120.00296 * 180.02562 * 20 19 17 42 42 H 1.08997 * 109.49981 * 182.39822 * 25 11 10 43 43 H 1.08998 * 109.53089 * 62.30397 * 25 11 10 44 44 H 1.08993 * 109.46313 * 294.17341 * 26 8 7 45 45 H 1.09000 * 109.46480 * 54.15451 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2192 1.0431 0.0000 4 7 3.4576 0.6952 0.0005 5 6 3.5322 -0.6404 0.0060 6 6 2.2578 -1.0965 0.0005 7 6 1.8117 -2.5360 0.0017 8 7 1.5522 -2.9670 1.3818 9 6 1.3461 -4.4194 1.4495 10 6 0.9359 -4.8117 2.8707 11 6 2.0345 -4.3873 3.8494 12 7 1.6231 -4.7083 5.2183 13 6 1.8442 -5.9407 5.7169 14 8 2.3841 -6.7839 5.0324 15 6 1.4216 -6.2708 7.1253 16 16 1.8526 -7.9889 7.4975 17 6 1.2626 -8.1002 9.1541 18 1 0.8008 -7.2432 9.6216 19 6 1.3923 -9.2891 9.8585 20 7 1.9565 -10.3333 9.2893 21 14 0.7674 -9.4070 11.6150 22 1 -0.6917 -9.1321 11.6407 23 1 1.0227 -10.7722 12.1406 24 1 1.4738 -8.4107 12.4596 25 6 2.2631 -2.8784 3.7242 26 6 2.6347 -2.5419 2.2782 27 1 -0.3634 0.0004 1.0276 28 1 -0.3633 0.8898 -0.5143 29 1 -0.3633 -0.8902 -0.5135 30 1 4.4321 -1.2373 0.0114 31 1 2.5935 -3.1590 -0.4326 32 1 0.8998 -2.6342 -0.5874 33 1 0.5597 -4.7076 0.7519 34 1 2.2717 -4.9303 1.1846 35 1 0.0031 -4.3118 3.1315 36 1 0.7982 -5.8916 2.9247 37 1 2.9576 -4.9165 3.6128 38 1 1.1917 -4.0338 5.7659 39 1 1.9342 -5.6086 7.8231 40 1 0.3442 -6.1369 7.2220 41 1 2.0468 -11.1642 9.7814 42 1 3.0735 -2.5769 4.3879 43 1 1.3515 -2.3477 3.9987 44 1 3.5542 -3.0615 2.0092 45 1 2.7841 -1.4664 2.1828 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226145686.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:07 Heat of formation + Delta-G solvation = 66.943189 kcal Electronic energy + Delta-G solvation = -26482.468267 eV Core-core repulsion = 22663.506978 eV Total energy + Delta-G solvation = -3818.961289 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.70657 -40.00205 -38.59340 -35.53038 -34.92613 -32.85925 -32.44098 -31.38913 -30.75537 -28.97446 -28.35339 -26.48844 -25.48098 -23.66809 -23.16647 -22.93785 -21.03290 -20.38230 -20.04735 -17.87090 -17.61083 -17.35347 -16.51550 -16.32324 -15.71456 -15.62615 -15.38347 -14.96862 -14.81733 -14.61049 -14.20245 -14.01197 -13.76650 -13.58721 -13.46281 -13.34722 -13.20555 -12.76465 -12.60362 -12.46694 -12.10170 -11.91982 -11.67496 -11.50432 -11.25261 -11.06982 -11.05579 -11.01383 -10.81012 -10.71575 -10.47774 -9.83629 -9.62718 -9.40516 -9.07683 -8.91768 -8.80898 -8.25940 -6.51623 -6.22957 -3.93678 1.11678 1.95598 2.16494 3.00698 3.06758 3.22424 3.26389 3.29642 3.42553 3.68655 3.81436 4.05286 4.19299 4.36009 4.42616 4.50380 4.56334 4.63139 4.74976 4.83212 4.88848 4.95756 5.01385 5.08205 5.11132 5.12110 5.22756 5.34016 5.35464 5.43427 5.49142 5.62280 5.65386 5.74372 5.75148 5.87386 5.95137 6.11119 6.12611 6.13275 6.47489 6.58027 6.64153 7.57950 7.69954 8.12052 8.33660 8.59552 9.22252 10.84387 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.034087 B = 0.001788 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.223252 B =15656.216831 C =15803.331544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.279 5.279 3 N -0.088 5.088 4 N -0.270 5.270 5 C -0.046 4.046 6 C -0.012 4.012 7 C 0.125 3.875 8 N -0.536 5.536 9 C 0.060 3.940 10 C -0.126 4.126 11 C 0.146 3.854 12 N -0.735 5.735 13 C 0.533 3.467 14 O -0.518 6.518 15 C -0.154 4.154 16 S -0.060 6.060 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C -0.122 4.122 26 C 0.057 3.943 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.187 0.813 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.042 0.958 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.398 0.602 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.269 0.731 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.042 0.958 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.154 19.606 -20.263 28.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.072 5.072 3 N -0.067 5.067 4 N -0.135 5.135 5 C -0.205 4.205 6 C -0.146 4.146 7 C -0.004 4.004 8 N -0.262 5.262 9 C -0.068 4.068 10 C -0.165 4.165 11 C 0.041 3.959 12 N -0.388 5.388 13 C 0.319 3.681 14 O -0.392 6.392 15 C -0.305 4.305 16 S 0.167 5.833 17 C -0.685 4.685 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.160 4.160 26 C -0.071 4.071 27 H 0.114 0.886 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.204 0.796 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.061 0.939 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.231 0.769 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.060 0.940 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.606 19.782 -21.229 29.240 hybrid contribution -0.710 -0.333 1.966 2.117 sum -4.317 19.449 -19.264 27.712 Atomic orbital electron populations 1.22276 0.72513 1.05566 1.05490 1.47204 1.09492 1.04344 1.46193 1.78348 0.96626 1.11702 1.20066 1.75119 1.09604 1.12347 1.16390 1.23429 0.97102 0.92120 1.07801 1.22007 0.91213 0.91623 1.09718 1.20534 1.01518 0.87031 0.91318 1.62144 1.43732 1.14694 1.05590 1.22084 1.00868 0.85761 0.98088 1.21987 0.99242 1.02219 0.93096 1.20910 0.98178 0.94794 0.82011 1.46063 1.63999 1.13997 1.14749 1.20317 0.77805 0.81354 0.88587 1.90693 1.41110 1.46914 1.60489 1.23539 1.04411 1.07485 0.95029 1.85376 1.79173 1.02125 1.16670 1.22827 1.45825 1.00900 0.98900 0.90988 1.24994 0.94902 0.94721 0.98965 1.70004 1.40800 1.02132 1.37355 0.86224 0.79249 0.77452 0.82578 1.19945 1.20803 1.19935 1.21851 1.02746 0.95307 0.96118 1.22117 0.92075 1.00907 0.92046 0.88606 0.88233 0.88258 0.79560 0.91390 0.89126 0.90155 0.93933 0.90911 0.90279 0.89688 0.76862 0.89277 0.89261 0.92123 0.90666 0.90712 0.93976 0.90343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.28 11.21 59.85 0.67 0.95 16 2 N -0.28 -2.08 3.74 -63.79 -0.24 -2.32 16 3 N -0.09 -0.94 13.17 60.35 0.79 -0.15 16 4 N -0.27 -3.08 12.41 30.23 0.38 -2.70 16 5 C -0.05 -0.38 10.76 -17.74 -0.19 -0.57 16 6 C -0.01 -0.09 4.92 -82.09 -0.40 -0.49 16 7 C 0.13 0.64 5.50 -4.98 -0.03 0.61 16 8 N -0.54 -3.50 4.80 -236.13 -1.13 -4.63 16 9 C 0.06 0.44 5.42 -3.84 -0.02 0.42 16 10 C -0.13 -1.24 5.68 -26.65 -0.15 -1.39 16 11 C 0.15 1.59 2.52 -67.80 -0.17 1.42 16 12 N -0.73 -9.27 5.08 -53.68 -0.27 -9.54 16 13 C 0.53 9.56 7.82 -10.98 -0.09 9.47 16 14 O -0.52 -11.30 15.52 5.56 0.09 -11.21 16 15 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 16 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 17 C -0.54 -15.16 9.50 30.94 0.29 -14.87 16 18 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 19 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 20 N -0.87 -26.00 13.22 55.49 0.73 -25.27 16 21 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 C -0.12 -1.01 5.57 -26.64 -0.15 -1.16 16 26 C 0.06 0.43 4.86 -3.83 -0.02 0.41 16 27 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.10 0.14 7.22 -51.93 -0.38 -0.24 16 30 H 0.19 1.11 8.06 -52.49 -0.42 0.69 16 31 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 32 H 0.09 0.32 7.32 -51.93 -0.38 -0.06 16 33 H 0.08 0.48 8.12 -51.93 -0.42 0.06 16 34 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.09 1.12 7.58 -51.93 -0.39 0.72 16 38 H 0.40 3.96 8.61 -40.82 -0.35 3.61 16 39 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 40 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 41 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.08 0.65 5.84 -51.93 -0.30 0.35 16 LS Contribution 383.16 15.07 5.77 5.77 Total: -1.00 -36.44 383.16 -8.08 -44.53 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -6.84 Total: -0.85 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -0.13 Total: -6.04 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: 0.26 Total: -44.61 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.09 Total: -11.21 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.44 -8.08 -44.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226145686.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.470 kcal (2) G-P(sol) polarization free energy of solvation -36.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds