Wall clock time and date at job start Sat Apr 11 2020 05:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28718 * 125.86958 * 2 1 4 4 N 1.28629 * 110.17835 * 179.97438 * 3 2 1 5 5 C 1.33769 * 108.88747 * 359.76916 * 4 3 2 6 6 C 1.35313 * 125.86824 * 179.97438 * 2 1 3 7 7 C 1.50701 * 126.91222 * 359.97438 * 6 2 1 8 8 N 1.46895 * 109.47042 * 274.99140 * 7 6 2 9 9 C 1.46847 * 110.99982 * 189.99790 * 8 7 6 10 10 C 1.53034 * 109.51345 * 185.84805 * 9 8 7 11 11 C 1.53123 * 109.27992 * 300.80438 * 10 9 8 12 12 N 1.46500 * 109.57501 * 177.60191 * 11 10 9 13 13 C 1.34774 * 119.99952 * 85.29823 * 12 11 10 14 14 O 1.21280 * 119.99968 * 0.02562 * 13 12 11 15 15 C 1.50704 * 120.00154 * 179.97438 * 13 12 11 16 16 S 1.80999 * 109.47013 * 180.02562 * 15 13 12 17 17 C 1.76203 * 99.99508 * 180.02562 * 16 15 13 18 18 H 1.07991 * 120.00570 * 359.97438 * 17 16 15 19 19 C 1.38803 * 119.99816 * 180.02562 * 17 16 15 20 20 N 1.31634 * 120.00091 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00033 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46814 * 60.00307 * 21 19 17 23 23 H 1.48504 * 109.46942 * 179.97438 * 21 19 17 24 24 H 1.48489 * 109.47260 * 299.99782 * 21 19 17 25 25 C 1.53127 * 109.15019 * 57.67185 * 11 10 9 26 26 C 1.46843 * 110.99970 * 314.21155 * 8 7 6 27 27 H 1.08996 * 109.47552 * 270.02431 * 1 2 3 28 28 H 1.09005 * 109.46933 * 30.02938 * 1 2 3 29 29 H 1.09002 * 109.47052 * 150.02416 * 1 2 3 30 30 H 1.07995 * 126.75222 * 180.23328 * 5 4 3 31 31 H 1.08997 * 109.47013 * 154.98967 * 7 6 2 32 32 H 1.09001 * 109.47015 * 34.99841 * 7 6 2 33 33 H 1.09002 * 109.46481 * 305.85957 * 9 8 7 34 34 H 1.08994 * 109.46283 * 65.83811 * 9 8 7 35 35 H 1.08997 * 109.50952 * 60.75924 * 10 9 8 36 36 H 1.08998 * 109.50459 * 180.87821 * 10 9 8 37 37 H 1.09003 * 109.53012 * 297.76758 * 11 10 9 38 38 H 0.96998 * 120.00140 * 265.29622 * 12 11 10 39 39 H 1.09003 * 109.46994 * 300.00480 * 15 13 12 40 40 H 1.08997 * 109.46431 * 60.00087 * 15 13 12 41 41 H 0.96992 * 120.00296 * 180.02562 * 20 19 17 42 42 H 1.08997 * 109.49981 * 182.39822 * 25 11 10 43 43 H 1.08998 * 109.53089 * 62.30397 * 25 11 10 44 44 H 1.08993 * 109.46313 * 294.17341 * 26 8 7 45 45 H 1.09000 * 109.46480 * 54.15451 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2192 1.0431 0.0000 4 7 3.4576 0.6952 0.0005 5 6 3.5322 -0.6404 0.0060 6 6 2.2578 -1.0965 0.0005 7 6 1.8117 -2.5360 0.0017 8 7 1.5522 -2.9670 1.3818 9 6 1.3461 -4.4194 1.4495 10 6 0.9359 -4.8117 2.8707 11 6 2.0345 -4.3873 3.8494 12 7 1.6231 -4.7083 5.2183 13 6 1.8442 -5.9407 5.7169 14 8 2.3841 -6.7839 5.0324 15 6 1.4216 -6.2708 7.1253 16 16 1.8526 -7.9889 7.4975 17 6 1.2626 -8.1002 9.1541 18 1 0.8008 -7.2432 9.6216 19 6 1.3923 -9.2891 9.8585 20 7 1.9565 -10.3333 9.2893 21 14 0.7674 -9.4070 11.6150 22 1 -0.6917 -9.1321 11.6407 23 1 1.0227 -10.7722 12.1406 24 1 1.4738 -8.4107 12.4596 25 6 2.2631 -2.8784 3.7242 26 6 2.6347 -2.5419 2.2782 27 1 -0.3634 0.0004 1.0276 28 1 -0.3633 0.8898 -0.5143 29 1 -0.3633 -0.8902 -0.5135 30 1 4.4321 -1.2373 0.0114 31 1 2.5935 -3.1590 -0.4326 32 1 0.8998 -2.6342 -0.5874 33 1 0.5597 -4.7076 0.7519 34 1 2.2717 -4.9303 1.1846 35 1 0.0031 -4.3118 3.1315 36 1 0.7982 -5.8916 2.9247 37 1 2.9576 -4.9165 3.6128 38 1 1.1917 -4.0338 5.7659 39 1 1.9342 -5.6086 7.8231 40 1 0.3442 -6.1369 7.2220 41 1 2.0468 -11.1642 9.7814 42 1 3.0735 -2.5769 4.3879 43 1 1.3515 -2.3477 3.9987 44 1 3.5542 -3.0615 2.0092 45 1 2.7841 -1.4664 2.1828 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226145686.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:05 Heat of formation + Delta-G solvation = 38.570437 kcal Electronic energy + Delta-G solvation = -26483.698601 eV Core-core repulsion = 22663.506978 eV Total energy + Delta-G solvation = -3820.191624 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.29959 -41.04346 -39.60375 -36.43996 -35.52224 -34.58196 -33.76105 -32.16130 -31.58699 -30.24160 -28.78291 -27.70085 -27.08673 -24.37327 -23.91787 -23.53278 -21.77033 -21.49692 -20.87734 -19.77076 -18.17772 -17.96723 -17.76916 -17.42208 -16.87583 -16.53296 -16.40178 -16.19716 -15.89057 -15.79746 -15.23382 -14.91018 -14.68300 -14.53048 -14.30322 -14.15587 -14.07585 -13.73286 -13.53803 -13.29643 -13.16796 -13.07055 -12.86772 -12.68312 -12.59913 -12.36024 -12.18629 -11.88667 -11.86358 -11.73592 -11.52655 -11.12721 -11.03751 -10.88317 -10.27749 -10.24133 -10.04721 -9.35958 -8.66109 -8.34345 -6.12280 0.55507 1.27388 1.43931 1.47111 1.50711 1.55088 1.56983 1.63082 2.26049 2.30557 2.88018 2.99583 3.32293 3.33710 3.64071 3.68207 3.88225 3.93508 3.98527 4.07168 4.09232 4.22733 4.31034 4.33517 4.39357 4.43677 4.51542 4.55903 4.56740 4.64421 4.69362 4.72321 4.88569 4.90912 4.96072 5.03911 5.14946 5.19160 5.27857 5.41824 5.54500 5.63664 5.93750 5.98958 6.19788 6.53365 7.06850 7.27003 7.49019 8.74495 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.034087 B = 0.001788 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.223252 B =15656.216831 C =15803.331544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.272 5.272 3 N -0.122 5.122 4 N -0.310 5.310 5 C -0.057 4.057 6 C -0.003 4.003 7 C 0.128 3.872 8 N -0.531 5.531 9 C 0.067 3.933 10 C -0.121 4.121 11 C 0.145 3.855 12 N -0.710 5.710 13 C 0.536 3.464 14 O -0.564 6.564 15 C -0.131 4.131 16 S -0.150 6.150 17 C -0.548 4.548 18 H 0.082 0.918 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 0.998 3.002 22 H -0.262 1.262 23 H -0.279 1.279 24 H -0.263 1.263 25 C -0.112 4.112 26 C 0.061 3.939 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.125 0.875 30 H 0.203 0.797 31 H 0.080 0.920 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.037 0.963 35 H 0.082 0.918 36 H 0.050 0.950 37 H 0.060 0.940 38 H 0.415 0.585 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.271 0.729 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.041 0.959 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.004 21.076 -20.229 29.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.066 5.066 3 N -0.101 5.101 4 N -0.174 5.174 5 C -0.216 4.216 6 C -0.137 4.137 7 C -0.001 4.001 8 N -0.257 5.257 9 C -0.061 4.061 10 C -0.160 4.160 11 C 0.040 3.960 12 N -0.363 5.363 13 C 0.322 3.678 14 O -0.442 6.442 15 C -0.282 4.282 16 S 0.077 5.923 17 C -0.695 4.695 18 H 0.100 0.900 19 C -0.192 4.192 20 N -0.547 5.547 21 Si 0.819 3.181 22 H -0.186 1.186 23 H -0.204 1.204 24 H -0.187 1.187 25 C -0.150 4.150 26 C -0.067 4.067 27 H 0.121 0.879 28 H 0.127 0.873 29 H 0.143 0.857 30 H 0.220 0.780 31 H 0.098 0.902 32 H 0.134 0.866 33 H 0.120 0.880 34 H 0.055 0.945 35 H 0.101 0.899 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.252 0.748 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.080 0.920 42 H 0.094 0.906 43 H 0.104 0.896 44 H 0.059 0.941 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.489 21.337 -21.212 30.584 hybrid contribution -0.164 -0.714 1.861 2.000 sum -5.653 20.623 -19.351 28.840 Atomic orbital electron populations 1.22662 0.70279 1.07368 1.06488 1.47536 1.10736 1.03807 1.44529 1.78273 0.96875 1.13062 1.21867 1.75059 1.10389 1.14064 1.17877 1.23828 0.98582 0.91465 1.07767 1.22245 0.90691 0.92293 1.08467 1.20670 1.03191 0.85638 0.90595 1.62135 1.43205 1.14013 1.06367 1.22008 1.01337 0.86119 0.96663 1.21894 0.99135 1.00475 0.94509 1.21062 0.97621 0.96400 0.80885 1.45843 1.62393 1.12361 1.15700 1.20025 0.77620 0.82499 0.87697 1.90684 1.43497 1.48712 1.61283 1.23385 1.05747 1.02292 0.96758 1.85545 1.80155 1.09050 1.17522 1.23175 1.45777 1.01543 0.99043 0.89962 1.26127 0.94874 0.94171 1.04001 1.70172 1.42249 1.02846 1.39434 0.85014 0.79081 0.77709 0.76263 1.18625 1.20408 1.18730 1.21776 1.03327 0.92940 0.96954 1.22030 0.92435 1.00545 0.91701 0.87898 0.87342 0.85709 0.78024 0.90231 0.86609 0.88031 0.94464 0.89938 0.93124 0.92170 0.74847 0.87459 0.87275 0.91997 0.90637 0.89575 0.94118 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.29 11.21 127.77 1.43 1.72 16 2 N -0.27 -3.57 3.74 -355.72 -1.33 -4.90 16 3 N -0.12 -2.55 13.17 37.02 0.49 -2.06 16 4 N -0.31 -7.04 12.41 -58.26 -0.72 -7.76 16 5 C -0.06 -0.89 10.76 83.73 0.90 0.01 16 6 C 0.00 -0.03 4.92 41.36 0.20 0.17 16 7 C 0.13 0.87 5.50 85.56 0.47 1.34 16 8 N -0.53 -5.32 4.80 -900.96 -4.32 -9.65 16 9 C 0.07 0.80 5.42 86.32 0.47 1.27 16 10 C -0.12 -2.18 5.68 30.65 0.17 -2.01 16 11 C 0.14 2.96 2.52 45.07 0.11 3.08 16 12 N -0.71 -16.86 5.08 -442.13 -2.25 -19.11 16 13 C 0.54 19.04 7.82 87.66 0.69 19.73 16 14 O -0.56 -25.26 15.52 -3.03 -0.05 -25.30 16 15 C -0.13 -5.06 6.16 71.24 0.44 -4.62 16 16 S -0.15 -8.24 20.57 -56.49 -1.16 -9.40 16 17 C -0.55 -31.05 9.50 67.96 0.65 -30.41 16 18 H 0.08 4.32 7.80 -2.92 -0.02 4.29 16 19 C 0.01 0.74 5.49 84.86 0.47 1.21 16 20 N -0.91 -55.66 13.22 21.65 0.29 -55.37 16 21 Si 1.00 43.26 29.55 68.60 2.03 45.28 16 22 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 23 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 25 C -0.11 -1.61 5.57 30.65 0.17 -1.44 16 26 C 0.06 0.79 4.86 86.33 0.42 1.21 16 27 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.11 0.25 8.14 -2.38 -0.02 0.23 16 29 H 0.12 -0.15 7.22 -2.39 -0.02 -0.16 16 30 H 0.20 2.20 8.06 -2.91 -0.02 2.18 16 31 H 0.08 0.43 8.08 -2.39 -0.02 0.42 16 32 H 0.12 0.28 7.32 -2.39 -0.02 0.26 16 33 H 0.10 0.86 8.12 -2.39 -0.02 0.84 16 34 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.05 1.22 8.14 -2.39 -0.02 1.21 16 37 H 0.06 1.58 7.58 -2.39 -0.02 1.56 16 38 H 0.41 7.14 8.61 -92.71 -0.80 6.34 16 39 H 0.11 3.76 8.14 -2.39 -0.02 3.75 16 40 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16 41 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 42 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.07 1.09 5.84 -2.39 -0.01 1.07 16 Total: -1.00 -82.82 383.16 -0.24 -83.05 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 0.21 Total: 13.96 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: 6.59 Total: -8.74 kcal Atomic # 7 Polarization: -91.00 SS G_CDS: -7.85 Total: -98.85 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.05 Total: -25.30 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: -8.24 SS G_CDS: -1.16 Total: -9.40 kcal Total: -82.82 -0.24 -83.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226145686.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.625 kcal (2) G-P(sol) polarization free energy of solvation -82.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds