Wall clock time and date at job start Sat Apr 11 2020 05:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35310 * 125.87017 * 2 1 4 4 C 1.35354 * 106.17533 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.75025 * 180.02562 * 4 3 2 6 6 N 1.46901 * 109.46921 * 94.99969 * 5 4 3 7 7 C 1.46839 * 111.00222 * 294.20814 * 6 5 4 8 8 C 1.53034 * 109.52552 * 174.16216 * 7 6 5 9 9 C 1.53123 * 109.28182 * 59.17780 * 8 7 6 10 10 N 1.46496 * 109.52764 * 182.43939 * 9 8 7 11 11 C 1.34771 * 120.00536 * 274.68766 * 10 9 8 12 12 O 1.21285 * 119.99528 * 359.97438 * 11 10 9 13 13 C 1.50698 * 120.00247 * 180.02562 * 11 10 9 14 14 S 1.80996 * 109.47125 * 179.97438 * 13 11 10 15 15 C 1.76193 * 100.00209 * 179.97438 * 14 13 11 16 16 H 1.08008 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.38795 * 120.00616 * 179.97438 * 15 14 13 18 18 N 1.31631 * 119.99759 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00704 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46869 * 59.99844 * 19 17 15 21 21 H 1.48495 * 109.47584 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.46957 * 300.00157 * 19 17 15 23 23 C 1.53120 * 109.16070 * 302.35293 * 9 8 7 24 24 C 1.46849 * 110.99649 * 169.99608 * 6 5 4 25 25 N 1.33765 * 106.49671 * 0.26081 * 4 3 2 26 26 N 1.28634 * 108.88492 * 359.56586 * 25 4 3 27 27 H 1.09000 * 109.46894 * 89.99311 * 1 2 3 28 28 H 1.08993 * 109.47301 * 210.00211 * 1 2 3 29 29 H 1.09003 * 109.46787 * 329.99925 * 1 2 3 30 30 H 1.08004 * 126.91492 * 0.05809 * 3 2 1 31 31 H 1.09002 * 109.47060 * 215.00150 * 5 4 3 32 32 H 1.09001 * 109.47380 * 335.00237 * 5 4 3 33 33 H 1.09006 * 109.46266 * 294.17473 * 7 6 5 34 34 H 1.09002 * 109.46276 * 54.14664 * 7 6 5 35 35 H 1.09006 * 109.50444 * 299.24199 * 8 7 6 36 36 H 1.09002 * 109.53860 * 179.13912 * 8 7 6 37 37 H 1.08999 * 109.57140 * 62.27961 * 9 8 7 38 38 H 0.97005 * 119.99320 * 94.68312 * 10 9 8 39 39 H 1.09003 * 109.46979 * 299.99653 * 13 11 10 40 40 H 1.08999 * 109.47035 * 59.99435 * 13 11 10 41 41 H 0.96998 * 120.00623 * 179.97438 * 18 17 15 42 42 H 1.09005 * 109.50142 * 297.71204 * 23 9 8 43 43 H 1.08993 * 109.53791 * 177.61458 * 23 9 8 44 44 H 1.08991 * 109.46839 * 305.85721 * 24 6 5 45 45 H 1.09005 * 109.46224 * 65.84006 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2578 1.0965 0.0000 4 6 3.5322 0.6403 -0.0006 5 6 4.7881 1.4733 -0.0003 6 7 5.2631 1.6424 1.3795 7 6 4.3123 2.4342 2.1701 8 6 4.7649 2.4670 3.6316 9 6 6.1640 3.0839 3.7139 10 7 6.6266 3.0647 5.1038 11 6 6.2851 4.0635 5.9417 12 8 5.5951 4.9786 5.5448 13 6 6.7615 4.0440 7.3712 14 16 6.1420 5.5097 8.2337 15 6 6.8285 5.2365 9.8332 16 1 7.4286 4.3582 10.0206 17 6 6.5990 6.1503 10.8524 18 7 5.8689 7.2215 10.6237 19 14 7.3261 5.8604 12.5484 20 1 8.8065 5.7988 12.4483 21 1 6.9374 6.9738 13.4507 22 1 6.8132 4.5780 13.0942 23 6 7.1246 2.2689 2.8435 24 6 6.6034 2.2419 1.4048 25 7 3.4576 -0.6952 -0.0067 26 7 2.2192 -1.0431 -0.0006 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.9382 2.1281 0.0009 31 1 5.5560 0.9730 -0.5903 32 1 4.5760 2.4506 -0.4338 33 1 4.2731 3.4510 1.7792 34 1 3.3223 1.9824 2.1066 35 1 4.7912 1.4516 4.0273 36 1 4.0676 3.0674 4.2159 37 1 6.1311 4.1126 3.3551 38 1 7.1788 2.3329 5.4210 39 1 6.3897 3.1466 7.8659 40 1 7.8513 4.0446 7.3910 41 1 5.7082 7.8601 11.3360 42 1 7.1878 1.2504 3.2267 43 1 8.1132 2.7275 2.8639 44 1 7.2776 1.6504 0.7854 45 1 6.5535 3.2596 1.0177 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226152689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:16 Heat of formation + Delta-G solvation = 66.426038 kcal Electronic energy + Delta-G solvation = -26201.308099 eV Core-core repulsion = 22382.324385 eV Total energy + Delta-G solvation = -3818.983714 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -43.57753 -39.88678 -38.47289 -35.55149 -34.71071 -32.62134 -32.41928 -31.21926 -30.79140 -28.99293 -28.36456 -26.40623 -25.45830 -23.50072 -23.17534 -22.37295 -21.26229 -20.28989 -19.98942 -17.81775 -17.57782 -17.13260 -16.51355 -16.27539 -15.62460 -15.49411 -15.13849 -14.92427 -14.79916 -14.76436 -14.10753 -13.88235 -13.84993 -13.61907 -13.41198 -13.21460 -12.91799 -12.67199 -12.58617 -12.29942 -11.95027 -11.88245 -11.52002 -11.39593 -11.12465 -11.03763 -11.03287 -10.85216 -10.77196 -10.64715 -10.39135 -9.81167 -9.58231 -9.35099 -9.05485 -8.82780 -8.59336 -8.23137 -6.49047 -6.20879 -3.91287 1.22218 1.98154 2.17703 3.05462 3.12265 3.24150 3.28122 3.32319 3.66724 3.74597 3.91723 4.14533 4.21493 4.44337 4.45494 4.57024 4.65391 4.72425 4.76204 4.87351 4.98375 5.06784 5.11817 5.14167 5.16682 5.27375 5.34554 5.44363 5.45816 5.54397 5.59474 5.71406 5.75774 5.78834 5.86433 5.92277 6.05603 6.16394 6.17475 6.23900 6.70178 6.75093 6.80932 7.60128 7.76967 8.20769 8.35862 8.65314 9.24357 10.86484 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.021530 B = 0.001857 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.187648 B =15070.571393 C =15745.887349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.295 5.295 3 C -0.047 4.047 4 C -0.008 4.008 5 C 0.141 3.859 6 N -0.533 5.533 7 C 0.059 3.941 8 C -0.126 4.126 9 C 0.147 3.853 10 N -0.734 5.734 11 C 0.533 3.467 12 O -0.519 6.519 13 C -0.154 4.154 14 S -0.061 6.061 15 C -0.536 4.536 16 H 0.072 0.928 17 C 0.073 3.927 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C -0.123 4.123 24 C 0.063 3.937 25 N -0.250 5.250 26 N -0.089 5.089 27 H 0.091 0.909 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.188 0.812 31 H 0.094 0.906 32 H 0.054 0.946 33 H 0.038 0.962 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.398 0.602 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.269 0.731 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.294 -13.238 -24.884 28.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.088 5.088 3 C -0.199 4.199 4 C -0.147 4.147 5 C 0.012 3.988 6 N -0.258 5.258 7 C -0.069 4.069 8 C -0.165 4.165 9 C 0.042 3.958 10 N -0.387 5.387 11 C 0.319 3.681 12 O -0.394 6.394 13 C -0.305 4.305 14 S 0.166 5.834 15 C -0.684 4.684 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.504 5.504 19 Si 0.745 3.255 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.199 1.199 23 C -0.162 4.162 24 C -0.065 4.065 25 N -0.117 5.117 26 N -0.068 5.068 27 H 0.109 0.891 28 H 0.121 0.879 29 H 0.118 0.882 30 H 0.205 0.795 31 H 0.112 0.888 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.232 0.768 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.100 0.900 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.497 -13.536 -25.256 29.619 hybrid contribution 1.084 0.371 1.432 1.834 sum -6.413 -13.165 -23.824 27.965 Atomic orbital electron populations 1.22287 0.72679 1.06136 1.04975 1.47239 1.09438 1.04916 1.47172 1.23435 0.91069 0.94751 1.10642 1.21760 0.94636 0.91544 1.06782 1.20198 0.92092 0.96235 0.90283 1.61851 1.02494 1.50681 1.10800 1.22080 0.95921 0.95311 0.93625 1.21979 0.97194 1.01917 0.95456 1.20908 0.93147 1.00210 0.81569 1.46069 1.55513 1.26287 1.10869 1.20303 0.79435 0.81192 0.87146 1.90687 1.36819 1.34731 1.77148 1.23539 1.04545 1.07483 0.94891 1.85358 1.68231 1.22833 1.06986 1.22834 1.37863 1.11590 0.96093 0.90983 1.24991 0.95020 0.94458 0.99129 1.70007 1.36264 1.10539 1.33541 0.86225 0.79381 0.77983 0.81919 1.19938 1.20824 1.19935 1.21862 0.98589 1.01289 0.94412 1.22008 0.89728 0.97802 0.96998 1.75069 1.09140 1.11988 1.15529 1.78350 0.96508 1.12096 1.19890 0.89058 0.87936 0.88196 0.79452 0.88754 0.92832 0.94395 0.90856 0.91027 0.90671 0.89768 0.76823 0.89264 0.89256 0.92154 0.90393 0.90609 0.89990 0.94308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.21 11.39 59.85 0.68 0.89 16 2 N -0.29 -2.26 3.74 -68.06 -0.25 -2.51 16 3 C -0.05 -0.34 10.40 -17.05 -0.18 -0.52 16 4 C -0.01 -0.08 5.97 -82.78 -0.49 -0.57 16 5 C 0.14 1.10 5.53 -4.97 -0.03 1.08 16 6 N -0.53 -4.84 4.65 -236.11 -1.10 -5.94 16 7 C 0.06 0.57 5.29 -3.84 -0.02 0.55 16 8 C -0.13 -1.49 5.67 -26.65 -0.15 -1.64 16 9 C 0.15 1.74 2.52 -67.81 -0.17 1.57 16 10 N -0.73 -9.88 5.08 -53.69 -0.27 -10.15 16 11 C 0.53 9.90 7.82 -10.99 -0.09 9.82 16 12 O -0.52 -11.64 15.52 5.55 0.09 -11.55 16 13 C -0.15 -3.12 6.16 36.00 0.22 -2.90 16 14 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 15 C -0.54 -15.32 9.50 30.94 0.29 -15.02 16 16 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 17 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 18 N -0.87 -26.22 13.22 55.49 0.73 -25.48 16 19 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 C -0.12 -1.09 5.57 -26.65 -0.15 -1.24 16 24 C 0.06 0.50 5.46 -3.83 -0.02 0.48 16 25 N -0.25 -3.12 12.41 33.29 0.41 -2.70 16 26 N -0.09 -1.01 13.16 60.35 0.79 -0.22 16 27 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 28 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.10 0.05 8.14 -51.93 -0.42 -0.37 16 30 H 0.19 0.71 8.06 -52.48 -0.42 0.28 16 31 H 0.09 0.70 7.99 -51.93 -0.41 0.28 16 32 H 0.05 0.32 8.12 -51.93 -0.42 -0.10 16 33 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.70 6.24 -51.93 -0.32 0.38 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.08 1.16 7.58 -51.93 -0.39 0.77 16 38 H 0.40 4.28 8.61 -40.82 -0.35 3.93 16 39 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 40 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 41 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.08 0.55 8.01 -51.93 -0.42 0.13 16 45 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 LS Contribution 386.28 15.07 5.82 5.82 Total: -1.00 -37.91 386.28 -8.15 -46.06 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -6.94 Total: -0.40 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -0.20 Total: -5.50 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: 0.32 Total: -47.01 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.09 Total: -11.55 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.91 -8.15 -46.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226152689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.483 kcal (2) G-P(sol) polarization free energy of solvation -37.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds