Wall clock time and date at job start Sat Apr 11 2020 05:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35310 * 125.87017 * 2 1 4 4 C 1.35354 * 106.17533 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.75025 * 180.02562 * 4 3 2 6 6 N 1.46901 * 109.46921 * 94.99969 * 5 4 3 7 7 C 1.46839 * 111.00222 * 294.20814 * 6 5 4 8 8 C 1.53034 * 109.52552 * 174.16216 * 7 6 5 9 9 C 1.53123 * 109.28182 * 59.17780 * 8 7 6 10 10 N 1.46496 * 109.52764 * 182.43939 * 9 8 7 11 11 C 1.34771 * 120.00536 * 274.68766 * 10 9 8 12 12 O 1.21285 * 119.99528 * 359.97438 * 11 10 9 13 13 C 1.50698 * 120.00247 * 180.02562 * 11 10 9 14 14 S 1.80996 * 109.47125 * 179.97438 * 13 11 10 15 15 C 1.76193 * 100.00209 * 179.97438 * 14 13 11 16 16 H 1.08008 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.38795 * 120.00616 * 179.97438 * 15 14 13 18 18 N 1.31631 * 119.99759 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00704 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46869 * 59.99844 * 19 17 15 21 21 H 1.48495 * 109.47584 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.46957 * 300.00157 * 19 17 15 23 23 C 1.53120 * 109.16070 * 302.35293 * 9 8 7 24 24 C 1.46849 * 110.99649 * 169.99608 * 6 5 4 25 25 N 1.33765 * 106.49671 * 0.26081 * 4 3 2 26 26 N 1.28634 * 108.88492 * 359.56586 * 25 4 3 27 27 H 1.09000 * 109.46894 * 89.99311 * 1 2 3 28 28 H 1.08993 * 109.47301 * 210.00211 * 1 2 3 29 29 H 1.09003 * 109.46787 * 329.99925 * 1 2 3 30 30 H 1.08004 * 126.91492 * 0.05809 * 3 2 1 31 31 H 1.09002 * 109.47060 * 215.00150 * 5 4 3 32 32 H 1.09001 * 109.47380 * 335.00237 * 5 4 3 33 33 H 1.09006 * 109.46266 * 294.17473 * 7 6 5 34 34 H 1.09002 * 109.46276 * 54.14664 * 7 6 5 35 35 H 1.09006 * 109.50444 * 299.24199 * 8 7 6 36 36 H 1.09002 * 109.53860 * 179.13912 * 8 7 6 37 37 H 1.08999 * 109.57140 * 62.27961 * 9 8 7 38 38 H 0.97005 * 119.99320 * 94.68312 * 10 9 8 39 39 H 1.09003 * 109.46979 * 299.99653 * 13 11 10 40 40 H 1.08999 * 109.47035 * 59.99435 * 13 11 10 41 41 H 0.96998 * 120.00623 * 179.97438 * 18 17 15 42 42 H 1.09005 * 109.50142 * 297.71204 * 23 9 8 43 43 H 1.08993 * 109.53791 * 177.61458 * 23 9 8 44 44 H 1.08991 * 109.46839 * 305.85721 * 24 6 5 45 45 H 1.09005 * 109.46224 * 65.84006 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2578 1.0965 0.0000 4 6 3.5322 0.6403 -0.0006 5 6 4.7881 1.4733 -0.0003 6 7 5.2631 1.6424 1.3795 7 6 4.3123 2.4342 2.1701 8 6 4.7649 2.4670 3.6316 9 6 6.1640 3.0839 3.7139 10 7 6.6266 3.0647 5.1038 11 6 6.2851 4.0635 5.9417 12 8 5.5951 4.9786 5.5448 13 6 6.7615 4.0440 7.3712 14 16 6.1420 5.5097 8.2337 15 6 6.8285 5.2365 9.8332 16 1 7.4286 4.3582 10.0206 17 6 6.5990 6.1503 10.8524 18 7 5.8689 7.2215 10.6237 19 14 7.3261 5.8604 12.5484 20 1 8.8065 5.7988 12.4483 21 1 6.9374 6.9738 13.4507 22 1 6.8132 4.5780 13.0942 23 6 7.1246 2.2689 2.8435 24 6 6.6034 2.2419 1.4048 25 7 3.4576 -0.6952 -0.0067 26 7 2.2192 -1.0431 -0.0006 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.9382 2.1281 0.0009 31 1 5.5560 0.9730 -0.5903 32 1 4.5760 2.4506 -0.4338 33 1 4.2731 3.4510 1.7792 34 1 3.3223 1.9824 2.1066 35 1 4.7912 1.4516 4.0273 36 1 4.0676 3.0674 4.2159 37 1 6.1311 4.1126 3.3551 38 1 7.1788 2.3329 5.4210 39 1 6.3897 3.1466 7.8659 40 1 7.8513 4.0446 7.3910 41 1 5.7082 7.8601 11.3360 42 1 7.1878 1.2504 3.2267 43 1 8.1132 2.7275 2.8639 44 1 7.2776 1.6504 0.7854 45 1 6.5535 3.2596 1.0177 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226152689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:14 Heat of formation + Delta-G solvation = 36.924212 kcal Electronic energy + Delta-G solvation = -26202.587394 eV Core-core repulsion = 22382.324385 eV Total energy + Delta-G solvation = -3820.263010 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.19714 -41.02447 -39.55103 -36.45624 -35.43302 -34.58400 -33.56997 -32.09260 -31.63842 -30.29064 -28.82564 -27.70027 -27.10135 -24.28127 -24.05333 -22.95865 -21.90443 -21.62896 -20.91411 -19.76889 -18.07649 -17.88524 -17.75276 -17.41145 -16.87749 -16.54630 -16.35519 -16.18421 -15.85047 -15.66349 -15.47772 -14.81316 -14.70235 -14.66766 -14.35404 -14.04116 -13.93387 -13.59847 -13.52249 -13.36960 -13.16842 -12.90297 -12.85558 -12.66250 -12.60756 -12.31565 -12.17178 -11.90441 -11.75964 -11.62021 -11.52828 -11.12894 -10.98794 -10.87196 -10.28186 -10.22941 -10.04099 -9.24320 -8.66296 -8.34476 -6.12426 0.65056 1.27221 1.43846 1.46607 1.47217 1.56954 1.60172 1.63111 2.26393 2.31369 2.99370 3.02494 3.32292 3.38323 3.72834 3.78643 3.85600 3.97725 4.04412 4.09126 4.17297 4.25202 4.30711 4.33187 4.40378 4.46557 4.51298 4.55072 4.63327 4.66947 4.67730 4.71739 4.91262 4.93354 5.02738 5.05874 5.16863 5.17820 5.29957 5.41670 5.55288 5.68991 6.08370 6.13981 6.19700 6.54283 7.06650 7.27136 7.54556 8.74434 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.021530 B = 0.001857 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.187648 B =15070.571393 C =15745.887349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.289 5.289 3 C -0.036 4.036 4 C -0.026 4.026 5 C 0.144 3.856 6 N -0.545 5.545 7 C 0.068 3.932 8 C -0.121 4.121 9 C 0.146 3.854 10 N -0.710 5.710 11 C 0.536 3.464 12 O -0.564 6.564 13 C -0.131 4.131 14 S -0.149 6.149 15 C -0.548 4.548 16 H 0.082 0.918 17 C 0.013 3.987 18 N -0.911 5.911 19 Si 0.998 3.002 20 H -0.262 1.262 21 H -0.278 1.278 22 H -0.263 1.263 23 C -0.114 4.114 24 C 0.063 3.937 25 N -0.294 5.294 26 N -0.128 5.128 27 H 0.110 0.890 28 H 0.103 0.897 29 H 0.126 0.874 30 H 0.224 0.776 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.047 0.953 37 H 0.066 0.934 38 H 0.415 0.585 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.271 0.729 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.100 0.900 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.552 -14.218 -25.428 29.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.082 5.082 3 C -0.189 4.189 4 C -0.167 4.167 5 C 0.015 3.985 6 N -0.270 5.270 7 C -0.060 4.060 8 C -0.160 4.160 9 C 0.042 3.958 10 N -0.363 5.363 11 C 0.321 3.679 12 O -0.442 6.442 13 C -0.282 4.282 14 S 0.078 5.922 15 C -0.696 4.696 16 H 0.100 0.900 17 C -0.192 4.192 18 N -0.547 5.547 19 Si 0.820 3.180 20 H -0.187 1.187 21 H -0.203 1.203 22 H -0.187 1.187 23 C -0.152 4.152 24 C -0.064 4.064 25 N -0.159 5.159 26 N -0.107 5.107 27 H 0.129 0.871 28 H 0.122 0.878 29 H 0.144 0.856 30 H 0.240 0.760 31 H 0.115 0.885 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.252 0.748 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.080 0.920 42 H 0.100 0.900 43 H 0.106 0.894 44 H 0.118 0.882 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.747 -14.595 -25.834 30.429 hybrid contribution 0.790 0.630 1.481 1.792 sum -5.958 -13.965 -24.353 28.698 Atomic orbital electron populations 1.22714 0.70079 1.07547 1.06703 1.47635 1.10929 1.04343 1.45287 1.23988 0.90357 0.95989 1.08590 1.22147 0.96199 0.90920 1.07391 1.20254 0.91691 0.97041 0.89494 1.61808 1.02778 1.50713 1.11713 1.21934 0.96117 0.95797 0.92198 1.21878 0.96467 1.00837 0.96839 1.21061 0.94247 0.99924 0.80608 1.45868 1.54300 1.25090 1.11039 1.20032 0.79163 0.81725 0.86945 1.90676 1.39037 1.36792 1.77703 1.23387 1.05401 1.04114 0.95306 1.85518 1.69783 1.28146 1.08729 1.23177 1.37956 1.12073 0.96364 0.89998 1.26126 0.95238 0.93952 1.03852 1.70172 1.37780 1.11689 1.35062 0.85011 0.78869 0.78247 0.75916 1.18655 1.20336 1.18729 1.21821 0.98213 1.00802 0.94353 1.22060 0.89457 0.98532 0.96393 1.74993 1.10046 1.13837 1.17071 1.78258 0.96785 1.13665 1.21978 0.87134 0.87808 0.85587 0.75982 0.88496 0.90598 0.93850 0.90803 0.91470 0.93432 0.91593 0.74846 0.87522 0.87255 0.91983 0.89969 0.89353 0.88211 0.93665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.23 11.39 127.77 1.46 1.69 16 2 N -0.29 -4.05 3.74 -369.24 -1.38 -5.44 16 3 C -0.04 -0.45 10.40 83.49 0.87 0.42 16 4 C -0.03 -0.47 5.97 41.60 0.25 -0.22 16 5 C 0.14 1.96 5.53 85.56 0.47 2.44 16 6 N -0.54 -8.84 4.65 -900.93 -4.19 -13.03 16 7 C 0.07 1.22 5.29 86.33 0.46 1.68 16 8 C -0.12 -2.79 5.67 30.65 0.17 -2.61 16 9 C 0.15 3.30 2.52 45.07 0.11 3.42 16 10 N -0.71 -18.18 5.08 -442.16 -2.25 -20.43 16 11 C 0.54 19.77 7.82 87.66 0.69 20.45 16 12 O -0.56 -25.88 15.52 -3.05 -0.05 -25.92 16 13 C -0.13 -5.22 6.16 71.24 0.44 -4.78 16 14 S -0.15 -8.30 20.57 -56.49 -1.16 -9.46 16 15 C -0.55 -31.44 9.50 67.95 0.65 -30.79 16 16 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 17 C 0.01 0.75 5.49 84.86 0.47 1.22 16 18 N -0.91 -56.01 13.22 21.65 0.29 -55.73 16 19 Si 1.00 43.69 29.55 68.60 2.03 45.72 16 20 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 21 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 23 C -0.11 -1.74 5.57 30.65 0.17 -1.57 16 24 C 0.06 0.84 5.46 86.33 0.47 1.32 16 25 N -0.29 -7.30 12.41 -48.60 -0.60 -7.90 16 26 N -0.13 -2.91 13.16 37.02 0.49 -2.42 16 27 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 28 H 0.10 0.34 8.14 -2.39 -0.02 0.33 16 29 H 0.13 -0.23 8.14 -2.39 -0.02 -0.25 16 30 H 0.22 0.92 8.06 -2.91 -0.02 0.90 16 31 H 0.10 1.26 7.99 -2.39 -0.02 1.24 16 32 H 0.08 0.69 8.12 -2.39 -0.02 0.67 16 33 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 34 H 0.07 1.32 6.24 -2.39 -0.01 1.30 16 35 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.07 1.79 7.58 -2.39 -0.02 1.77 16 38 H 0.41 7.95 8.61 -92.70 -0.80 7.15 16 39 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 40 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 41 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 42 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 43 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.10 1.03 8.01 -2.39 -0.02 1.01 16 45 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 Total: -1.00 -86.10 386.28 0.04 -86.06 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.20 Total: 15.92 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: 6.67 Total: -7.37 kcal Atomic # 7 Polarization: -97.30 SS G_CDS: -7.64 Total: -104.95 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.05 Total: -25.92 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: -8.30 SS G_CDS: -1.16 Total: -9.46 kcal Total: -86.10 0.04 -86.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226152689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.981 kcal (2) G-P(sol) polarization free energy of solvation -86.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds