Wall clock time and date at job start Sat Apr 11 2020 05:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46505 * 119.99462 * 2 1 4 4 C 1.52998 * 109.47273 * 90.00294 * 3 2 1 5 5 H 1.09003 * 112.78098 * 284.19055 * 4 3 2 6 6 C 1.53503 * 113.47832 * 153.37782 * 4 3 2 7 7 C 1.53515 * 83.57518 * 219.20617 * 6 4 3 8 8 N 1.47475 * 87.92866 * 26.02653 * 7 6 4 9 9 C 1.46909 * 110.99674 * 221.29437 * 8 7 6 10 10 C 1.50698 * 109.47231 * 265.97027 * 9 8 7 11 11 C 1.35361 * 126.74829 * 95.29346 * 10 9 8 12 12 N 1.35313 * 106.17197 * 180.12377 * 11 10 9 13 13 C 1.46499 * 125.86684 * 179.90335 * 12 11 10 14 14 N 1.28712 * 108.26322 * 359.64606 * 12 11 10 15 15 N 1.28634 * 110.18224 * 0.22427 * 14 12 11 16 16 C 1.34771 * 120.00577 * 180.02562 * 2 1 3 17 17 O 1.21273 * 120.00257 * 180.02562 * 16 2 1 18 18 C 1.50707 * 119.99649 * 359.97438 * 16 2 1 19 19 S 1.81003 * 109.47073 * 180.02562 * 18 16 2 20 20 C 1.76198 * 100.00067 * 180.02562 * 19 18 16 21 21 H 1.07997 * 119.99942 * 0.02562 * 20 19 18 22 22 C 1.38798 * 119.99890 * 179.97438 * 20 19 18 23 23 N 1.31631 * 119.99809 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00254 * 0.02562 * 22 20 19 25 25 H 1.48495 * 109.47063 * 89.99608 * 24 22 20 26 26 H 1.48496 * 109.47199 * 210.00254 * 24 22 20 27 27 H 1.48507 * 109.46757 * 329.99943 * 24 22 20 28 28 H 1.08997 * 109.47148 * 90.00187 * 1 2 3 29 29 H 1.09008 * 109.46705 * 209.99953 * 1 2 3 30 30 H 1.08992 * 109.47524 * 329.99921 * 1 2 3 31 31 H 1.09002 * 109.47255 * 329.99783 * 3 2 1 32 32 H 1.09002 * 109.46701 * 209.99666 * 3 2 1 33 33 H 1.09005 * 114.17198 * 332.85289 * 6 4 3 34 34 H 1.09002 * 114.17003 * 105.37439 * 6 4 3 35 35 H 1.09001 * 113.47653 * 271.25637 * 7 6 4 36 36 H 1.09000 * 113.47590 * 140.78989 * 7 6 4 37 37 H 1.08998 * 109.47178 * 145.97037 * 9 8 7 38 38 H 1.09003 * 109.47059 * 25.97423 * 9 8 7 39 39 H 1.07997 * 126.91163 * 0.02562 * 11 10 9 40 40 H 1.09002 * 109.47391 * 269.71876 * 13 12 11 41 41 H 1.09001 * 109.46813 * 149.71932 * 13 12 11 42 42 H 1.09004 * 109.47041 * 29.72059 * 13 12 11 43 43 H 1.08995 * 109.47251 * 300.00261 * 18 16 2 44 44 H 1.08999 * 109.46934 * 60.00607 * 18 16 2 45 45 H 0.97002 * 119.99882 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 1.4425 5 1 1.5628 2.1183 1.9226 6 6 3.6940 2.5994 1.5994 7 6 3.8976 1.7909 2.8884 8 7 3.1443 0.6926 2.2550 9 6 2.2218 0.0666 3.2118 10 6 2.8900 -1.1252 3.8475 11 6 3.5508 -1.1487 5.0286 12 7 3.9826 -2.4205 5.1936 13 6 4.7518 -2.9246 6.3339 14 7 3.5966 -3.1123 4.1792 15 7 2.9424 -2.3690 3.3581 16 6 2.1390 -1.1671 -0.0005 17 8 3.3517 -1.1670 -0.0001 18 6 1.3855 -2.4723 -0.0005 19 16 2.5618 -3.8480 -0.0005 20 6 1.4418 -5.2082 -0.0013 21 1 0.3765 -5.0305 -0.0020 22 6 1.9286 -6.5080 -0.0020 23 7 1.0919 -7.5242 -0.0021 24 14 3.7711 -6.8153 -0.0015 25 1 4.2588 -6.8977 1.3987 26 1 4.0602 -8.0921 -0.7024 27 1 4.4591 -5.7002 -0.7005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5139 30 1 -0.3634 0.8899 0.5138 31 1 1.6083 2.0285 -0.5139 32 1 3.1499 1.1385 -0.5138 33 1 4.4606 2.4332 0.8425 34 1 3.4704 3.6539 1.7612 35 1 3.3937 2.2202 3.7544 36 1 4.9407 1.5444 3.0862 37 1 1.3214 -0.2572 2.6898 38 1 1.9545 0.7881 3.9839 39 1 3.7042 -0.3190 5.7027 40 1 5.8171 -2.8206 6.1281 41 1 4.5141 -3.9760 6.4961 42 1 4.4964 -2.3525 7.2259 43 1 0.7592 -2.5302 0.8896 44 1 0.7586 -2.5299 -0.8903 45 1 1.4321 -8.4325 -0.0023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230814922.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:58 Heat of formation + Delta-G solvation = 126.811778 kcal Electronic energy + Delta-G solvation = -28472.746885 eV Core-core repulsion = 24656.381693 eV Total energy + Delta-G solvation = -3816.365192 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.90433 -40.49080 -38.66103 -34.98955 -34.58078 -32.50623 -32.19112 -30.29584 -29.27541 -27.92015 -27.69075 -26.10178 -25.34585 -24.74993 -23.22429 -21.76428 -20.90722 -19.80066 -18.99910 -17.40155 -17.13852 -16.56950 -16.32487 -16.00710 -15.78223 -15.66776 -14.86586 -14.71153 -14.47429 -14.14216 -13.84413 -13.53949 -13.24950 -13.14830 -12.97975 -12.90454 -12.75175 -12.54913 -12.23472 -11.91228 -11.76789 -11.54935 -11.48865 -11.36550 -11.01965 -10.99734 -10.79808 -10.65549 -10.29812 -10.23557 -9.73396 -9.63451 -9.05222 -8.97859 -8.82492 -8.75389 -8.19938 -8.11722 -6.51257 -6.06091 -3.69155 1.83348 2.56474 2.89225 3.04388 3.39653 3.45497 3.53982 3.70396 3.86665 4.07115 4.31548 4.42483 4.56299 4.59833 4.65485 4.87826 4.89671 4.93700 5.04372 5.09188 5.11345 5.17561 5.23956 5.27720 5.30136 5.34282 5.43529 5.50445 5.54974 5.56775 5.68903 5.70054 5.80699 5.94510 6.03884 6.06853 6.13743 6.33860 6.34196 6.41718 6.79333 6.89000 7.06345 7.81038 8.17516 8.64232 8.92621 8.95848 9.42556 11.03834 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.009721 B = 0.005124 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2879.743003 B = 5463.500887 C = 7512.851533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.627 5.627 3 C 0.138 3.862 4 C 0.010 3.990 5 H 0.074 0.926 6 C -0.135 4.135 7 C -0.005 4.005 8 N -0.431 5.431 9 C 0.110 3.890 10 C -0.012 4.012 11 C -0.061 4.061 12 N -0.304 5.304 13 C 0.085 3.915 14 N -0.074 5.074 15 N -0.208 5.208 16 C 0.538 3.462 17 O -0.490 6.490 18 C -0.114 4.114 19 S -0.124 6.124 20 C -0.511 4.511 21 H 0.083 0.917 22 C 0.095 3.905 23 N -0.889 5.889 24 Si 0.856 3.144 25 H -0.267 1.267 26 H -0.279 1.279 27 H -0.237 1.237 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.054 0.946 39 H 0.179 0.821 40 H 0.087 0.913 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.390 23.565 11.795 26.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.364 5.364 3 C 0.014 3.986 4 C -0.101 4.101 5 H 0.092 0.908 6 C -0.173 4.173 7 C -0.134 4.134 8 N -0.154 5.154 9 C -0.020 4.020 10 C -0.151 4.151 11 C -0.212 4.212 12 N -0.097 5.097 13 C -0.057 4.057 14 N -0.054 5.054 15 N -0.075 5.075 16 C 0.325 3.675 17 O -0.362 6.362 18 C -0.264 4.264 19 S 0.103 5.897 20 C -0.659 4.659 21 H 0.101 0.899 22 C -0.112 4.112 23 N -0.527 5.527 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.205 1.205 27 H -0.161 1.161 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.072 0.928 39 H 0.196 0.804 40 H 0.105 0.895 41 H 0.119 0.881 42 H 0.111 0.889 43 H 0.107 0.893 44 H 0.102 0.898 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.520 21.335 10.853 24.360 hybrid contribution -1.307 1.166 1.421 2.256 sum 3.213 22.501 12.274 25.832 Atomic orbital electron populations 1.21729 0.80376 1.02664 1.01549 1.47742 1.06145 1.05675 1.76857 1.21295 0.98135 0.84991 0.94202 1.23851 0.96516 0.92684 0.97057 0.90769 1.23135 0.97931 0.97738 0.98518 1.23835 1.01134 0.92312 0.96139 1.69107 1.15834 1.16936 1.13475 1.20765 0.95291 0.91587 0.94318 1.21649 1.04359 0.95435 0.93663 1.23139 1.06404 0.89467 1.02210 1.47341 1.37267 1.07459 1.17594 1.22151 0.96029 1.02572 0.84975 1.78609 1.12863 1.20533 0.93394 1.75450 1.12120 1.00697 1.19197 1.20050 0.87980 0.84056 0.75405 1.90681 1.13365 1.86285 1.45829 1.23211 1.02961 0.95910 1.04347 1.84745 1.11286 0.96622 1.97091 1.22393 0.95043 0.91327 1.57124 0.89879 1.24645 0.98157 0.94916 0.93509 1.69959 1.34564 0.98665 1.49517 0.86736 0.86003 0.79259 0.79858 1.19243 1.20500 1.16066 0.92927 0.90902 0.91943 0.90886 0.89400 0.88601 0.90791 0.91786 0.89997 0.89497 0.92775 0.80420 0.89495 0.88146 0.88913 0.89273 0.89832 0.92363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.88 10.24 59.85 0.61 1.50 16 2 N -0.63 -8.98 2.63 -181.57 -0.48 -9.45 16 3 C 0.14 1.61 5.58 -4.04 -0.02 1.58 16 4 C 0.01 0.10 3.34 -71.45 -0.24 -0.14 16 5 H 0.07 0.63 7.91 -51.93 -0.41 0.22 16 6 C -0.13 -1.15 8.00 -26.20 -0.21 -1.36 16 7 C -0.01 -0.05 7.71 -7.55 -0.06 -0.11 16 8 N -0.43 -5.69 4.92 -237.97 -1.17 -6.86 16 9 C 0.11 1.45 5.38 -4.97 -0.03 1.42 16 10 C -0.01 -0.19 6.83 -82.78 -0.57 -0.76 16 11 C -0.06 -0.77 11.55 -17.04 -0.20 -0.96 16 12 N -0.30 -4.29 3.74 -68.05 -0.25 -4.55 16 13 C 0.08 0.69 11.39 59.85 0.68 1.37 16 14 N -0.07 -1.48 13.16 60.35 0.79 -0.69 16 15 N -0.21 -4.37 12.41 33.29 0.41 -3.96 16 16 C 0.54 10.56 7.18 -10.98 -0.08 10.48 16 17 O -0.49 -11.37 14.87 5.56 0.08 -11.28 16 18 C -0.11 -2.49 4.71 36.01 0.17 -2.32 16 19 S -0.12 -3.44 18.55 -107.50 -1.99 -5.43 16 20 C -0.51 -15.82 10.04 30.94 0.31 -15.51 16 21 H 0.08 2.68 8.03 -52.49 -0.42 2.26 16 22 C 0.09 2.97 5.50 -17.43 -0.10 2.88 16 23 N -0.89 -28.45 13.97 55.49 0.78 -27.67 16 24 Si 0.86 23.71 27.74 -169.99 -4.72 18.99 16 25 H -0.27 -7.41 7.11 56.52 0.40 -7.01 16 26 H -0.28 -7.38 7.11 56.52 0.40 -6.98 16 27 H -0.24 -6.57 6.74 56.52 0.38 -6.19 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.87 6.44 -51.92 -0.33 0.54 16 30 H 0.06 0.50 8.07 -51.93 -0.42 0.08 16 31 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 32 H 0.09 1.23 7.15 -51.93 -0.37 0.86 16 33 H 0.10 0.92 7.94 -51.93 -0.41 0.51 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.48 7.42 -51.93 -0.39 0.10 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 1.25 7.89 -51.93 -0.41 0.84 16 38 H 0.05 0.53 7.30 -51.93 -0.38 0.15 16 39 H 0.18 1.41 8.06 -52.49 -0.42 0.99 16 40 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.09 1.93 7.40 -51.92 -0.38 1.55 16 44 H 0.08 1.74 8.11 -51.92 -0.42 1.32 16 45 H 0.27 7.95 8.31 -40.82 -0.34 7.62 16 LS Contribution 387.34 15.07 5.84 5.84 Total: -1.00 -41.51 387.34 -7.31 -48.81 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -6.88 Total: -1.81 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: 0.28 Total: -1.93 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: 0.08 Total: -53.18 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.08 Total: -11.28 kcal Atomic # 14 Polarization: 23.71 SS G_CDS: -4.72 Total: 18.99 kcal Atomic # 16 Polarization: -3.44 SS G_CDS: -1.99 Total: -5.43 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -41.51 -7.31 -48.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230814922.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.627 kcal (2) G-P(sol) polarization free energy of solvation -41.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds