Wall clock time and date at job start Sat Apr 11 2020 05:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46494 * 120.00315 * 2 1 4 4 C 1.53002 * 109.46910 * 269.99752 * 3 2 1 5 5 H 1.09005 * 112.74396 * 284.22437 * 4 3 2 6 6 C 1.53512 * 113.47844 * 153.37990 * 4 3 2 7 7 C 1.53514 * 83.57455 * 219.20886 * 6 4 3 8 8 N 1.47473 * 87.93321 * 26.02355 * 7 6 4 9 9 C 1.46899 * 110.99837 * 221.29724 * 8 7 6 10 10 C 1.52998 * 109.47110 * 265.96878 * 9 8 7 11 11 N 1.46500 * 109.47153 * 180.02562 * 10 9 8 12 12 C 1.34436 * 126.82279 * 124.70990 * 11 10 9 13 13 N 1.30836 * 108.07294 * 179.89453 * 12 11 10 14 14 C 1.33240 * 109.83411 * 0.38295 * 13 12 11 15 15 N 1.30721 * 108.94224 * 359.76151 * 14 13 12 16 16 C 1.34778 * 119.99660 * 179.97438 * 2 1 3 17 17 O 1.21282 * 120.00178 * 179.97438 * 16 2 1 18 18 C 1.50703 * 120.00172 * 0.02562 * 16 2 1 19 19 S 1.81000 * 109.47042 * 179.97438 * 18 16 2 20 20 C 1.76199 * 99.99871 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99976 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99949 * 179.97438 * 20 19 18 23 23 N 1.31634 * 119.99752 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 119.99976 * 0.28020 * 22 20 19 25 25 H 1.48501 * 109.46922 * 269.71945 * 24 22 20 26 26 H 1.48496 * 109.47354 * 29.72142 * 24 22 20 27 27 H 1.48501 * 109.47428 * 149.72250 * 24 22 20 28 28 H 1.08998 * 109.47580 * 270.00686 * 1 2 3 29 29 H 1.09003 * 109.47270 * 30.00531 * 1 2 3 30 30 H 1.09009 * 109.47193 * 150.00280 * 1 2 3 31 31 H 1.08996 * 109.47013 * 29.99446 * 3 2 1 32 32 H 1.08997 * 109.47424 * 149.99972 * 3 2 1 33 33 H 1.09002 * 114.17059 * 332.85557 * 6 4 3 34 34 H 1.09002 * 114.17116 * 105.55919 * 6 4 3 35 35 H 1.09004 * 113.47164 * 271.25234 * 7 6 4 36 36 H 1.09000 * 113.47525 * 140.79057 * 7 6 4 37 37 H 1.08997 * 109.47341 * 25.97528 * 9 8 7 38 38 H 1.09005 * 109.47280 * 145.97188 * 9 8 7 39 39 H 1.08997 * 109.47468 * 299.99739 * 10 9 8 40 40 H 1.08993 * 109.46957 * 60.00352 * 10 9 8 41 41 H 1.08000 * 125.96028 * 0.04473 * 12 11 10 42 42 H 1.07997 * 125.52792 * 179.79765 * 14 13 12 43 43 H 1.09005 * 109.47194 * 59.99652 * 18 16 2 44 44 H 1.09000 * 109.46904 * 299.99694 * 18 16 2 45 45 H 0.97005 * 119.99723 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4525 1.7102 -1.4425 5 1 3.2502 1.1429 -1.9222 6 6 2.6016 3.2300 -1.5996 7 6 1.7996 3.0019 -2.8886 8 7 1.2251 1.8004 -2.2552 9 6 1.1443 0.6885 -3.2119 10 6 -0.2427 0.6709 -3.8573 11 7 -0.3235 -0.4383 -4.8109 12 6 -1.2379 -1.4237 -4.8251 13 7 -0.9676 -2.2137 -5.8324 14 6 0.1119 -1.7720 -6.4764 15 7 0.5425 -0.6869 -5.8882 16 6 2.1388 -1.1673 0.0005 17 8 3.3516 -1.1674 0.0001 18 6 1.3852 -2.4724 0.0005 19 16 2.5614 -3.8481 0.0005 20 6 1.4413 -5.2082 0.0013 21 1 0.3760 -5.0305 0.0012 22 6 1.9280 -6.5081 0.0010 23 7 1.0911 -7.5242 0.0021 24 14 3.7705 -6.8156 0.0076 25 1 4.2630 -6.9014 -1.3907 26 1 4.4561 -5.6990 0.7063 27 1 4.0570 -8.0908 0.7125 28 1 -0.3634 0.0001 1.0276 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3634 -0.8901 -0.5138 31 1 1.6084 2.0283 0.5137 32 1 3.1499 1.1383 0.5138 33 1 2.0743 3.8108 -0.8428 34 1 3.6262 3.5633 -1.7646 35 1 2.4234 2.7802 -3.7546 36 1 1.0645 3.7820 -3.0864 37 1 1.9028 0.8176 -3.9839 38 1 1.3140 -0.2532 -2.6897 39 1 -1.0012 0.5417 -3.0853 40 1 -0.4124 1.6125 -4.3794 41 1 -2.0546 -1.5411 -4.1283 42 1 0.5584 -2.2350 -7.3440 43 1 0.7588 -2.5303 -0.8897 44 1 0.7583 -2.5299 0.8903 45 1 1.4313 -8.4327 0.0022 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230818638.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:16 Heat of formation + Delta-G solvation = 81.565255 kcal Electronic energy + Delta-G solvation = -27668.077742 eV Core-core repulsion = 23849.750513 eV Total energy + Delta-G solvation = -3818.327229 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.01029 -41.64859 -40.35028 -36.49300 -35.86989 -34.69933 -32.43318 -32.18172 -31.53110 -29.25542 -27.89276 -27.87968 -27.24503 -24.34692 -24.13906 -22.95682 -22.15427 -21.00379 -20.50713 -19.55408 -18.38396 -18.01741 -17.49097 -17.30254 -17.11244 -16.93435 -16.38497 -16.20311 -15.94743 -15.75088 -15.34703 -14.97866 -14.90428 -14.73519 -14.54221 -14.24704 -13.81772 -13.64333 -13.55556 -13.39238 -13.19305 -13.06492 -12.79565 -12.76486 -12.56714 -12.49808 -12.33699 -11.91640 -11.87304 -11.62603 -11.20691 -11.04273 -10.93262 -10.83056 -10.67319 -10.56609 -10.15970 -9.54667 -9.04141 -8.54508 -6.25548 0.64862 0.94556 1.26981 1.36526 1.42304 1.50710 1.51415 1.98931 2.09261 2.21415 2.65634 2.83904 2.88991 3.41751 3.50387 3.54488 3.59871 3.73956 3.79573 4.04305 4.08829 4.15242 4.16616 4.25233 4.31111 4.32352 4.38543 4.43872 4.45621 4.62014 4.73183 4.77406 4.81307 4.87353 4.99832 5.01984 5.18077 5.24814 5.27743 5.43081 5.56884 5.67912 5.84080 5.94103 6.08099 6.28088 6.90932 7.09417 7.09588 8.57943 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.008891 B = 0.004080 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3148.520355 B = 6861.409327 C = 9060.487237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.598 5.598 3 C 0.135 3.865 4 C 0.010 3.990 5 H 0.048 0.952 6 C -0.120 4.120 7 C -0.002 4.002 8 N -0.447 5.447 9 C 0.022 3.978 10 C 0.143 3.857 11 N -0.381 5.381 12 C 0.260 3.740 13 N -0.583 5.583 14 C 0.189 3.811 15 N -0.352 5.352 16 C 0.527 3.473 17 O -0.566 6.566 18 C -0.101 4.101 19 S -0.182 6.182 20 C -0.526 4.526 21 H 0.062 0.938 22 C 0.049 3.951 23 N -0.914 5.914 24 Si 0.910 3.090 25 H -0.266 1.266 26 H -0.238 1.238 27 H -0.256 1.256 28 H 0.068 0.932 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.118 0.882 32 H 0.067 0.933 33 H 0.119 0.881 34 H 0.083 0.917 35 H 0.060 0.940 36 H 0.110 0.890 37 H 0.036 0.964 38 H 0.048 0.952 39 H 0.138 0.862 40 H 0.102 0.898 41 H 0.257 0.743 42 H 0.235 0.765 43 H 0.101 0.899 44 H 0.110 0.890 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.599 27.073 -5.138 28.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.330 5.330 3 C 0.012 3.988 4 C -0.101 4.101 5 H 0.066 0.934 6 C -0.158 4.158 7 C -0.131 4.131 8 N -0.170 5.170 9 C -0.108 4.108 10 C 0.022 3.978 11 N -0.172 5.172 12 C -0.036 4.036 13 N -0.311 5.311 14 C -0.113 4.113 15 N -0.180 5.180 16 C 0.314 3.686 17 O -0.445 6.445 18 C -0.252 4.252 19 S 0.045 5.955 20 C -0.674 4.674 21 H 0.081 0.919 22 C -0.157 4.157 23 N -0.552 5.552 24 Si 0.732 3.268 25 H -0.191 1.191 26 H -0.162 1.162 27 H -0.180 1.180 28 H 0.087 0.913 29 H 0.128 0.872 30 H 0.083 0.917 31 H 0.136 0.864 32 H 0.085 0.915 33 H 0.137 0.863 34 H 0.102 0.898 35 H 0.078 0.922 36 H 0.128 0.872 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.156 0.844 40 H 0.120 0.880 41 H 0.273 0.727 42 H 0.251 0.749 43 H 0.120 0.880 44 H 0.128 0.872 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.126 27.088 -5.090 27.869 hybrid contribution -0.028 -1.383 -0.545 1.486 sum -4.154 25.705 -5.635 26.642 Atomic orbital electron populations 1.22118 0.76922 1.04706 1.03084 1.47704 1.08493 1.04381 1.72449 1.21590 0.97693 0.84363 0.95127 1.23769 0.92025 0.98635 0.95697 0.93407 1.23205 1.01728 0.92678 0.98202 1.23901 0.98313 0.94318 0.96546 1.68702 1.31856 1.02618 1.13785 1.22678 0.96729 0.96209 0.95174 1.21834 0.98981 0.87124 0.89900 1.50685 1.21137 1.22765 1.22653 1.26870 0.95464 0.84405 0.96898 1.70547 1.18884 1.31207 1.10423 1.26484 0.92242 0.91785 1.00823 1.77918 1.17114 1.20899 1.02098 1.20028 0.87258 0.85522 0.75746 1.90673 1.15433 1.87490 1.50928 1.23233 1.01605 0.93945 1.06438 1.84740 1.14044 0.99176 1.97542 1.22408 0.94270 0.92396 1.58319 0.91931 1.25502 1.02470 0.94785 0.92897 1.70009 1.36655 0.99519 1.49046 0.85930 0.80554 0.80229 0.80045 1.19091 1.16160 1.17986 0.91331 0.87181 0.91745 0.86366 0.91460 0.86259 0.89829 0.92163 0.87208 0.94549 0.93363 0.84393 0.87993 0.72731 0.74914 0.88036 0.87199 0.91334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.12 9.96 127.77 1.27 2.39 16 2 N -0.60 -13.78 2.59 -846.77 -2.20 -15.97 16 3 C 0.13 2.49 5.56 86.38 0.48 2.97 16 4 C 0.01 0.16 3.35 42.19 0.14 0.31 16 5 H 0.05 1.19 7.91 -2.38 -0.02 1.17 16 6 C -0.12 -1.16 8.00 30.94 0.25 -0.91 16 7 C 0.00 -0.02 7.71 83.58 0.64 0.62 16 8 N -0.45 -6.10 4.87 -902.16 -4.39 -10.49 16 9 C 0.02 0.41 5.03 86.30 0.43 0.85 16 10 C 0.14 1.98 6.88 86.38 0.59 2.58 16 11 N -0.38 -8.06 3.69 -352.07 -1.30 -9.36 16 12 C 0.26 5.41 12.63 180.36 2.28 7.69 16 13 N -0.58 -15.98 11.19 -203.99 -2.28 -18.26 16 14 C 0.19 4.93 13.03 180.76 2.36 7.28 16 15 N -0.35 -9.45 12.57 -61.24 -0.77 -10.22 16 16 C 0.53 18.34 7.69 87.66 0.67 19.02 16 17 O -0.57 -24.48 15.44 -3.04 -0.05 -24.53 16 18 C -0.10 -3.91 4.71 71.24 0.34 -3.57 16 19 S -0.18 -9.40 18.54 -56.49 -1.05 -10.45 16 20 C -0.53 -31.07 10.04 67.96 0.68 -30.38 16 21 H 0.06 3.88 8.03 -2.91 -0.02 3.85 16 22 C 0.05 2.92 5.50 84.86 0.47 3.39 16 23 N -0.91 -56.23 13.97 21.65 0.30 -55.93 16 24 Si 0.91 45.92 27.74 68.60 1.90 47.82 16 25 H -0.27 -13.24 7.11 99.48 0.71 -12.53 16 26 H -0.24 -11.99 6.73 99.48 0.67 -11.32 16 27 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 28 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.11 1.11 7.21 -2.39 -0.02 1.09 16 30 H 0.06 1.07 6.44 -2.38 -0.02 1.05 16 31 H 0.12 1.35 7.81 -2.39 -0.02 1.33 16 32 H 0.07 1.56 7.42 -2.39 -0.02 1.54 16 33 H 0.12 0.68 7.94 -2.39 -0.02 0.66 16 34 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.06 0.79 7.42 -2.38 -0.02 0.77 16 36 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.04 0.85 7.30 -2.39 -0.02 0.84 16 38 H 0.05 1.26 7.89 -2.38 -0.02 1.24 16 39 H 0.14 1.06 8.09 -2.39 -0.02 1.04 16 40 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.26 2.79 8.06 -2.91 -0.02 2.77 16 42 H 0.23 4.55 8.06 -2.91 -0.02 4.52 16 43 H 0.10 3.70 7.40 -2.39 -0.02 3.68 16 44 H 0.11 3.92 8.11 -2.39 -0.02 3.90 16 45 H 0.28 15.77 8.31 -92.70 -0.77 15.00 16 Total: -1.00 -84.10 387.59 1.73 -82.38 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 0.95 Total: 12.79 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: 10.61 Total: 12.22 kcal Atomic # 7 Polarization: -109.59 SS G_CDS: -10.63 Total: -120.23 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.05 Total: -24.53 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.90 Total: 47.82 kcal Atomic # 16 Polarization: -9.40 SS G_CDS: -1.05 Total: -10.45 kcal Total: -84.10 1.73 -82.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230818638.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.943 kcal (2) G-P(sol) polarization free energy of solvation -84.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds