Wall clock time and date at job start Sat Apr 11 2020 05:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45201 * 109.47296 * 2 1 4 4 C 1.34232 * 117.00404 * 180.02562 * 3 2 1 5 5 O 1.20823 * 119.99835 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99838 * 180.02562 * 4 3 2 7 7 N 1.46899 * 109.46800 * 174.25659 * 6 4 3 8 8 C 1.46900 * 110.99771 * 160.56225 * 7 6 4 9 9 C 1.50700 * 109.47145 * 287.58628 * 8 7 6 10 10 H 1.07997 * 120.00146 * 358.80353 * 9 8 7 11 11 C 1.37880 * 119.99788 * 178.80474 * 9 8 7 12 12 N 1.31511 * 120.00110 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99818 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47088 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46699 * 119.99877 * 13 11 9 16 16 H 1.48497 * 109.46964 * 240.00169 * 13 11 9 17 17 C 1.46899 * 111.00298 * 284.51886 * 7 6 4 18 18 C 1.50696 * 109.47241 * 169.99968 * 17 7 6 19 19 C 1.38269 * 119.95667 * 104.72312 * 18 17 7 20 20 C 1.38490 * 120.05647 * 180.28055 * 19 18 17 21 21 O 1.36075 * 120.01979 * 180.02562 * 20 19 18 22 22 C 1.42894 * 116.99978 * 359.95754 * 21 20 19 23 23 C 1.39178 * 119.96131 * 359.97438 * 20 19 18 24 24 O 1.35989 * 120.04333 * 180.02562 * 23 20 19 25 25 C 1.38496 * 119.90985 * 0.02562 * 23 20 19 26 26 C 1.38661 * 119.95589 * 285.00321 * 18 17 7 27 27 O 1.35979 * 119.98077 * 359.71425 * 26 18 17 28 28 H 1.09001 * 109.46646 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47202 * 299.99918 * 1 2 3 30 30 H 1.08994 * 109.46907 * 60.00234 * 1 2 3 31 31 H 1.08998 * 109.47202 * 240.00082 * 2 1 3 32 32 H 1.08999 * 109.47547 * 120.00034 * 2 1 3 33 33 H 1.08997 * 109.47233 * 54.25688 * 6 4 3 34 34 H 1.08994 * 109.46768 * 294.25549 * 6 4 3 35 35 H 1.08996 * 109.47107 * 47.58990 * 8 7 6 36 36 H 1.09000 * 109.46862 * 167.59100 * 8 7 6 37 37 H 0.96997 * 120.00071 * 179.97438 * 12 11 9 38 38 H 1.08999 * 109.46883 * 50.00220 * 17 7 6 39 39 H 1.08996 * 109.46647 * 290.00170 * 17 7 6 40 40 H 1.08004 * 119.97488 * 0.25489 * 19 18 17 41 41 H 1.08999 * 109.47615 * 59.99780 * 22 21 20 42 42 H 1.09010 * 109.47409 * 180.02562 * 22 21 20 43 43 H 1.09006 * 109.47015 * 299.99557 * 22 21 20 44 44 H 0.96697 * 114.00048 * 270.02327 * 24 23 20 45 45 H 1.07999 * 120.02552 * 179.97438 * 25 23 20 46 46 H 0.96698 * 113.99237 * 90.00618 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9375 0.0000 7 7 5.3813 2.8632 0.1379 8 6 6.0163 4.1101 -0.3093 9 6 5.9408 4.2017 -1.8116 10 1 5.4855 3.4035 -2.3790 11 6 6.4529 5.3046 -2.4616 12 7 7.0077 6.2763 -1.7707 13 14 6.3598 5.4178 -4.3239 14 1 5.6939 4.2040 -4.8609 15 1 5.5791 6.6211 -4.7082 16 1 7.7319 5.5185 -4.8828 17 6 5.7642 2.5435 1.5196 18 6 7.2381 2.2346 1.5738 19 6 8.1197 3.1639 2.0944 20 6 9.4753 2.8845 2.1399 21 8 10.3421 3.7994 2.6529 22 6 9.7847 5.0272 3.1258 23 6 9.9505 1.6670 1.6615 24 8 11.2813 1.3907 1.7058 25 6 9.0662 0.7372 1.1402 26 6 7.7093 1.0211 1.0960 27 8 6.8404 0.1087 0.5845 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.5052 3.5022 0.8346 34 1 3.6690 3.4351 -0.9365 35 1 5.4980 4.9608 0.1332 36 1 7.0606 4.1183 0.0031 37 1 7.3683 7.0520 -2.2280 38 1 5.1986 1.6769 1.8620 39 1 5.5477 3.3962 2.1631 40 1 7.7508 4.1087 2.4657 41 1 9.0721 4.8193 3.9239 42 1 10.5820 5.6653 3.5073 43 1 9.2749 5.5342 2.3065 44 1 11.7666 1.6657 0.9159 45 1 9.4330 -0.2080 0.7681 46 1 6.6892 0.1997 -0.3662 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231639522.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:19 Heat of formation + Delta-G solvation = -172.430792 kcal Electronic energy + Delta-G solvation = -30704.460608 eV Core-core repulsion = 26367.780911 eV Total energy + Delta-G solvation = -4336.679697 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.33666 -39.96843 -38.21071 -37.33664 -36.72038 -35.77248 -34.69822 -32.67196 -31.73551 -30.66979 -28.98013 -28.12098 -27.53727 -26.16885 -24.17112 -23.10283 -22.08913 -21.82489 -20.94671 -19.87749 -18.59606 -17.44960 -17.31266 -16.70052 -16.63137 -16.33265 -16.25100 -15.90628 -15.57990 -14.90097 -14.81560 -14.40227 -14.33116 -14.00787 -13.92210 -13.58366 -13.40965 -13.08244 -12.81685 -12.74780 -12.41204 -12.01711 -11.92556 -11.85413 -11.73433 -11.49626 -11.43384 -11.23018 -11.06614 -10.78267 -10.73516 -10.51568 -10.39705 -10.30877 -10.08920 -9.97367 -9.78856 -9.33697 -8.57515 -8.42836 -7.58814 -7.48736 -6.13840 -4.15543 1.45089 1.63843 2.73212 2.94236 3.24073 3.32633 3.36882 3.47817 3.70647 4.33858 4.43282 4.78115 4.93708 4.95471 4.98929 5.08944 5.14286 5.20599 5.22501 5.29209 5.31075 5.39897 5.45985 5.66247 5.70042 5.72920 5.75682 5.83113 5.90850 5.92505 5.97741 6.05659 6.21359 6.34706 6.44285 6.76582 6.80079 6.90838 7.02507 7.14308 7.42106 7.66852 7.83438 7.93099 7.98861 8.25425 8.33653 8.37505 8.92057 9.49558 10.96445 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.007583 B = 0.004687 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3691.356931 B = 5973.030280 C = 8372.477686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 O -0.369 6.369 4 C 0.454 3.546 5 O -0.480 6.480 6 C 0.072 3.928 7 N -0.515 5.515 8 C 0.191 3.809 9 C -0.510 4.510 10 H 0.064 0.936 11 C 0.059 3.941 12 N -0.896 5.896 13 Si 0.895 3.105 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.098 3.902 18 C -0.057 4.057 19 C -0.164 4.164 20 C 0.090 3.910 21 O -0.311 6.311 22 C 0.025 3.975 23 C 0.082 3.918 24 O -0.489 6.489 25 C -0.142 4.142 26 C 0.119 3.881 27 O -0.482 6.482 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.127 0.873 35 H -0.004 1.004 36 H 0.043 0.957 37 H 0.261 0.739 38 H 0.080 0.920 39 H 0.031 0.969 40 H 0.133 0.867 41 H 0.052 0.948 42 H 0.096 0.904 43 H 0.062 0.938 44 H 0.384 0.616 45 H 0.136 0.864 46 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.501 -6.891 6.939 10.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.011 4.011 3 O -0.287 6.287 4 C 0.295 3.705 5 O -0.364 6.364 6 C -0.057 4.057 7 N -0.241 5.241 8 C 0.067 3.933 9 C -0.549 4.549 10 H 0.082 0.918 11 C -0.143 4.143 12 N -0.535 5.535 13 Si 0.723 3.277 14 H -0.196 1.196 15 H -0.211 1.211 16 H -0.210 1.210 17 C -0.030 4.030 18 C -0.058 4.058 19 C -0.183 4.183 20 C 0.044 3.956 21 O -0.225 6.225 22 C -0.070 4.070 23 C 0.037 3.963 24 O -0.298 6.298 25 C -0.161 4.161 26 C 0.073 3.927 27 O -0.292 6.292 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.144 0.856 35 H 0.013 0.987 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.050 0.950 40 H 0.151 0.849 41 H 0.070 0.930 42 H 0.115 0.885 43 H 0.081 0.919 44 H 0.239 0.761 45 H 0.154 0.846 46 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -3.002 -7.862 7.763 11.449 hybrid contribution -0.285 1.290 -1.508 2.005 sum -3.287 -6.571 6.255 9.649 Atomic orbital electron populations 1.21788 0.93201 1.02514 1.03343 1.22874 0.94847 0.81087 1.02285 1.86513 1.25703 1.31608 1.84890 1.24165 0.79860 0.93614 0.72863 1.90641 1.59824 1.42548 1.43388 1.21511 0.90167 0.88983 1.05023 1.61704 1.04279 1.39360 1.18740 1.19876 0.94774 0.82527 0.96084 1.21161 1.38573 1.03983 0.91174 0.91784 1.24948 0.95239 0.95584 0.98493 1.69944 1.39396 1.08657 1.35484 0.86483 0.77803 0.77999 0.85422 1.19632 1.21053 1.21007 1.20937 0.91621 0.99661 0.90763 1.19851 0.95819 0.92494 0.97657 1.20939 0.91349 1.00618 1.05392 1.19274 0.89035 0.89333 0.97924 1.86097 1.34483 1.26400 1.75517 1.23074 1.00357 0.84389 0.99230 1.17389 0.84011 0.91077 1.03865 1.84846 1.16582 1.83664 1.44709 1.21414 0.92540 1.00109 1.02068 1.17863 0.87503 0.88762 0.98589 1.84725 1.63075 1.52356 1.29080 0.90670 0.91704 0.91574 0.91510 0.91649 0.91971 0.85559 0.98661 0.93952 0.92912 0.90151 0.95044 0.84948 0.92982 0.88542 0.91925 0.76129 0.84624 0.74648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.29 37.16 0.38 -0.95 16 2 C 0.06 0.76 6.19 37.16 0.23 0.99 16 3 O -0.37 -5.51 10.22 -39.26 -0.40 -5.91 16 4 C 0.45 7.69 7.50 36.01 0.27 7.96 16 5 O -0.48 -8.93 14.25 -22.15 -0.32 -9.25 16 6 C 0.07 1.28 5.42 -4.98 -0.03 1.25 16 7 N -0.52 -10.20 3.97 -238.97 -0.95 -11.15 16 8 C 0.19 4.51 4.59 -4.98 -0.02 4.49 16 9 C -0.51 -13.26 8.35 -34.44 -0.29 -13.55 16 10 H 0.06 1.67 7.75 -52.49 -0.41 1.27 16 11 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 12 N -0.90 -24.97 13.29 55.43 0.74 -24.23 16 13 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 14 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 C 0.10 1.76 4.34 -4.98 -0.02 1.74 16 18 C -0.06 -1.04 4.50 -104.46 -0.47 -1.51 16 19 C -0.16 -2.86 7.63 -39.48 -0.30 -3.17 16 20 C 0.09 1.57 6.70 -39.14 -0.26 1.30 16 21 O -0.31 -5.11 10.28 -34.54 -0.36 -5.46 16 22 C 0.02 0.32 9.81 101.05 0.99 1.31 16 23 C 0.08 1.39 6.71 -39.14 -0.26 1.12 16 24 O -0.49 -7.38 13.29 -34.27 -0.46 -7.84 16 25 C -0.14 -2.36 9.92 -39.31 -0.39 -2.75 16 26 C 0.12 2.13 6.67 -39.25 -0.26 1.86 16 27 O -0.48 -8.55 12.00 -25.84 -0.31 -8.86 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 32 H 0.07 0.78 8.13 -51.93 -0.42 0.35 16 33 H 0.06 0.98 8.00 -51.93 -0.42 0.57 16 34 H 0.13 2.35 7.10 -51.93 -0.37 1.98 16 35 H 0.00 -0.11 8.05 -51.93 -0.42 -0.53 16 36 H 0.04 1.08 6.10 -51.93 -0.32 0.76 16 37 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 38 H 0.08 1.46 6.72 -51.93 -0.35 1.11 16 39 H 0.03 0.54 7.93 -51.93 -0.41 0.12 16 40 H 0.13 2.16 6.23 -52.48 -0.33 1.83 16 41 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 42 H 0.10 0.98 8.14 -51.92 -0.42 0.56 16 43 H 0.06 0.87 7.66 -51.93 -0.40 0.47 16 44 H 0.38 4.15 9.06 45.56 0.41 4.56 16 45 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 46 H 0.40 6.67 8.90 45.56 0.41 7.08 16 LS Contribution 388.62 15.07 5.86 5.86 Total: -1.00 -31.64 388.62 -6.83 -38.46 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -5.08 Total: 11.11 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -0.53 Total: 1.58 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: -0.21 Total: -35.38 kcal Atomic # 8 Polarization: -35.48 SS G_CDS: -1.84 Total: -37.32 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.64 -6.83 -38.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231639522.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.966 kcal (2) G-P(sol) polarization free energy of solvation -31.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds