Wall clock time and date at job start Sat Apr 11 2020 05:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45201 * 109.47296 * 2 1 4 4 C 1.34232 * 117.00404 * 180.02562 * 3 2 1 5 5 O 1.20823 * 119.99835 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99838 * 180.02562 * 4 3 2 7 7 N 1.46899 * 109.46800 * 174.25659 * 6 4 3 8 8 C 1.46900 * 110.99771 * 160.56225 * 7 6 4 9 9 C 1.50700 * 109.47145 * 287.58628 * 8 7 6 10 10 H 1.07997 * 120.00146 * 358.80353 * 9 8 7 11 11 C 1.37880 * 119.99788 * 178.80474 * 9 8 7 12 12 N 1.31511 * 120.00110 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99818 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47088 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46699 * 119.99877 * 13 11 9 16 16 H 1.48497 * 109.46964 * 240.00169 * 13 11 9 17 17 C 1.46899 * 111.00298 * 284.51886 * 7 6 4 18 18 C 1.50696 * 109.47241 * 169.99968 * 17 7 6 19 19 C 1.38269 * 119.95667 * 104.72312 * 18 17 7 20 20 C 1.38490 * 120.05647 * 180.28055 * 19 18 17 21 21 O 1.36075 * 120.01979 * 180.02562 * 20 19 18 22 22 C 1.42894 * 116.99978 * 359.95754 * 21 20 19 23 23 C 1.39178 * 119.96131 * 359.97438 * 20 19 18 24 24 O 1.35989 * 120.04333 * 180.02562 * 23 20 19 25 25 C 1.38496 * 119.90985 * 0.02562 * 23 20 19 26 26 C 1.38661 * 119.95589 * 285.00321 * 18 17 7 27 27 O 1.35979 * 119.98077 * 359.71425 * 26 18 17 28 28 H 1.09001 * 109.46646 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47202 * 299.99918 * 1 2 3 30 30 H 1.08994 * 109.46907 * 60.00234 * 1 2 3 31 31 H 1.08998 * 109.47202 * 240.00082 * 2 1 3 32 32 H 1.08999 * 109.47547 * 120.00034 * 2 1 3 33 33 H 1.08997 * 109.47233 * 54.25688 * 6 4 3 34 34 H 1.08994 * 109.46768 * 294.25549 * 6 4 3 35 35 H 1.08996 * 109.47107 * 47.58990 * 8 7 6 36 36 H 1.09000 * 109.46862 * 167.59100 * 8 7 6 37 37 H 0.96997 * 120.00071 * 179.97438 * 12 11 9 38 38 H 1.08999 * 109.46883 * 50.00220 * 17 7 6 39 39 H 1.08996 * 109.46647 * 290.00170 * 17 7 6 40 40 H 1.08004 * 119.97488 * 0.25489 * 19 18 17 41 41 H 1.08999 * 109.47615 * 59.99780 * 22 21 20 42 42 H 1.09010 * 109.47409 * 180.02562 * 22 21 20 43 43 H 1.09006 * 109.47015 * 299.99557 * 22 21 20 44 44 H 0.96697 * 114.00048 * 270.02327 * 24 23 20 45 45 H 1.07999 * 120.02552 * 179.97438 * 25 23 20 46 46 H 0.96698 * 113.99237 * 90.00618 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9375 0.0000 7 7 5.3813 2.8632 0.1379 8 6 6.0163 4.1101 -0.3093 9 6 5.9408 4.2017 -1.8116 10 1 5.4855 3.4035 -2.3790 11 6 6.4529 5.3046 -2.4616 12 7 7.0077 6.2763 -1.7707 13 14 6.3598 5.4178 -4.3239 14 1 5.6939 4.2040 -4.8609 15 1 5.5791 6.6211 -4.7082 16 1 7.7319 5.5185 -4.8828 17 6 5.7642 2.5435 1.5196 18 6 7.2381 2.2346 1.5738 19 6 8.1197 3.1639 2.0944 20 6 9.4753 2.8845 2.1399 21 8 10.3421 3.7994 2.6529 22 6 9.7847 5.0272 3.1258 23 6 9.9505 1.6670 1.6615 24 8 11.2813 1.3907 1.7058 25 6 9.0662 0.7372 1.1402 26 6 7.7093 1.0211 1.0960 27 8 6.8404 0.1087 0.5845 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.5052 3.5022 0.8346 34 1 3.6690 3.4351 -0.9365 35 1 5.4980 4.9608 0.1332 36 1 7.0606 4.1183 0.0031 37 1 7.3683 7.0520 -2.2280 38 1 5.1986 1.6769 1.8620 39 1 5.5477 3.3962 2.1631 40 1 7.7508 4.1087 2.4657 41 1 9.0721 4.8193 3.9239 42 1 10.5820 5.6653 3.5073 43 1 9.2749 5.5342 2.3065 44 1 11.7666 1.6657 0.9159 45 1 9.4330 -0.2080 0.7681 46 1 6.6892 0.1997 -0.3662 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231639522.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:18 Heat of formation + Delta-G solvation = -195.202378 kcal Electronic energy + Delta-G solvation = -30705.448058 eV Core-core repulsion = 26367.780911 eV Total energy + Delta-G solvation = -4337.667147 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.65443 -41.26163 -39.52952 -38.61799 -38.08485 -37.15224 -36.06426 -34.64278 -32.69104 -31.99821 -30.28508 -29.84582 -28.81235 -27.56566 -25.75998 -24.26702 -23.39516 -23.26654 -22.26828 -21.33650 -19.87889 -18.75672 -18.69242 -18.45148 -17.98549 -17.72775 -17.46057 -17.25366 -16.82445 -16.63228 -16.08500 -15.86864 -15.76391 -15.30355 -15.15160 -14.82913 -14.81191 -14.45479 -14.16636 -13.98006 -13.63552 -13.45817 -13.35551 -13.12736 -13.02306 -12.91090 -12.66286 -12.63239 -12.46271 -12.41320 -12.30702 -12.01841 -11.77049 -11.60996 -11.42073 -11.38948 -11.29125 -11.14170 -10.58302 -9.79389 -9.12686 -8.89050 -8.17399 -6.25269 0.12136 0.29338 1.37852 1.41084 1.44100 1.54846 1.71684 2.29971 2.37326 2.43630 3.15930 3.16872 3.33370 3.60209 3.77664 3.85025 3.94376 4.06997 4.10334 4.17828 4.23924 4.34903 4.37232 4.41940 4.50016 4.54015 4.58110 4.61531 4.69654 4.88321 4.89341 4.97341 5.01099 5.09360 5.17835 5.19632 5.25206 5.47754 5.56385 5.58985 5.69014 6.05332 6.18545 6.23171 6.49728 6.80739 6.88866 6.93332 7.01914 7.43680 8.92570 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.007583 B = 0.004687 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3691.356931 B = 5973.030280 C = 8372.477686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.055 3.945 3 O -0.369 6.369 4 C 0.462 3.538 5 O -0.499 6.499 6 C 0.070 3.930 7 N -0.519 5.519 8 C 0.211 3.789 9 C -0.518 4.518 10 H 0.059 0.941 11 C 0.012 3.988 12 N -0.926 5.926 13 Si 0.956 3.044 14 H -0.267 1.267 15 H -0.279 1.279 16 H -0.284 1.284 17 C 0.105 3.895 18 C -0.075 4.075 19 C -0.169 4.169 20 C 0.079 3.921 21 O -0.322 6.322 22 C 0.020 3.980 23 C 0.081 3.919 24 O -0.493 6.493 25 C -0.141 4.141 26 C 0.106 3.894 27 O -0.485 6.485 28 H 0.100 0.900 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.116 0.884 35 H -0.024 1.024 36 H 0.022 0.978 37 H 0.263 0.737 38 H 0.081 0.919 39 H 0.039 0.961 40 H 0.138 0.862 41 H 0.065 0.935 42 H 0.126 0.874 43 H 0.047 0.953 44 H 0.404 0.596 45 H 0.155 0.845 46 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.985 -7.537 6.784 10.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.018 4.018 3 O -0.287 6.287 4 C 0.304 3.696 5 O -0.385 6.385 6 C -0.059 4.059 7 N -0.244 5.244 8 C 0.086 3.914 9 C -0.556 4.556 10 H 0.077 0.923 11 C -0.187 4.187 12 N -0.567 5.567 13 Si 0.782 3.218 14 H -0.191 1.191 15 H -0.205 1.205 16 H -0.210 1.210 17 C -0.022 4.022 18 C -0.077 4.077 19 C -0.189 4.189 20 C 0.033 3.967 21 O -0.236 6.236 22 C -0.075 4.075 23 C 0.036 3.964 24 O -0.304 6.304 25 C -0.160 4.160 26 C 0.060 3.940 27 O -0.296 6.296 28 H 0.118 0.882 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.133 0.867 35 H -0.007 1.007 36 H 0.040 0.960 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.057 0.943 40 H 0.155 0.845 41 H 0.083 0.917 42 H 0.144 0.856 43 H 0.066 0.934 44 H 0.261 0.739 45 H 0.173 0.827 46 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -3.507 -8.515 7.606 11.944 hybrid contribution -0.135 1.464 -1.405 2.034 sum -3.642 -7.051 6.201 10.072 Atomic orbital electron populations 1.21810 0.90494 1.04246 1.03584 1.23209 0.96930 0.79423 1.02258 1.86497 1.24217 1.33626 1.84341 1.23832 0.80521 0.92823 0.72455 1.90634 1.60477 1.42980 1.44422 1.21481 0.89061 0.90072 1.05254 1.61559 1.05562 1.37175 1.20150 1.19463 0.93696 0.83402 0.94839 1.21412 1.38045 1.03712 0.92458 0.92276 1.25684 0.95016 0.95366 1.02585 1.70047 1.40339 1.09206 1.37093 0.85535 0.77674 0.78134 0.80493 1.19117 1.20479 1.20969 1.20879 0.91803 0.99793 0.89736 1.19966 0.95960 0.93089 0.98651 1.21022 0.91598 1.00724 1.05520 1.19463 0.89126 0.89974 0.98090 1.86079 1.34830 1.27206 1.75490 1.23302 1.01782 0.83372 0.99016 1.17504 0.84808 0.90877 1.03252 1.84788 1.15809 1.83692 1.46139 1.21574 0.91956 1.00805 1.01637 1.18021 0.88117 0.88825 0.99005 1.84713 1.63251 1.52341 1.29248 0.88168 0.91282 0.91492 0.91752 0.91547 0.90045 0.86651 1.00661 0.95972 0.92835 0.90121 0.94257 0.84472 0.91655 0.85616 0.93393 0.73868 0.82735 0.74514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 10.29 71.98 0.74 -1.48 16 2 C 0.06 1.25 6.19 71.98 0.45 1.69 16 3 O -0.37 -10.64 10.22 -51.43 -0.53 -11.16 16 4 C 0.46 15.42 7.50 71.24 0.53 15.96 16 5 O -0.50 -18.43 14.25 25.23 0.36 -18.07 16 6 C 0.07 2.47 5.42 85.56 0.46 2.94 16 7 N -0.52 -20.75 3.97 -909.98 -3.61 -24.37 16 8 C 0.21 10.16 4.59 85.56 0.39 10.55 16 9 C -0.52 -27.16 8.35 25.60 0.21 -26.95 16 10 H 0.06 3.10 7.75 -2.91 -0.02 3.08 16 11 C 0.01 0.66 5.46 84.66 0.46 1.12 16 12 N -0.93 -52.15 13.29 21.45 0.28 -51.87 16 13 Si 0.96 42.42 29.54 68.60 2.03 44.44 16 14 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 15 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 16 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 17 C 0.11 3.81 4.34 85.56 0.37 4.18 16 18 C -0.08 -2.77 4.50 -19.76 -0.09 -2.86 16 19 C -0.17 -5.97 7.63 22.34 0.17 -5.80 16 20 C 0.08 2.74 6.70 22.56 0.15 2.89 16 21 O -0.32 -10.35 10.28 -80.47 -0.83 -11.18 16 22 C 0.02 0.49 9.81 113.37 1.11 1.60 16 23 C 0.08 2.68 6.71 22.56 0.15 2.83 16 24 O -0.49 -14.16 13.29 -79.51 -1.06 -15.22 16 25 C -0.14 -4.56 9.92 22.44 0.22 -4.34 16 26 C 0.11 3.79 6.67 22.48 0.15 3.94 16 27 O -0.48 -17.14 12.00 -87.42 -1.05 -18.19 16 28 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 1.49 8.13 -2.39 -0.02 1.47 16 32 H 0.07 1.49 8.13 -2.39 -0.02 1.47 16 33 H 0.08 2.54 8.00 -2.39 -0.02 2.52 16 34 H 0.12 4.32 7.10 -2.39 -0.02 4.31 16 35 H -0.02 -1.25 8.05 -2.39 -0.02 -1.27 16 36 H 0.02 1.16 6.10 -2.39 -0.01 1.15 16 37 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 38 H 0.08 2.91 6.72 -2.39 -0.02 2.90 16 39 H 0.04 1.34 7.93 -2.39 -0.02 1.32 16 40 H 0.14 4.55 6.23 -2.91 -0.02 4.54 16 41 H 0.06 1.44 7.66 -2.39 -0.02 1.42 16 42 H 0.13 2.34 8.14 -2.38 -0.02 2.32 16 43 H 0.05 1.33 7.66 -2.38 -0.02 1.31 16 44 H 0.40 8.07 9.06 -74.06 -0.67 7.40 16 45 H 0.16 4.29 8.06 -2.91 -0.02 4.27 16 46 H 0.40 13.47 8.90 -74.06 -0.66 12.81 16 Total: -1.00 -66.78 388.62 0.79 -65.99 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: -0.30 Total: 33.35 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: 5.49 Total: 6.27 kcal Atomic # 7 Polarization: -72.90 SS G_CDS: -3.33 Total: -76.23 kcal Atomic # 8 Polarization: -70.72 SS G_CDS: -3.10 Total: -73.82 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Total: -66.78 0.79 -65.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231639522.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.214 kcal (2) G-P(sol) polarization free energy of solvation -66.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds