Wall clock time and date at job start Sat Apr 11 2020 05:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86797 * 120.00055 * 2 1 4 4 H 1.48497 * 109.47134 * 239.99729 * 3 2 1 5 5 H 1.48495 * 109.47064 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47232 * 119.99779 * 3 2 1 7 7 C 1.38960 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99593 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99777 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99732 * 179.97438 * 9 7 2 11 11 O 1.21300 * 120.00212 * 0.02562 * 10 9 7 12 12 C 1.50705 * 120.00281 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47191 * 180.02562 * 12 10 9 14 14 C 1.47843 * 110.99998 * 55.90057 * 13 12 10 15 15 C 1.54906 * 104.79822 * 146.35983 * 14 13 12 16 16 C 1.55391 * 101.74280 * 323.01880 * 15 14 13 17 17 C 1.47448 * 110.99986 * 176.73890 * 13 12 10 18 18 H 1.08998 * 109.88351 * 117.17447 * 17 13 12 19 19 C 1.52999 * 109.88696 * 356.15184 * 17 13 12 20 20 N 1.46499 * 109.47375 * 176.35171 * 19 17 13 21 21 C 1.34774 * 120.00329 * 174.97521 * 20 19 17 22 22 O 1.21739 * 119.99716 * 359.97438 * 21 20 19 23 23 C 1.46372 * 119.99944 * 180.02562 * 21 20 19 24 24 C 1.33969 * 119.23353 * 359.97438 * 23 21 20 25 25 O 1.35001 * 121.69029 * 180.02562 * 24 23 21 26 26 C 1.43252 * 116.76145 * 343.10186 * 25 24 23 27 27 C 1.53550 * 108.08805 * 45.48794 * 26 25 24 28 28 O 1.36217 * 119.22803 * 180.25703 * 23 21 20 29 29 H 0.97005 * 120.00345 * 0.02562 * 1 2 3 30 30 H 0.96999 * 120.00165 * 0.02562 * 9 7 2 31 31 H 1.09005 * 109.46632 * 59.99998 * 12 10 9 32 32 H 1.08992 * 109.46758 * 300.00370 * 12 10 9 33 33 H 1.09004 * 110.37174 * 265.18722 * 14 13 12 34 34 H 1.09004 * 110.37751 * 27.41928 * 14 13 12 35 35 H 1.09013 * 110.98882 * 81.01925 * 15 14 13 36 36 H 1.08996 * 110.99561 * 204.79572 * 15 14 13 37 37 H 1.09002 * 110.68293 * 277.17539 * 16 15 14 38 38 H 1.09005 * 110.84846 * 153.85986 * 16 15 14 39 39 H 1.09007 * 109.47087 * 56.34682 * 19 17 13 40 40 H 1.09005 * 109.46853 * 296.35332 * 19 17 13 41 41 H 0.97005 * 119.99363 * 354.97051 * 20 19 17 42 42 H 1.08003 * 119.15767 * 0.35576 * 24 23 21 43 43 H 1.09006 * 109.73640 * 165.13275 * 26 25 24 44 44 H 1.08998 * 109.74238 * 285.78828 * 26 25 24 45 45 H 1.08998 * 109.75156 * 61.47306 * 27 26 25 46 46 H 1.09000 * 109.75562 * 182.21827 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6963 -1.2124 5 1 1.2831 2.7464 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0010 12 6 1.2437 -4.8631 0.0000 13 7 2.1983 -5.9795 0.0007 14 6 3.1298 -5.8794 1.1443 15 6 3.4229 -7.3466 1.5456 16 6 2.0413 -8.0194 1.3153 17 6 1.4970 -7.2743 0.0785 18 1 1.6933 -7.8568 -0.8216 19 6 -0.0077 -7.0429 0.2306 20 7 -0.7036 -8.3319 0.2195 21 6 -2.0320 -8.3826 0.4417 22 8 -2.6534 -7.3572 0.6522 23 6 -2.7272 -9.6707 0.4311 24 6 -2.0281 -10.7895 0.1984 25 8 -2.6188 -12.0033 0.1768 26 6 -3.9197 -12.0981 0.7690 27 6 -4.7543 -10.9058 0.2797 28 8 -4.0708 -9.7031 0.6524 29 1 -0.4851 0.8401 -0.0004 30 1 0.3533 -2.3907 -0.0002 31 1 0.6174 -4.9205 -0.8904 32 1 0.6167 -4.9209 0.8896 33 1 4.0492 -5.3778 0.8421 34 1 2.6606 -5.3448 1.9704 35 1 4.1813 -7.7848 0.8966 36 1 3.7215 -7.4132 2.5917 37 1 1.3899 -7.8654 2.1756 38 1 2.1579 -9.0825 1.1043 39 1 -0.3663 -6.4291 -0.5958 40 1 -0.2032 -6.5325 1.1737 41 1 -0.2083 -9.1490 0.0520 42 1 -0.9638 -10.7193 0.0288 43 1 -4.3957 -13.0303 0.4645 44 1 -3.8330 -12.0668 1.8550 45 1 -4.8578 -10.9488 -0.8046 46 1 -5.7394 -10.9296 0.7457 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267260521.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:36 Heat of formation + Delta-G solvation = -101.866771 kcal Electronic energy + Delta-G solvation = -29607.367456 eV Core-core repulsion = 25306.040395 eV Total energy + Delta-G solvation = -4301.327060 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -41.50041 -40.13046 -39.09591 -37.61017 -37.31613 -34.88766 -33.89231 -32.67917 -32.03285 -31.11613 -30.24516 -28.76737 -26.69519 -25.90818 -24.96834 -24.22704 -22.24552 -21.16739 -20.42289 -19.79011 -19.23045 -18.73288 -18.42263 -17.71885 -16.89773 -16.75286 -15.96560 -15.65975 -15.44597 -15.28788 -15.18904 -14.86637 -14.62699 -14.58556 -14.40471 -14.29715 -13.80076 -13.69823 -13.54213 -12.96121 -12.79220 -12.58849 -12.33896 -11.95618 -11.74328 -11.49147 -11.47364 -11.16133 -11.13671 -11.01728 -10.93947 -10.83642 -10.59802 -10.40347 -10.18078 -10.14937 -9.45606 -9.32959 -8.61332 -8.38202 -7.95369 -7.86763 -6.37590 -3.78774 0.93479 2.24791 2.66992 2.99898 3.22568 3.28409 3.32425 3.36738 3.81457 3.92498 4.05247 4.25932 4.31675 4.37015 4.43644 4.48300 4.62062 4.68609 4.80347 4.83769 5.01535 5.11617 5.18133 5.24534 5.30263 5.38392 5.43764 5.65505 5.69711 5.75563 5.79369 5.89320 5.97629 6.03898 6.18690 6.28571 6.32143 6.34018 6.61836 6.83114 7.18997 7.24282 7.28007 7.58404 7.95795 8.09018 8.64888 9.21092 9.57742 10.09009 10.79895 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015806 B = 0.002344 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.075485 B =11940.370715 C =13508.668964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.442 3.558 11 O -0.582 6.582 12 C 0.030 3.970 13 N -0.494 5.494 14 C 0.054 3.946 15 C -0.133 4.133 16 C -0.141 4.141 17 C 0.061 3.939 18 H 0.092 0.908 19 C 0.101 3.899 20 N -0.718 5.718 21 C 0.571 3.429 22 O -0.514 6.514 23 C -0.063 4.063 24 C 0.001 3.999 25 O -0.301 6.301 26 C 0.014 3.986 27 C 0.018 3.982 28 O -0.285 6.285 29 H 0.272 0.728 30 H 0.393 0.607 31 H 0.093 0.907 32 H 0.054 0.946 33 H 0.103 0.897 34 H 0.042 0.958 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.397 0.603 42 H 0.178 0.822 43 H 0.122 0.878 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.487 -27.070 1.890 27.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.198 5.198 10 C 0.227 3.773 11 O -0.466 6.466 12 C -0.101 4.101 13 N -0.218 5.218 14 C -0.073 4.073 15 C -0.171 4.171 16 C -0.179 4.179 17 C -0.048 4.048 18 H 0.109 0.891 19 C -0.022 4.022 20 N -0.374 5.374 21 C 0.357 3.643 22 O -0.390 6.390 23 C -0.112 4.112 24 C -0.065 4.065 25 O -0.213 6.213 26 C -0.062 4.062 27 C -0.058 4.058 28 O -0.198 6.198 29 H 0.082 0.918 30 H 0.226 0.774 31 H 0.111 0.889 32 H 0.072 0.928 33 H 0.121 0.879 34 H 0.060 0.940 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.232 0.768 42 H 0.195 0.805 43 H 0.140 0.860 44 H 0.100 0.900 45 H 0.097 0.903 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.042 -26.104 1.580 26.841 hybrid contribution -0.745 0.328 0.635 1.032 sum -6.787 -25.776 2.215 26.747 Atomic orbital electron populations 1.69610 1.05930 1.28294 1.50260 1.25277 0.95625 0.99734 0.97321 0.85919 0.78748 0.80515 0.79028 1.19895 1.20996 1.19940 1.19638 0.93294 0.82191 1.47823 0.87955 1.41848 1.09258 1.04557 1.64129 1.19686 0.88357 0.84592 0.84653 1.90490 1.13629 1.86922 1.55576 1.22227 0.94742 0.91340 1.01820 1.63620 1.15561 0.99195 1.43461 1.23103 0.98478 0.94833 0.90843 1.22827 0.96533 0.96399 1.01322 1.22961 0.97631 0.99614 0.97700 1.22766 0.90270 0.92886 0.98907 0.89060 1.22266 0.91943 0.84431 1.03598 1.45737 1.07205 1.10737 1.73687 1.17105 0.81913 0.87310 0.77930 1.90912 1.65858 1.34954 1.47232 1.20421 0.85101 0.93735 1.11969 1.23101 0.97884 0.82941 1.02598 1.86102 1.31991 1.28081 1.75122 1.23747 0.82705 1.00707 0.99008 1.23695 0.96683 0.83776 1.01630 1.86440 1.16054 1.37460 1.79888 0.91780 0.77394 0.88934 0.92784 0.87873 0.93954 0.90760 0.91072 0.91238 0.90957 0.89990 0.90422 0.76753 0.80487 0.85975 0.89966 0.90306 0.85910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.07 13.05 55.50 0.72 -24.34 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.37 29.55 -169.99 -5.02 16.35 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.30 -8.45 9.68 -14.93 -0.14 -8.60 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 9 N -0.56 -14.51 5.29 -10.96 -0.06 -14.57 16 10 C 0.44 10.49 7.44 -10.98 -0.08 10.41 16 11 O -0.58 -15.44 13.62 5.54 0.08 -15.37 16 12 C 0.03 0.54 4.21 -4.98 -0.02 0.52 16 13 N -0.49 -7.96 5.10 -224.78 -1.15 -9.10 16 14 C 0.05 0.88 5.20 -2.30 -0.01 0.87 16 15 C -0.13 -1.52 7.08 -24.46 -0.17 -1.70 16 16 C -0.14 -1.37 6.17 -24.77 -0.15 -1.52 16 17 C 0.06 0.70 3.49 -66.72 -0.23 0.47 16 18 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 19 C 0.10 1.22 3.71 -4.04 -0.02 1.21 16 20 N -0.72 -7.09 5.27 -61.71 -0.33 -7.41 16 21 C 0.57 7.43 7.73 -12.99 -0.10 7.33 16 22 O -0.51 -9.24 16.91 -10.06 -0.17 -9.41 16 23 C -0.06 -0.68 6.61 -37.81 -0.25 -0.93 16 24 C 0.00 0.01 10.57 29.23 0.31 0.32 16 25 O -0.30 -2.21 10.47 -30.83 -0.32 -2.54 16 26 C 0.01 0.07 7.29 37.44 0.27 0.34 16 27 C 0.02 0.11 7.31 37.44 0.27 0.39 16 28 O -0.28 -3.29 10.28 -45.76 -0.47 -3.76 16 29 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 30 H 0.39 9.86 7.90 -40.82 -0.32 9.54 16 31 H 0.09 1.56 6.85 -51.93 -0.36 1.21 16 32 H 0.05 0.93 6.40 -51.93 -0.33 0.59 16 33 H 0.10 1.96 6.85 -51.93 -0.36 1.60 16 34 H 0.04 0.73 7.73 -51.93 -0.40 0.33 16 35 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.70 7.79 -51.93 -0.40 0.30 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 1.10 6.44 -51.93 -0.33 0.77 16 40 H 0.08 1.07 6.81 -51.93 -0.35 0.72 16 41 H 0.40 2.50 6.21 -40.82 -0.25 2.24 16 42 H 0.18 0.79 6.08 -52.48 -0.32 0.47 16 43 H 0.12 0.25 8.14 -51.93 -0.42 -0.18 16 44 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.12 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 372.52 15.07 5.61 5.61 Total: -1.00 -36.28 372.52 -7.85 -44.13 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -6.32 Total: 10.78 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: -0.42 Total: 9.62 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -0.81 Total: -55.42 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -0.89 Total: -31.07 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.28 -7.85 -44.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267260521.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.739 kcal (2) G-P(sol) polarization free energy of solvation -36.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds