Wall clock time and date at job start Sat Apr 11 2020 05:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86797 * 120.00055 * 2 1 4 4 H 1.48497 * 109.47134 * 239.99729 * 3 2 1 5 5 H 1.48495 * 109.47064 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47232 * 119.99779 * 3 2 1 7 7 C 1.38960 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99593 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99777 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99732 * 179.97438 * 9 7 2 11 11 O 1.21300 * 120.00212 * 0.02562 * 10 9 7 12 12 C 1.50705 * 120.00281 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47191 * 180.02562 * 12 10 9 14 14 C 1.47843 * 110.99998 * 55.90057 * 13 12 10 15 15 C 1.54906 * 104.79822 * 146.35983 * 14 13 12 16 16 C 1.55391 * 101.74280 * 323.01880 * 15 14 13 17 17 C 1.47448 * 110.99986 * 176.73890 * 13 12 10 18 18 H 1.08998 * 109.88351 * 117.17447 * 17 13 12 19 19 C 1.52999 * 109.88696 * 356.15184 * 17 13 12 20 20 N 1.46499 * 109.47375 * 176.35171 * 19 17 13 21 21 C 1.34774 * 120.00329 * 174.97521 * 20 19 17 22 22 O 1.21739 * 119.99716 * 359.97438 * 21 20 19 23 23 C 1.46372 * 119.99944 * 180.02562 * 21 20 19 24 24 C 1.33969 * 119.23353 * 359.97438 * 23 21 20 25 25 O 1.35001 * 121.69029 * 180.02562 * 24 23 21 26 26 C 1.43252 * 116.76145 * 343.10186 * 25 24 23 27 27 C 1.53550 * 108.08805 * 45.48794 * 26 25 24 28 28 O 1.36217 * 119.22803 * 180.25703 * 23 21 20 29 29 H 0.97005 * 120.00345 * 0.02562 * 1 2 3 30 30 H 0.96999 * 120.00165 * 0.02562 * 9 7 2 31 31 H 1.09005 * 109.46632 * 59.99998 * 12 10 9 32 32 H 1.08992 * 109.46758 * 300.00370 * 12 10 9 33 33 H 1.09004 * 110.37174 * 265.18722 * 14 13 12 34 34 H 1.09004 * 110.37751 * 27.41928 * 14 13 12 35 35 H 1.09013 * 110.98882 * 81.01925 * 15 14 13 36 36 H 1.08996 * 110.99561 * 204.79572 * 15 14 13 37 37 H 1.09002 * 110.68293 * 277.17539 * 16 15 14 38 38 H 1.09005 * 110.84846 * 153.85986 * 16 15 14 39 39 H 1.09007 * 109.47087 * 56.34682 * 19 17 13 40 40 H 1.09005 * 109.46853 * 296.35332 * 19 17 13 41 41 H 0.97005 * 119.99363 * 354.97051 * 20 19 17 42 42 H 1.08003 * 119.15767 * 0.35576 * 24 23 21 43 43 H 1.09006 * 109.73640 * 165.13275 * 26 25 24 44 44 H 1.08998 * 109.74238 * 285.78828 * 26 25 24 45 45 H 1.08998 * 109.75156 * 61.47306 * 27 26 25 46 46 H 1.09000 * 109.75562 * 182.21827 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6963 -1.2124 5 1 1.2831 2.7464 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0010 12 6 1.2437 -4.8631 0.0000 13 7 2.1983 -5.9795 0.0007 14 6 3.1298 -5.8794 1.1443 15 6 3.4229 -7.3466 1.5456 16 6 2.0413 -8.0194 1.3153 17 6 1.4970 -7.2743 0.0785 18 1 1.6933 -7.8568 -0.8216 19 6 -0.0077 -7.0429 0.2306 20 7 -0.7036 -8.3319 0.2195 21 6 -2.0320 -8.3826 0.4417 22 8 -2.6534 -7.3572 0.6522 23 6 -2.7272 -9.6707 0.4311 24 6 -2.0281 -10.7895 0.1984 25 8 -2.6188 -12.0033 0.1768 26 6 -3.9197 -12.0981 0.7690 27 6 -4.7543 -10.9058 0.2797 28 8 -4.0708 -9.7031 0.6524 29 1 -0.4851 0.8401 -0.0004 30 1 0.3533 -2.3907 -0.0002 31 1 0.6174 -4.9205 -0.8904 32 1 0.6167 -4.9209 0.8896 33 1 4.0492 -5.3778 0.8421 34 1 2.6606 -5.3448 1.9704 35 1 4.1813 -7.7848 0.8966 36 1 3.7215 -7.4132 2.5917 37 1 1.3899 -7.8654 2.1756 38 1 2.1579 -9.0825 1.1043 39 1 -0.3663 -6.4291 -0.5958 40 1 -0.2032 -6.5325 1.1737 41 1 -0.2083 -9.1490 0.0520 42 1 -0.9638 -10.7193 0.0288 43 1 -4.3957 -13.0303 0.4645 44 1 -3.8330 -12.0668 1.8550 45 1 -4.8578 -10.9488 -0.8046 46 1 -5.7394 -10.9296 0.7457 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267260521.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:32 Heat of formation + Delta-G solvation = -132.166647 kcal Electronic energy + Delta-G solvation = -29608.681357 eV Core-core repulsion = 25306.040395 eV Total energy + Delta-G solvation = -4302.640962 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 4.46 seconds Orbital eigenvalues (eV) -42.15364 -41.26206 -40.29085 -39.23178 -38.00095 -36.09981 -35.77291 -33.56819 -33.27567 -32.96998 -31.07419 -29.51899 -28.32482 -26.58068 -26.09891 -25.83664 -23.08326 -22.28176 -21.59584 -20.81007 -20.45398 -19.91103 -19.35308 -19.17861 -18.14377 -17.46251 -17.14447 -16.86958 -16.60243 -16.37675 -16.24079 -15.96063 -15.88227 -15.69486 -15.60845 -15.30710 -15.21777 -14.76557 -14.39921 -14.34918 -14.10069 -13.66979 -13.49537 -13.30345 -13.16373 -12.98224 -12.81765 -12.44864 -12.31275 -12.14074 -12.02111 -11.95248 -11.91581 -11.70565 -11.57018 -11.47613 -11.08531 -10.37242 -10.21101 -10.03009 -9.26655 -9.25228 -8.47236 -5.96834 0.22083 1.38622 1.39873 1.50575 1.51784 2.01427 2.05626 2.22841 2.27343 2.64244 2.86713 3.18596 3.31441 3.38850 3.51779 3.68961 3.75409 3.84108 3.96289 3.98382 4.13877 4.23478 4.26611 4.30452 4.39653 4.42802 4.45383 4.55349 4.61391 4.63604 4.75821 4.85101 4.96268 5.05247 5.08222 5.20933 5.29046 5.38699 5.39367 5.75528 5.83143 5.99265 6.11647 6.17469 6.51296 6.57877 7.08935 7.10574 7.53331 8.08194 8.70125 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015806 B = 0.002344 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.075485 B =11940.370715 C =13508.668964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.016 4.016 3 Si 0.996 3.004 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.332 4.332 8 H 0.082 0.918 9 N -0.575 5.575 10 C 0.439 3.561 11 O -0.612 6.612 12 C 0.046 3.954 13 N -0.509 5.509 14 C 0.051 3.949 15 C -0.121 4.121 16 C -0.130 4.130 17 C 0.066 3.934 18 H 0.118 0.882 19 C 0.108 3.892 20 N -0.695 5.695 21 C 0.569 3.431 22 O -0.580 6.580 23 C -0.105 4.105 24 C 0.045 3.955 25 O -0.304 6.304 26 C 0.013 3.987 27 C 0.010 3.990 28 O -0.326 6.326 29 H 0.277 0.723 30 H 0.394 0.606 31 H 0.106 0.894 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.019 0.981 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.116 0.884 39 H 0.065 0.935 40 H 0.056 0.944 41 H 0.418 0.582 42 H 0.213 0.787 43 H 0.157 0.843 44 H 0.087 0.913 45 H 0.080 0.920 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.236 -30.446 1.722 31.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.216 4.216 3 Si 0.819 3.181 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.462 4.462 8 H 0.100 0.900 9 N -0.212 5.212 10 C 0.226 3.774 11 O -0.498 6.498 12 C -0.085 4.085 13 N -0.234 5.234 14 C -0.077 4.077 15 C -0.159 4.159 16 C -0.169 4.169 17 C -0.042 4.042 18 H 0.136 0.864 19 C -0.017 4.017 20 N -0.351 5.351 21 C 0.358 3.642 22 O -0.460 6.460 23 C -0.153 4.153 24 C -0.022 4.022 25 O -0.216 6.216 26 C -0.062 4.062 27 C -0.065 4.065 28 O -0.241 6.241 29 H 0.087 0.913 30 H 0.227 0.773 31 H 0.124 0.876 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.038 0.962 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.134 0.866 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.258 0.742 42 H 0.229 0.771 43 H 0.174 0.826 44 H 0.105 0.895 45 H 0.099 0.901 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.774 -29.565 1.401 30.156 hybrid contribution -0.829 1.205 0.664 1.606 sum -6.604 -28.360 2.065 29.192 Atomic orbital electron populations 1.69691 1.07018 1.29396 1.50286 1.26121 0.96543 1.02655 0.96273 0.84947 0.77694 0.76385 0.79054 1.19504 1.19593 1.19542 1.19648 0.92735 0.83846 1.49956 0.89999 1.41956 1.09246 1.04863 1.65119 1.20695 0.88345 0.85892 0.82433 1.90470 1.15276 1.87732 1.56281 1.22041 0.94451 0.89206 1.02835 1.63577 1.15805 1.00289 1.43726 1.22986 0.96731 0.97913 0.90063 1.22770 0.98044 0.92735 1.02358 1.22983 0.95889 1.01588 0.96395 1.22890 0.89164 0.90887 1.01305 0.86442 1.22008 0.92513 0.85266 1.01869 1.45424 1.06387 1.10800 1.72512 1.17580 0.82387 0.87591 0.76640 1.90872 1.67309 1.37250 1.50618 1.20150 0.85389 0.93385 1.16375 1.23591 0.98845 0.82051 0.97744 1.86114 1.33106 1.27624 1.74727 1.24030 0.81420 1.01487 0.99262 1.24001 0.97543 0.82831 1.02088 1.86360 1.16761 1.40151 1.80825 0.91312 0.77287 0.87576 0.91953 0.91614 0.96222 0.89537 0.89678 0.91471 0.86551 0.91648 0.92526 0.74239 0.77132 0.82578 0.89457 0.90139 0.83925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.24 13.05 21.67 0.28 -51.95 16 2 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 3 Si 1.00 44.29 29.55 68.60 2.03 46.32 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 5 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.33 -19.49 9.68 84.04 0.81 -18.68 16 8 H 0.08 5.04 7.16 -2.91 -0.02 5.02 16 9 N -0.57 -31.08 5.29 -306.97 -1.62 -32.70 16 10 C 0.44 21.81 7.44 87.66 0.65 22.46 16 11 O -0.61 -34.07 13.62 -3.09 -0.04 -34.11 16 12 C 0.05 1.71 4.21 85.56 0.36 2.07 16 13 N -0.51 -16.26 5.10 -865.07 -4.41 -20.67 16 14 C 0.05 1.66 5.20 86.77 0.45 2.11 16 15 C -0.12 -2.49 7.08 32.07 0.23 -2.27 16 16 C -0.13 -2.05 6.17 31.86 0.20 -1.86 16 17 C 0.07 1.37 3.49 45.26 0.16 1.52 16 18 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 19 C 0.11 2.52 3.71 86.38 0.32 2.84 16 20 N -0.70 -12.38 5.27 -467.35 -2.46 -14.85 16 21 C 0.57 14.69 7.73 86.36 0.67 15.36 16 22 O -0.58 -21.90 16.91 10.08 0.17 -21.73 16 23 C -0.10 -2.13 6.61 23.42 0.15 -1.97 16 24 C 0.04 0.53 10.57 66.85 0.71 1.24 16 25 O -0.30 -3.32 10.47 -69.24 -0.73 -4.04 16 26 C 0.01 0.09 7.29 72.17 0.53 0.61 16 27 C 0.01 0.11 7.31 72.17 0.53 0.64 16 28 O -0.33 -7.50 10.28 -71.80 -0.74 -8.24 16 29 H 0.28 14.73 8.31 -92.70 -0.77 13.96 16 30 H 0.39 20.72 7.90 -92.71 -0.73 19.99 16 31 H 0.11 3.66 6.85 -2.38 -0.02 3.64 16 32 H 0.06 2.23 6.40 -2.39 -0.02 2.21 16 33 H 0.07 2.62 6.85 -2.38 -0.02 2.60 16 34 H 0.02 0.71 7.73 -2.38 -0.02 0.69 16 35 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.07 1.15 7.79 -2.39 -0.02 1.13 16 38 H 0.12 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.07 1.77 6.44 -2.38 -0.02 1.75 16 40 H 0.06 1.59 6.81 -2.38 -0.02 1.57 16 41 H 0.42 3.56 6.21 -92.70 -0.58 2.98 16 42 H 0.21 0.78 6.08 -2.91 -0.02 0.76 16 43 H 0.16 -0.02 8.14 -2.38 -0.02 -0.04 16 44 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -85.26 372.52 -1.56 -86.82 By element: Atomic # 1 Polarization: 31.79 SS G_CDS: -0.27 Total: 31.53 kcal Atomic # 6 Polarization: 17.40 SS G_CDS: 6.23 Total: 23.63 kcal Atomic # 7 Polarization: -111.96 SS G_CDS: -8.22 Total: -120.17 kcal Atomic # 8 Polarization: -66.79 SS G_CDS: -1.33 Total: -68.12 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -85.26 -1.56 -86.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267260521.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.348 kcal (2) G-P(sol) polarization free energy of solvation -85.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.46 seconds