Wall clock time and date at job start Sat Apr 11 2020 05:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35498 * 126.97663 * 2 1 4 4 N 1.30523 * 107.30617 * 179.97438 * 3 2 1 5 5 N 1.28592 * 109.67062 * 0.02562 * 4 3 2 6 6 C 1.30524 * 109.67571 * 359.97438 * 5 4 3 7 7 C 1.50701 * 126.34284 * 180.02562 * 6 5 4 8 8 N 1.46909 * 109.46825 * 89.98320 * 7 6 5 9 9 C 1.48533 * 111.00040 * 52.59725 * 8 7 6 10 10 C 1.54932 * 103.22331 * 159.72446 * 9 8 7 11 11 C 1.54602 * 102.92185 * 322.58410 * 10 9 8 12 12 H 1.09000 * 110.30779 * 263.04036 * 11 10 9 13 13 C 1.53005 * 110.30931 * 140.87472 * 11 10 9 14 14 N 1.46503 * 109.47145 * 69.28400 * 13 11 10 15 15 C 1.34766 * 120.00150 * 180.02562 * 14 13 11 16 16 O 1.21287 * 120.00448 * 359.97438 * 15 14 13 17 17 C 1.50701 * 120.00351 * 180.02562 * 15 14 13 18 18 S 1.80999 * 109.47526 * 180.02562 * 17 15 14 19 19 C 1.76200 * 100.00173 * 179.97438 * 18 17 15 20 20 H 1.07998 * 119.99876 * 359.97438 * 19 18 17 21 21 C 1.38799 * 120.00087 * 179.97438 * 19 18 17 22 22 N 1.31628 * 119.99849 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99996 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47083 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47033 * 119.99611 * 23 21 19 26 26 H 1.48494 * 109.47221 * 239.99674 * 23 21 19 27 27 C 1.47902 * 110.99926 * 169.99830 * 8 7 6 28 28 H 1.09007 * 109.46889 * 270.01711 * 1 2 3 29 29 H 1.08993 * 109.47712 * 30.01909 * 1 2 3 30 30 H 1.09003 * 109.47183 * 150.02625 * 1 2 3 31 31 H 1.07999 * 126.34771 * 359.96512 * 3 2 1 32 32 H 1.09000 * 109.46644 * 209.97567 * 7 6 5 33 33 H 1.08992 * 109.47499 * 329.97632 * 7 6 5 34 34 H 1.08996 * 110.66563 * 278.15446 * 9 8 7 35 35 H 1.08993 * 110.66602 * 41.28769 * 9 8 7 36 36 H 1.09000 * 110.72526 * 204.23035 * 10 9 8 37 37 H 1.09001 * 110.72739 * 80.94157 * 10 9 8 38 38 H 1.08997 * 109.47492 * 189.28347 * 13 11 10 39 39 H 1.08999 * 109.46972 * 309.29125 * 13 11 10 40 40 H 0.97003 * 120.00107 * 0.02562 * 14 13 11 41 41 H 1.09002 * 109.46927 * 299.99785 * 17 15 14 42 42 H 1.08997 * 109.47254 * 59.99638 * 17 15 14 43 43 H 0.96998 * 119.99956 * 180.02562 * 22 21 19 44 44 H 1.08997 * 109.91358 * 333.50277 * 27 8 7 45 45 H 1.09001 * 109.91790 * 94.79887 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0825 0.0000 4 7 3.5091 0.6431 0.0006 5 7 3.5091 -0.6428 0.0004 6 6 2.2800 -1.0823 0.0002 7 6 1.8478 -2.5260 0.0005 8 7 1.7075 -2.9948 1.3857 9 6 0.8292 -2.0879 2.1682 10 6 0.3796 -2.9707 3.3594 11 6 0.2008 -4.3624 2.7102 12 1 -0.8461 -4.5303 2.4577 13 6 0.7028 -5.4570 3.6541 14 7 -0.1963 -5.5583 4.8064 15 6 0.0498 -6.4617 5.7757 16 8 1.0153 -7.1912 5.6940 17 6 -0.8753 -6.5663 6.9607 18 16 -0.2807 -7.8601 8.0781 19 6 -1.5111 -7.7675 9.3359 20 1 -2.3152 -7.0513 9.2530 21 6 -1.4470 -8.6150 10.4332 22 7 -0.4667 -9.4876 10.5345 23 14 -2.7519 -8.5173 11.7663 24 1 -3.7373 -7.4624 11.4180 25 1 -3.4461 -9.8254 11.8763 26 1 -2.1101 -8.1868 13.0640 27 6 1.0594 -4.3234 1.4325 28 1 -0.3633 0.0003 1.0277 29 1 -0.3634 0.8897 -0.5141 30 1 -0.3634 -0.8902 -0.5134 31 1 1.9701 2.1170 -0.0005 32 1 0.8909 -2.6188 -0.5131 33 1 2.5960 -3.1294 -0.5133 34 1 1.3880 -1.2212 2.5211 35 1 -0.0300 -1.7771 1.5738 36 1 -0.5645 -2.6126 3.7701 37 1 1.1501 -3.0005 4.1298 38 1 0.7251 -6.4102 3.1258 39 1 1.7069 -5.2083 3.9975 40 1 -0.9687 -4.9752 4.8716 41 1 -0.8984 -5.6131 7.4889 42 1 -1.8792 -6.8157 6.6171 43 1 -0.4221 -10.0801 11.3011 44 1 0.4264 -4.4588 0.5556 45 1 1.8178 -5.1054 1.4707 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267290388.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:40 Heat of formation + Delta-G solvation = 25.426729 kcal Electronic energy + Delta-G solvation = -26048.479474 eV Core-core repulsion = 22227.717896 eV Total energy + Delta-G solvation = -3820.761578 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -44.13121 -40.85767 -39.93096 -36.47982 -35.81446 -34.58148 -33.93515 -31.77935 -30.87950 -30.07269 -28.55524 -27.72386 -27.24109 -25.36837 -23.41362 -22.93190 -21.80181 -21.23413 -21.15654 -19.79528 -18.25221 -17.83393 -17.62463 -17.53796 -16.87847 -16.75388 -16.47095 -16.31805 -16.08979 -15.71066 -15.26475 -15.05601 -14.79305 -14.65279 -14.43281 -14.25151 -13.83472 -13.56864 -13.52278 -13.15401 -13.11538 -12.93072 -12.89965 -12.69315 -12.57686 -12.46022 -12.18327 -11.95177 -11.70859 -11.60593 -11.32215 -11.15573 -11.09441 -10.94300 -10.37194 -10.25701 -10.09454 -9.40380 -8.66279 -8.34263 -6.12376 0.80335 1.28025 1.41947 1.48298 1.57800 1.59176 1.63736 1.85205 2.26535 2.31548 2.99134 3.00032 3.19362 3.32878 3.52655 3.65622 3.71761 3.82764 3.84505 3.96842 4.03716 4.19817 4.28116 4.31184 4.37826 4.39909 4.45783 4.51984 4.56906 4.64634 4.70776 4.74702 4.83463 4.88042 4.92295 4.98468 5.11995 5.15867 5.22783 5.42598 5.46406 5.82082 5.87769 5.98235 6.20549 6.53758 7.07112 7.27926 7.74550 8.75236 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.029396 B = 0.001662 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.274451 B =16847.949830 C =17183.142474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.469 5.469 3 C 0.163 3.837 4 N -0.355 5.355 5 N -0.334 5.334 6 C 0.179 3.821 7 C 0.137 3.863 8 N -0.533 5.533 9 C 0.037 3.963 10 C -0.120 4.120 11 C -0.094 4.094 12 H 0.114 0.886 13 C 0.131 3.869 14 N -0.709 5.709 15 C 0.531 3.469 16 O -0.569 6.569 17 C -0.128 4.128 18 S -0.157 6.157 19 C -0.544 4.544 20 H 0.084 0.916 21 C 0.011 3.989 22 N -0.912 5.912 23 Si 1.000 3.000 24 H -0.255 1.255 25 H -0.274 1.274 26 H -0.275 1.275 27 C 0.047 3.953 28 H 0.097 0.903 29 H 0.121 0.879 30 H 0.104 0.896 31 H 0.259 0.741 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.054 0.946 38 H 0.061 0.939 39 H 0.047 0.953 40 H 0.417 0.583 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.271 0.729 44 H 0.082 0.918 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.595 23.211 -26.321 36.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.160 5.160 3 C -0.126 4.126 4 N -0.194 5.194 5 N -0.175 5.175 6 C -0.091 4.091 7 C 0.008 3.992 8 N -0.259 5.259 9 C -0.090 4.090 10 C -0.158 4.158 11 C -0.113 4.113 12 H 0.132 0.868 13 C 0.007 3.993 14 N -0.363 5.363 15 C 0.317 3.683 16 O -0.448 6.448 17 C -0.280 4.280 18 S 0.071 5.929 19 C -0.692 4.692 20 H 0.102 0.898 21 C -0.193 4.193 22 N -0.549 5.549 23 Si 0.822 3.178 24 H -0.179 1.179 25 H -0.200 1.200 26 H -0.201 1.201 27 C -0.081 4.081 28 H 0.115 0.885 29 H 0.140 0.860 30 H 0.123 0.877 31 H 0.275 0.725 32 H 0.108 0.892 33 H 0.123 0.877 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.117 0.883 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.254 0.746 41 H 0.127 0.873 42 H 0.131 0.869 43 H 0.080 0.920 44 H 0.100 0.900 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.898 21.878 -26.199 34.483 hybrid contribution -3.384 0.898 0.831 3.599 sum -8.282 22.776 -25.369 35.085 Atomic orbital electron populations 1.22673 0.72594 1.07463 1.05730 1.46437 1.10652 1.05590 1.53329 1.27216 0.86299 0.96611 1.02458 1.74183 1.20994 1.03503 1.20683 1.74186 1.19645 1.03804 1.19837 1.24881 0.87082 0.93141 1.03949 1.20663 1.02596 0.84856 0.91100 1.64803 1.47313 1.03183 1.10583 1.23353 0.95096 0.95557 0.94983 1.22611 1.02346 0.93691 0.97117 1.22183 1.01404 0.93700 0.93998 0.86803 1.21454 0.92870 0.99147 0.85808 1.45684 1.30738 1.38232 1.21650 1.20091 0.84891 0.79775 0.83534 1.90704 1.31148 1.44350 1.78571 1.23367 1.02574 1.04498 0.97518 1.85644 1.39345 1.46005 1.21948 1.23242 1.13058 1.24707 1.08220 0.89758 1.26152 0.98827 0.93879 1.00457 1.70196 1.32722 1.21120 1.30821 0.84888 0.77468 0.78643 0.76836 1.17851 1.19952 1.20075 1.22870 0.97089 0.90821 0.97310 0.88476 0.86048 0.87710 0.72526 0.89239 0.87689 0.92735 0.90485 0.88264 0.92734 0.92029 0.93437 0.74604 0.87251 0.86947 0.92031 0.90000 0.90406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.11 9.33 127.77 1.19 1.08 16 2 N -0.47 -4.20 3.00 -542.07 -1.63 -5.82 16 3 C 0.16 1.98 12.74 180.11 2.30 4.28 16 4 N -0.35 -8.42 12.21 -59.99 -0.73 -9.15 16 5 N -0.33 -8.59 12.21 -50.16 -0.61 -9.20 16 6 C 0.18 2.88 6.38 137.98 0.88 3.76 16 7 C 0.14 1.51 5.39 85.56 0.46 1.97 16 8 N -0.53 -7.15 5.39 -887.59 -4.78 -11.93 16 9 C 0.04 0.38 4.91 86.65 0.43 0.80 16 10 C -0.12 -1.31 6.41 31.80 0.20 -1.11 16 11 C -0.09 -0.99 3.03 -9.91 -0.03 -1.02 16 12 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 13 C 0.13 2.66 4.76 86.38 0.41 3.07 16 14 N -0.71 -16.23 5.43 -463.06 -2.51 -18.74 16 15 C 0.53 19.13 7.85 87.66 0.69 19.81 16 16 O -0.57 -26.56 15.86 -3.05 -0.05 -26.61 16 17 C -0.13 -4.94 6.16 71.24 0.44 -4.50 16 18 S -0.16 -8.68 20.57 -56.49 -1.16 -9.85 16 19 C -0.54 -30.87 9.50 67.95 0.65 -30.23 16 20 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 21 C 0.01 0.65 5.49 84.86 0.47 1.12 16 22 N -0.91 -56.13 13.22 21.65 0.29 -55.84 16 23 Si 1.00 43.28 29.55 68.60 2.03 45.30 16 24 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 25 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 26 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 27 C 0.05 0.48 6.36 86.44 0.55 1.03 16 28 H 0.10 -0.32 6.86 -2.38 -0.02 -0.34 16 29 H 0.12 -0.81 8.14 -2.39 -0.02 -0.83 16 30 H 0.10 -0.47 7.19 -2.39 -0.02 -0.49 16 31 H 0.26 0.45 8.06 -2.91 -0.02 0.43 16 32 H 0.09 0.32 6.88 -2.39 -0.02 0.30 16 33 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.05 0.83 7.90 -2.39 -0.02 0.81 16 35 H 0.08 0.27 5.36 -2.39 -0.01 0.26 16 36 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.05 0.95 7.76 -2.39 -0.02 0.93 16 38 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.05 1.23 7.99 -2.39 -0.02 1.21 16 40 H 0.42 6.24 8.41 -92.71 -0.78 5.46 16 41 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 42 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 43 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 44 H 0.08 0.40 7.57 -2.39 -0.02 0.38 16 45 H 0.08 1.06 7.68 -2.39 -0.02 1.04 16 Total: -1.00 -93.08 381.85 -0.31 -93.39 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 0.23 Total: 8.40 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: 8.63 Total: 0.06 kcal Atomic # 7 Polarization: -100.71 SS G_CDS: -9.98 Total: -110.69 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.05 Total: -26.61 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.16 Total: -9.85 kcal Total: -93.08 -0.31 -93.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267290388.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.813 kcal (2) G-P(sol) polarization free energy of solvation -93.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds