Wall clock time and date at job start Sat Apr 11 2020 05:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28721 * 125.86521 * 2 1 4 4 N 1.28629 * 110.17374 * 180.23977 * 3 2 1 5 5 C 1.33773 * 108.88988 * 359.75024 * 4 3 2 6 6 C 1.35311 * 125.86876 * 179.82367 * 2 1 3 7 7 C 1.50695 * 126.91301 * 0.03553 * 6 2 1 8 8 N 1.46905 * 109.47078 * 274.71237 * 7 6 2 9 9 C 1.46852 * 110.99794 * 293.95239 * 8 7 6 10 10 C 1.53042 * 109.52121 * 174.16150 * 9 8 7 11 11 C 1.53114 * 109.27750 * 59.18064 * 10 9 8 12 12 C 1.53117 * 109.16170 * 302.34288 * 11 10 9 13 13 H 1.08992 * 109.50626 * 297.67587 * 12 11 10 14 14 N 1.46504 * 109.50491 * 177.59454 * 12 11 10 15 15 C 1.34779 * 119.99957 * 84.99952 * 14 12 11 16 16 O 1.21281 * 119.99517 * 0.02562 * 15 14 12 17 17 C 1.50693 * 120.00222 * 179.97438 * 15 14 12 18 18 S 1.81002 * 109.47406 * 180.02562 * 17 15 14 19 19 C 1.76199 * 100.00182 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99976 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99949 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99820 * 0.27912 * 21 19 18 23 23 Si 1.86800 * 119.99759 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46758 * 90.00172 * 23 21 19 25 25 H 1.48499 * 109.47026 * 210.00020 * 23 21 19 26 26 H 1.48496 * 109.47474 * 330.00056 * 23 21 19 27 27 C 1.46846 * 110.99902 * 169.74667 * 8 7 6 28 28 H 1.08991 * 109.47468 * 270.17454 * 1 2 3 29 29 H 1.09000 * 109.47380 * 30.18327 * 1 2 3 30 30 H 1.09007 * 109.46916 * 150.17393 * 1 2 3 31 31 H 1.07998 * 126.75033 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.47043 * 154.71107 * 7 6 2 33 33 H 1.09000 * 109.47146 * 34.70965 * 7 6 2 34 34 H 1.09000 * 109.46315 * 54.14574 * 9 8 7 35 35 H 1.08999 * 109.46197 * 294.17938 * 9 8 7 36 36 H 1.09000 * 109.50068 * 299.23711 * 10 9 8 37 37 H 1.08996 * 109.53240 * 179.14135 * 10 9 8 38 38 H 1.08998 * 109.52274 * 182.43772 * 11 10 9 39 39 H 1.09000 * 109.52193 * 62.25073 * 11 10 9 40 40 H 0.96999 * 120.00526 * 265.00217 * 14 12 11 41 41 H 1.09005 * 109.46836 * 60.00415 * 17 15 14 42 42 H 1.08996 * 109.47837 * 300.00838 * 17 15 14 43 43 H 0.97001 * 120.00425 * 359.71679 * 22 21 19 44 44 H 1.08995 * 109.46522 * 65.82261 * 27 8 7 45 45 H 1.08996 * 109.46068 * 305.84964 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2192 1.0431 0.0000 4 7 3.4575 0.6953 -0.0051 5 6 3.5322 -0.6404 -0.0031 6 6 2.2578 -1.0965 0.0034 7 6 1.8118 -2.5359 0.0071 8 7 1.5574 -2.9662 1.3885 9 6 2.7997 -2.9834 2.1714 10 6 2.4775 -3.2937 3.6350 11 6 1.7788 -4.6533 3.7216 12 6 0.5140 -4.6242 2.8591 13 1 -0.1739 -3.8730 3.2470 14 7 -0.1300 -5.9397 2.8906 15 6 -0.9764 -6.2519 3.8920 16 8 -1.2052 -5.4435 4.7667 17 6 -1.6392 -7.6048 3.9242 18 16 -2.7092 -7.7180 5.3797 19 6 -3.3364 -9.3515 5.1722 20 1 -3.0256 -9.9457 4.3256 21 6 -4.2292 -9.8748 6.0972 22 7 -4.6114 -9.1489 7.1265 23 14 -4.8946 -11.6063 5.8767 24 1 -4.0003 -12.5716 6.5650 25 1 -6.2574 -11.6909 6.4606 26 1 -4.9552 -11.9328 4.4294 27 6 0.8931 -4.2754 1.4179 28 1 -0.3634 0.0031 1.0275 29 1 -0.3634 0.8883 -0.5167 30 1 -0.3633 -0.8916 -0.5112 31 1 4.4322 -1.2373 -0.0065 32 1 2.5920 -3.1592 -0.4299 33 1 0.8976 -2.6345 -0.5783 34 1 3.2845 -2.0095 2.1048 35 1 3.4674 -3.7490 1.7763 36 1 1.8209 -2.5209 4.0347 37 1 3.4009 -3.3215 4.2135 38 1 1.5086 -4.8587 4.7574 39 1 2.4498 -5.4315 3.3580 40 1 0.0527 -6.5862 2.1909 41 1 -0.8765 -8.3820 3.9723 42 1 -2.2373 -7.7380 3.0228 43 1 -4.2661 -8.2497 7.2408 44 1 1.5697 -5.0350 1.0265 45 1 -0.0069 -4.2398 0.8042 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267620658.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:11 Heat of formation + Delta-G solvation = 60.313544 kcal Electronic energy + Delta-G solvation = -26568.715282 eV Core-core repulsion = 22749.466510 eV Total energy + Delta-G solvation = -3819.248772 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 6.47 seconds Orbital eigenvalues (eV) -43.63917 -40.12241 -38.66182 -35.44076 -34.87322 -33.39985 -32.56648 -31.61442 -30.58098 -28.50079 -28.28748 -27.02997 -24.89224 -23.62870 -23.27555 -22.86835 -21.07359 -20.44718 -20.15886 -18.38122 -17.65371 -17.27377 -16.74799 -16.49991 -15.81104 -15.58306 -15.21975 -15.11100 -14.72119 -14.59352 -14.12482 -13.93529 -13.87184 -13.66749 -13.55921 -13.36995 -13.34606 -13.04363 -12.49816 -12.42206 -12.19067 -11.99910 -11.88708 -11.69184 -11.28064 -11.14965 -11.08193 -10.94209 -10.83596 -10.43375 -10.22347 -9.63991 -9.63037 -9.54450 -9.08909 -9.02579 -8.91305 -8.26526 -6.71398 -6.65878 -4.04154 1.14832 1.99710 2.18374 2.77653 2.92272 3.24975 3.34013 3.36465 3.52499 3.68562 3.85067 4.09267 4.21105 4.30364 4.39090 4.49702 4.55128 4.59599 4.68894 4.77144 4.88746 4.92293 4.93571 4.98358 5.04000 5.12301 5.18730 5.26345 5.30158 5.41570 5.44840 5.49991 5.60730 5.71316 5.75834 5.80146 5.95584 6.02658 6.07847 6.15308 6.34722 6.43541 6.59557 7.54279 7.88362 8.15126 8.45003 8.46391 9.23144 10.78048 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.029424 B = 0.001872 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.379379 B =14953.315327 C =15179.980496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.277 5.277 3 N -0.087 5.087 4 N -0.272 5.272 5 C -0.047 4.047 6 C -0.007 4.007 7 C 0.127 3.873 8 N -0.533 5.533 9 C 0.051 3.949 10 C -0.113 4.113 11 C -0.133 4.133 12 C 0.152 3.848 13 H 0.096 0.904 14 N -0.735 5.735 15 C 0.533 3.467 16 O -0.514 6.514 17 C -0.131 4.131 18 S -0.116 6.116 19 C -0.608 4.608 20 H 0.066 0.934 21 C 0.035 3.965 22 N -0.884 5.884 23 Si 1.087 2.913 24 H -0.284 1.284 25 H -0.279 1.279 26 H -0.287 1.287 27 C 0.053 3.947 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.186 0.814 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.039 0.961 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.397 0.603 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.278 0.722 44 H 0.043 0.957 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.191 12.636 -18.544 27.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.070 5.070 3 N -0.066 5.066 4 N -0.136 5.136 5 C -0.206 4.206 6 C -0.141 4.141 7 C -0.002 4.002 8 N -0.258 5.258 9 C -0.076 4.076 10 C -0.151 4.151 11 C -0.172 4.172 12 C 0.047 3.953 13 H 0.114 0.886 14 N -0.389 5.389 15 C 0.319 3.681 16 O -0.388 6.388 17 C -0.282 4.282 18 S 0.111 5.889 19 C -0.756 4.756 20 H 0.084 0.916 21 C -0.176 4.176 22 N -0.518 5.518 23 Si 0.913 3.087 24 H -0.210 1.210 25 H -0.205 1.205 26 H -0.213 1.213 27 C -0.076 4.076 28 H 0.116 0.884 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.203 0.797 32 H 0.086 0.914 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.058 0.942 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.231 0.769 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.091 0.909 44 H 0.061 0.939 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 13.472 14.794 -16.185 25.736 hybrid contribution 1.787 -2.081 -2.501 3.713 sum 15.259 12.713 -18.686 27.270 Atomic orbital electron populations 1.22290 0.72469 1.05522 1.05660 1.47188 1.09510 1.04360 1.45980 1.78343 0.96598 1.11725 1.19978 1.75103 1.09675 1.12353 1.16510 1.23370 0.96997 0.92135 1.08060 1.21941 0.91122 0.91452 1.09557 1.20437 1.01689 0.87588 0.90518 1.61786 1.25374 1.27969 1.10680 1.22233 0.89865 1.01452 0.94046 1.21525 1.00963 0.97546 0.95105 1.22011 0.96409 0.97164 1.01613 1.20787 0.94666 0.85818 0.94058 0.88563 1.45974 1.47709 1.16687 1.28500 1.20268 0.77924 0.88962 0.80914 1.90710 1.61173 1.50302 1.36614 1.23317 1.02880 0.96070 1.05963 1.84838 1.54040 1.22000 1.28052 1.23726 1.35480 0.99757 1.16648 0.91583 1.26062 0.93675 1.05766 0.92062 1.70769 1.41519 1.11573 1.27927 0.83288 0.76819 0.72966 0.75621 1.21049 1.20483 1.21304 1.22280 0.99021 0.89128 0.97142 0.88441 0.88159 0.88377 0.79666 0.91356 0.89121 0.90257 0.94248 0.90865 0.90935 0.90669 0.92026 0.76941 0.88992 0.88979 0.90948 0.93853 0.89858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.36 11.21 59.85 0.67 1.03 16 2 N -0.28 -2.27 3.74 -63.79 -0.24 -2.51 16 3 N -0.09 -0.98 13.17 60.35 0.79 -0.19 16 4 N -0.27 -3.17 12.41 30.23 0.38 -2.79 16 5 C -0.05 -0.39 10.86 -17.74 -0.19 -0.59 16 6 C -0.01 -0.05 5.73 -82.09 -0.47 -0.52 16 7 C 0.13 0.64 5.19 -4.98 -0.03 0.61 16 8 N -0.53 -3.56 4.65 -236.11 -1.10 -4.65 16 9 C 0.05 0.36 5.30 -3.83 -0.02 0.34 16 10 C -0.11 -0.96 6.09 -26.65 -0.16 -1.13 16 11 C -0.13 -1.35 5.58 -26.61 -0.15 -1.50 16 12 C 0.15 1.57 2.62 -67.85 -0.18 1.39 16 13 H 0.10 1.27 7.58 -51.93 -0.39 0.87 16 14 N -0.73 -8.60 5.08 -53.73 -0.27 -8.88 16 15 C 0.53 9.23 7.81 -10.99 -0.09 9.15 16 16 O -0.51 -11.03 15.53 5.56 0.09 -10.94 16 17 C -0.13 -2.52 6.16 36.00 0.22 -2.30 16 18 S -0.12 -3.04 19.60 -107.50 -2.11 -5.15 16 19 C -0.61 -17.23 9.50 30.94 0.29 -16.93 16 20 H 0.07 1.79 7.80 -52.49 -0.41 1.38 16 21 C 0.03 1.00 5.49 -17.43 -0.10 0.91 16 22 N -0.88 -27.21 13.67 55.49 0.76 -26.45 16 23 Si 1.09 24.61 29.92 -169.99 -5.09 19.52 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 27 C 0.05 0.36 4.93 -3.83 -0.02 0.34 16 28 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.10 0.23 7.22 -51.93 -0.37 -0.14 16 31 H 0.19 1.02 8.06 -52.49 -0.42 0.60 16 32 H 0.07 0.26 8.12 -51.93 -0.42 -0.16 16 33 H 0.09 0.33 7.15 -51.93 -0.37 -0.04 16 34 H 0.08 0.59 6.25 -51.93 -0.32 0.27 16 35 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.40 3.44 8.60 -40.82 -0.35 3.09 16 41 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 42 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 43 H 0.28 8.74 7.13 -40.82 -0.29 8.45 16 44 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.08 0.51 8.01 -51.93 -0.42 0.09 16 LS Contribution 382.88 15.07 5.77 5.77 Total: -1.00 -37.21 382.88 -8.03 -45.24 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -6.80 Total: 0.22 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -0.21 Total: -9.19 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.32 Total: -45.48 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.09 Total: -10.94 kcal Atomic # 14 Polarization: 24.61 SS G_CDS: -5.09 Total: 19.52 kcal Atomic # 16 Polarization: -3.04 SS G_CDS: -2.11 Total: -5.15 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.21 -8.03 -45.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267620658.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.554 kcal (2) G-P(sol) polarization free energy of solvation -37.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.47 seconds